Wall clock time and date at job start Tue Mar 31 2020 22:28:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17405 * 1 3 3 C 1.43192 * 179.97438 * 2 1 4 4 C 1.39726 * 119.59139 * 235.27858 * 3 2 1 5 5 C 1.37971 * 119.20343 * 179.72636 * 4 3 2 6 6 C 1.40243 * 118.39812 * 0.51432 * 5 4 3 7 7 C 1.47676 * 120.43972 * 179.75698 * 6 5 4 8 8 O 1.21574 * 119.99973 * 359.72202 * 7 6 5 9 9 N 1.34772 * 119.99843 * 179.73043 * 7 6 5 10 10 C 1.46503 * 120.00299 * 179.97438 * 9 7 6 11 11 C 1.52995 * 109.47486 * 179.97438 * 10 9 7 12 12 H 1.08991 * 109.40046 * 59.85005 * 11 10 9 13 13 C 1.53147 * 109.43510 * 179.74775 * 11 10 9 14 14 C 1.53699 * 108.87564 * 66.16998 * 13 11 10 15 15 H 1.09007 * 112.09590 * 187.61745 * 14 13 11 16 16 C 1.54609 * 107.83411 * 312.23295 * 14 13 11 17 17 C 1.54308 * 104.74882 * 88.67439 * 16 14 13 18 18 C 1.54606 * 104.75295 * 359.97438 * 17 16 14 19 19 H 1.09003 * 112.19306 * 146.80477 * 18 17 16 20 20 C 1.53696 * 108.37207 * 271.11106 * 18 17 16 21 21 N 1.48291 * 107.27662 * 64.01696 * 14 13 11 22 22 C 1.36939 * 128.21555 * 107.43371 * 21 14 13 23 23 H 1.07997 * 120.00124 * 145.08558 * 22 21 14 24 24 C 1.38811 * 119.99477 * 325.07805 * 22 21 14 25 25 N 1.31617 * 120.00269 * 5.00070 * 24 22 21 26 26 Si 1.86805 * 119.99878 * 184.99774 * 24 22 21 27 27 H 1.48493 * 109.47083 * 89.99772 * 26 24 22 28 28 H 1.48501 * 109.47094 * 210.00114 * 26 24 22 29 29 H 1.48508 * 109.46960 * 330.00172 * 26 24 22 30 30 C 1.39651 * 119.11827 * 359.49035 * 6 5 4 31 31 N 1.31487 * 120.71094 * 0.24227 * 30 6 5 32 32 H 4.51260 * 14.17572 * 359.97438 * 4 2 1 33 33 H 1.08001 * 120.39962 * 0.02562 * 4 3 2 34 34 H 1.07996 * 120.80226 * 180.27720 * 5 4 3 35 35 H 0.97003 * 120.00374 * 359.97438 * 9 7 6 36 36 H 1.09006 * 109.46955 * 59.99524 * 10 9 7 37 37 H 1.09002 * 109.46868 * 299.99685 * 10 9 7 38 38 H 1.09004 * 109.56759 * 306.35383 * 13 11 10 39 39 H 1.08998 * 109.56828 * 185.99041 * 13 11 10 40 40 H 1.09002 * 110.37959 * 207.48747 * 16 14 13 41 41 H 1.08991 * 110.38086 * 329.85331 * 16 14 13 42 42 H 1.09007 * 110.38030 * 241.17372 * 17 16 14 43 43 H 1.09005 * 110.38493 * 118.81396 * 17 16 14 44 44 H 1.09004 * 109.57183 * 167.83950 * 20 18 17 45 45 H 1.08992 * 109.57452 * 288.08458 * 20 18 17 46 46 H 0.97004 * 119.99765 * 179.97438 * 25 24 22 47 47 H 1.08005 * 119.64637 * 180.27183 * 30 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.2956 0.6930 0.9987 5 6 4.6753 0.6836 0.9943 6 6 5.3343 -0.0169 -0.0265 7 6 6.8097 -0.0522 -0.0777 8 8 7.4614 0.5326 0.7657 9 7 7.4338 -0.7326 -1.0595 10 6 8.8975 -0.7672 -1.1107 11 6 9.3463 -1.6010 -2.3124 12 1 8.9584 -1.1546 -3.2279 13 6 10.8764 -1.6314 -2.3687 14 6 11.4039 -2.3977 -1.1452 15 1 12.4891 -2.3382 -1.0606 16 6 10.6772 -1.8512 0.1052 17 6 9.4020 -2.7117 0.2259 18 6 9.4777 -3.6967 -0.9633 19 1 9.0388 -4.6654 -0.7241 20 6 8.8040 -3.0410 -2.1792 21 7 10.9269 -3.7969 -1.2627 22 6 11.6524 -4.9159 -1.5736 23 1 11.4064 -5.8631 -1.1168 24 6 12.7037 -4.8328 -2.4761 25 7 13.0666 -3.6629 -2.9578 26 14 13.6037 -6.3813 -3.0069 27 1 12.9433 -6.9500 -4.2092 28 1 15.0148 -6.0482 -3.3281 29 1 13.5683 -7.3766 -1.9053 30 6 4.5767 -0.6852 -0.9906 31 7 3.2627 -0.6577 -0.9498 32 1 -1.0500 0.0001 -0.0008 33 1 2.7552 1.2251 1.7676 34 1 5.2344 1.2062 1.7562 35 1 6.9139 -1.1995 -1.7323 36 1 9.2827 -1.2146 -0.1943 37 1 9.2817 0.2481 -1.2087 38 1 11.2626 -0.6121 -2.3554 39 1 11.1983 -2.1338 -3.2808 40 1 11.3018 -1.9720 0.9904 41 1 10.4157 -0.8026 -0.0357 42 1 8.5129 -2.0863 0.1445 43 1 9.3991 -3.2558 1.1704 44 1 9.0317 -3.6158 -3.0769 45 1 7.7250 -3.0127 -2.0276 46 1 13.8016 -3.6048 -3.5882 47 1 5.0753 -1.2310 -1.7780 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001048583501.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:28:47 Heat of formation + Delta-G solvation = 177.722378 kcal Electronic energy + Delta-G solvation = -29531.096609 eV Core-core repulsion = 25685.035459 eV Total energy + Delta-G solvation = -3846.061151 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.37823 -40.58297 -38.71311 -34.85917 -34.31068 -32.92465 -32.82767 -31.56137 -31.05154 -30.56090 -29.63118 -26.89366 -25.16350 -23.98574 -23.45173 -23.20171 -21.06658 -20.70605 -19.74792 -19.38405 -18.89468 -17.97251 -17.23128 -16.81312 -16.34639 -15.88734 -15.34004 -15.11630 -14.94673 -14.54857 -14.23125 -14.01184 -13.59796 -13.44213 -12.99311 -12.94283 -12.70929 -12.63381 -12.02045 -11.71108 -11.64791 -11.51096 -11.39611 -11.28619 -11.22886 -10.88852 -10.77835 -10.53432 -10.34449 -10.31215 -10.13428 -9.88733 -9.77943 -9.66836 -9.44678 -9.37383 -9.24055 -9.18789 -8.51437 -8.18928 -6.55567 -5.87593 -3.31184 0.00046 0.83348 2.20538 2.21699 3.04946 3.17242 3.34877 3.42103 3.42442 3.47721 3.68388 4.19033 4.42553 4.43415 4.55382 4.71074 4.74459 5.12904 5.21496 5.26666 5.30155 5.42753 5.49701 5.60659 5.66662 5.71140 5.75848 5.82087 5.90053 6.06338 6.10070 6.12390 6.17316 6.30090 6.40144 6.41758 6.55799 6.64095 6.66805 6.74069 6.88453 6.97406 7.00017 7.09165 7.14650 7.39243 7.51797 7.53239 7.67357 7.78948 8.19247 8.30202 9.10440 9.69517 10.60981 11.26837 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.024507 B = 0.002461 C = 0.002355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1142.271421 B =11373.158278 C =11887.741077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.151 4.151 3 C 0.242 3.758 4 C -0.152 4.152 5 C -0.016 4.016 6 C -0.175 4.175 7 C 0.554 3.446 8 O -0.536 6.536 9 N -0.711 5.711 10 C 0.002 3.998 11 C -0.086 4.086 12 H 0.050 0.950 13 C -0.111 4.111 14 C 0.185 3.815 15 H 0.088 0.912 16 C -0.172 4.172 17 C -0.162 4.162 18 C 0.148 3.852 19 H 0.063 0.937 20 C -0.121 4.121 21 N -0.580 5.580 22 C -0.236 4.236 23 H 0.066 0.934 24 C 0.014 3.986 25 N -0.897 5.897 26 Si 0.902 3.098 27 H -0.287 1.287 28 H -0.291 1.291 29 H -0.280 1.280 30 C 0.140 3.860 31 N -0.471 5.471 32 H 0.231 0.769 33 H 0.146 0.854 34 H 0.155 0.845 35 H 0.393 0.607 36 H 0.197 0.803 37 H 0.053 0.947 38 H 0.037 0.963 39 H 0.091 0.909 40 H 0.054 0.946 41 H 0.088 0.912 42 H 0.093 0.907 43 H 0.051 0.949 44 H 0.066 0.934 45 H 0.038 0.962 46 H 0.254 0.746 47 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.428 9.182 5.223 22.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.152 4.152 3 C 0.107 3.893 4 C -0.172 4.172 5 C -0.042 4.042 6 C -0.180 4.180 7 C 0.339 3.661 8 O -0.414 6.414 9 N -0.362 5.362 10 C -0.116 4.116 11 C -0.105 4.105 12 H 0.069 0.931 13 C -0.150 4.150 14 C 0.078 3.922 15 H 0.106 0.894 16 C -0.211 4.211 17 C -0.200 4.200 18 C 0.041 3.959 19 H 0.081 0.919 20 C -0.161 4.161 21 N -0.302 5.302 22 C -0.365 4.365 23 H 0.083 0.917 24 C -0.186 4.186 25 N -0.540 5.540 26 Si 0.732 3.268 27 H -0.213 1.213 28 H -0.217 1.217 29 H -0.205 1.205 30 C -0.020 4.020 31 N -0.179 5.179 32 H 0.247 0.753 33 H 0.164 0.836 34 H 0.173 0.827 35 H 0.229 0.771 36 H 0.212 0.788 37 H 0.071 0.929 38 H 0.056 0.944 39 H 0.109 0.891 40 H 0.073 0.927 41 H 0.106 0.894 42 H 0.110 0.890 43 H 0.070 0.930 44 H 0.084 0.916 45 H 0.056 0.944 46 H 0.065 0.935 47 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -19.121 9.053 5.012 21.741 hybrid contribution 0.465 -0.474 -0.436 0.795 sum -18.656 8.579 4.575 21.038 Atomic orbital electron populations 1.24975 0.95645 0.97018 0.97575 1.19286 0.91042 1.02566 1.02275 1.16738 0.88192 0.93243 0.91123 1.22034 0.94447 1.00933 0.99799 1.21702 0.93484 0.93156 0.95847 1.21277 0.95303 1.02619 0.98797 1.17896 0.86283 0.79672 0.82206 1.90786 1.66737 1.44824 1.39099 1.46348 1.09423 1.51704 1.28743 1.25364 0.77150 1.00939 1.08194 1.21503 0.98679 0.94986 0.95353 0.93124 1.22089 0.90926 0.98665 1.03363 1.21267 0.97761 0.84493 0.88679 0.89356 1.23504 0.96962 0.99207 1.01392 1.23393 0.98230 0.98838 0.99557 1.21557 0.87811 0.95211 0.91339 0.91895 1.22377 0.96701 0.95731 1.01271 1.44958 1.00851 1.03261 1.81107 1.18803 1.11778 0.87393 1.18514 0.91651 1.25313 1.00161 0.96561 0.96552 1.69885 1.29094 1.22077 1.32902 0.86304 0.78646 0.83065 0.78820 1.21345 1.21730 1.20488 1.22985 0.88705 0.94095 0.96193 1.67745 1.09703 1.17440 1.23027 0.75252 0.83592 0.82734 0.77147 0.78775 0.92896 0.94384 0.89058 0.92707 0.89419 0.88987 0.93032 0.91551 0.94371 0.93548 0.81728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.90 19.25 29.55 0.57 -0.33 16 2 C -0.15 -1.45 13.43 -38.84 -0.52 -1.97 16 3 C 0.24 2.59 6.59 -84.91 -0.56 2.03 16 4 C -0.15 -1.35 9.77 -39.12 -0.38 -1.73 16 5 C -0.02 -0.16 9.70 -38.93 -0.38 -0.53 16 6 C -0.17 -1.97 5.89 -104.76 -0.62 -2.59 16 7 C 0.55 7.54 7.53 -12.41 -0.09 7.45 16 8 O -0.54 -8.98 16.41 5.30 0.09 -8.89 16 9 N -0.71 -9.16 4.35 -61.30 -0.27 -9.42 16 10 C 0.00 0.03 2.68 -4.04 -0.01 0.01 16 11 C -0.09 -1.44 2.77 -89.79 -0.25 -1.69 16 12 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 13 C -0.11 -2.24 5.18 -26.29 -0.14 -2.37 16 14 C 0.18 4.06 3.12 -65.74 -0.20 3.85 16 15 H 0.09 2.22 7.28 -51.93 -0.38 1.84 16 16 C -0.17 -3.18 5.72 -25.20 -0.14 -3.33 16 17 C -0.16 -2.84 5.72 -25.20 -0.14 -2.98 16 18 C 0.15 2.91 4.28 -65.72 -0.28 2.63 16 19 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 20 C -0.12 -2.10 5.39 -25.61 -0.14 -2.24 16 21 N -0.58 -13.75 2.75 -152.75 -0.42 -14.17 16 22 C -0.24 -6.25 10.29 -15.06 -0.15 -6.41 16 23 H 0.07 1.73 7.83 -52.49 -0.41 1.32 16 24 C 0.01 0.37 5.48 -17.43 -0.10 0.27 16 25 N -0.90 -24.44 10.28 55.49 0.57 -23.87 16 26 Si 0.90 21.09 29.56 -169.99 -5.02 16.07 16 27 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 28 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 29 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 30 C 0.14 1.48 10.70 -17.17 -0.18 1.29 16 31 N -0.47 -5.55 10.26 -10.79 -0.11 -5.66 16 32 H 0.23 0.53 7.80 -54.09 -0.42 0.11 16 33 H 0.15 0.89 8.06 -52.49 -0.42 0.46 16 34 H 0.16 1.40 7.73 -52.49 -0.41 0.99 16 35 H 0.39 4.20 5.39 -40.82 -0.22 3.98 16 36 H 0.20 3.21 1.12 -166.02 -0.19 3.02 16 37 H 0.05 0.85 8.00 -51.93 -0.42 0.43 16 38 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.09 2.17 7.01 -51.93 -0.36 1.80 16 40 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 41 H 0.09 1.51 4.84 -51.93 -0.25 1.25 16 42 H 0.09 1.48 3.95 -51.93 -0.21 1.27 16 43 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 44 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 45 H 0.04 0.54 6.77 -51.93 -0.35 0.19 16 46 H 0.25 6.80 8.31 -40.82 -0.34 6.46 16 47 H 0.17 1.36 6.40 -52.48 -0.34 1.02 16 LS Contribution 367.78 15.07 5.54 5.54 Total: -1.00 -30.94 367.78 -9.39 -40.33 By element: Atomic # 1 Polarization: 14.74 SS G_CDS: -6.04 Total: 8.70 kcal Atomic # 6 Polarization: -4.90 SS G_CDS: -3.73 Total: -8.63 kcal Atomic # 7 Polarization: -52.89 SS G_CDS: -0.23 Total: -53.12 kcal Atomic # 8 Polarization: -8.98 SS G_CDS: 0.09 Total: -8.89 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -30.94 -9.39 -40.33 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001048583501.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 218.055 kcal (2) G-P(sol) polarization free energy of solvation -30.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 187.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.332 kcal (6) G-S(sol) free energy of system = (1) + (5) 177.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds