Wall clock time and date at job start Tue Mar 31 2020 22:28:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17405 * 1 3 3 C 1.43192 * 179.97438 * 2 1 4 4 C 1.39726 * 119.59139 * 235.27858 * 3 2 1 5 5 C 1.37971 * 119.20343 * 179.72636 * 4 3 2 6 6 C 1.40243 * 118.39812 * 0.51432 * 5 4 3 7 7 C 1.47676 * 120.43972 * 179.75698 * 6 5 4 8 8 O 1.21574 * 119.99973 * 359.72202 * 7 6 5 9 9 N 1.34772 * 119.99843 * 179.73043 * 7 6 5 10 10 C 1.46503 * 120.00299 * 179.97438 * 9 7 6 11 11 C 1.52995 * 109.47486 * 179.97438 * 10 9 7 12 12 H 1.08991 * 109.40046 * 59.85005 * 11 10 9 13 13 C 1.53147 * 109.43510 * 179.74775 * 11 10 9 14 14 C 1.53699 * 108.87564 * 66.16998 * 13 11 10 15 15 H 1.09007 * 112.09590 * 187.61745 * 14 13 11 16 16 C 1.54609 * 107.83411 * 312.23295 * 14 13 11 17 17 C 1.54308 * 104.74882 * 88.67439 * 16 14 13 18 18 C 1.54606 * 104.75295 * 359.97438 * 17 16 14 19 19 H 1.09003 * 112.19306 * 146.80477 * 18 17 16 20 20 C 1.53696 * 108.37207 * 271.11106 * 18 17 16 21 21 N 1.48291 * 107.27662 * 64.01696 * 14 13 11 22 22 C 1.36939 * 128.21555 * 107.43371 * 21 14 13 23 23 H 1.07997 * 120.00124 * 145.08558 * 22 21 14 24 24 C 1.38811 * 119.99477 * 325.07805 * 22 21 14 25 25 N 1.31617 * 120.00269 * 5.00070 * 24 22 21 26 26 Si 1.86805 * 119.99878 * 184.99774 * 24 22 21 27 27 H 1.48493 * 109.47083 * 89.99772 * 26 24 22 28 28 H 1.48501 * 109.47094 * 210.00114 * 26 24 22 29 29 H 1.48508 * 109.46960 * 330.00172 * 26 24 22 30 30 C 1.39651 * 119.11827 * 359.49035 * 6 5 4 31 31 N 1.31487 * 120.71094 * 0.24227 * 30 6 5 32 32 H 4.51260 * 14.17572 * 359.97438 * 4 2 1 33 33 H 1.08001 * 120.39962 * 0.02562 * 4 3 2 34 34 H 1.07996 * 120.80226 * 180.27720 * 5 4 3 35 35 H 0.97003 * 120.00374 * 359.97438 * 9 7 6 36 36 H 1.09006 * 109.46955 * 59.99524 * 10 9 7 37 37 H 1.09002 * 109.46868 * 299.99685 * 10 9 7 38 38 H 1.09004 * 109.56759 * 306.35383 * 13 11 10 39 39 H 1.08998 * 109.56828 * 185.99041 * 13 11 10 40 40 H 1.09002 * 110.37959 * 207.48747 * 16 14 13 41 41 H 1.08991 * 110.38086 * 329.85331 * 16 14 13 42 42 H 1.09007 * 110.38030 * 241.17372 * 17 16 14 43 43 H 1.09005 * 110.38493 * 118.81396 * 17 16 14 44 44 H 1.09004 * 109.57183 * 167.83950 * 20 18 17 45 45 H 1.08992 * 109.57452 * 288.08458 * 20 18 17 46 46 H 0.97004 * 119.99765 * 179.97438 * 25 24 22 47 47 H 1.08005 * 119.64637 * 180.27183 * 30 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.2956 0.6930 0.9987 5 6 4.6753 0.6836 0.9943 6 6 5.3343 -0.0169 -0.0265 7 6 6.8097 -0.0522 -0.0777 8 8 7.4614 0.5326 0.7657 9 7 7.4338 -0.7326 -1.0595 10 6 8.8975 -0.7672 -1.1107 11 6 9.3463 -1.6010 -2.3124 12 1 8.9584 -1.1546 -3.2279 13 6 10.8764 -1.6314 -2.3687 14 6 11.4039 -2.3977 -1.1452 15 1 12.4891 -2.3382 -1.0606 16 6 10.6772 -1.8512 0.1052 17 6 9.4020 -2.7117 0.2259 18 6 9.4777 -3.6967 -0.9633 19 1 9.0388 -4.6654 -0.7241 20 6 8.8040 -3.0410 -2.1792 21 7 10.9269 -3.7969 -1.2627 22 6 11.6524 -4.9159 -1.5736 23 1 11.4064 -5.8631 -1.1168 24 6 12.7037 -4.8328 -2.4761 25 7 13.0666 -3.6629 -2.9578 26 14 13.6037 -6.3813 -3.0069 27 1 12.9433 -6.9500 -4.2092 28 1 15.0148 -6.0482 -3.3281 29 1 13.5683 -7.3766 -1.9053 30 6 4.5767 -0.6852 -0.9906 31 7 3.2627 -0.6577 -0.9498 32 1 -1.0500 0.0001 -0.0008 33 1 2.7552 1.2251 1.7676 34 1 5.2344 1.2062 1.7562 35 1 6.9139 -1.1995 -1.7323 36 1 9.2827 -1.2146 -0.1943 37 1 9.2817 0.2481 -1.2087 38 1 11.2626 -0.6121 -2.3554 39 1 11.1983 -2.1338 -3.2808 40 1 11.3018 -1.9720 0.9904 41 1 10.4157 -0.8026 -0.0357 42 1 8.5129 -2.0863 0.1445 43 1 9.3991 -3.2558 1.1704 44 1 9.0317 -3.6158 -3.0769 45 1 7.7250 -3.0127 -2.0276 46 1 13.8016 -3.6048 -3.5882 47 1 5.0753 -1.2310 -1.7780 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001048583501.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:28:47 Heat of formation + Delta-G solvation = 159.760962 kcal Electronic energy + Delta-G solvation = -29531.875475 eV Core-core repulsion = 25685.035459 eV Total energy + Delta-G solvation = -3846.840016 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.72875 -41.49062 -39.81383 -36.23853 -35.04217 -34.50803 -33.62350 -32.98193 -32.33444 -31.86691 -31.18404 -28.36559 -26.26148 -25.10821 -24.74769 -24.63006 -22.29839 -22.02557 -20.93571 -20.49292 -20.36362 -19.10750 -18.62431 -17.92350 -17.38153 -16.88919 -16.63602 -16.36491 -16.08068 -15.93886 -15.45167 -14.99202 -14.78272 -14.49328 -14.41590 -14.22274 -14.16439 -13.74670 -13.62704 -13.28742 -13.12764 -13.07421 -12.82816 -12.68654 -12.46930 -12.30679 -12.25212 -11.95540 -11.89003 -11.58864 -11.35945 -11.17729 -11.06586 -10.97598 -10.84124 -10.75998 -10.58711 -10.44112 -9.97479 -9.46804 -8.43786 -7.89062 -5.33048 -0.75777 0.11626 1.45014 1.46346 1.47797 1.55409 1.63204 2.12829 2.19955 2.49794 2.89549 2.93760 3.30254 3.51271 3.64336 3.65115 3.77697 3.94984 3.96847 3.99710 4.06629 4.10275 4.26766 4.31598 4.41941 4.52019 4.59695 4.62550 4.71322 4.75513 4.82413 4.93757 4.95061 5.03043 5.06099 5.07958 5.13240 5.21587 5.31723 5.42241 5.43277 5.49726 5.56004 5.59220 5.67864 5.77547 5.98989 6.38418 6.45567 6.51399 6.66842 7.13572 7.16312 7.74865 8.67381 9.24058 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.024507 B = 0.002461 C = 0.002355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1142.271421 B =11373.158278 C =11887.741077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C -0.217 4.217 3 C 0.234 3.766 4 C -0.147 4.147 5 C -0.016 4.016 6 C -0.189 4.189 7 C 0.560 3.440 8 O -0.570 6.570 9 N -0.704 5.704 10 C 0.014 3.986 11 C -0.075 4.075 12 H 0.069 0.931 13 C -0.105 4.105 14 C 0.180 3.820 15 H 0.045 0.955 16 C -0.163 4.163 17 C -0.149 4.149 18 C 0.140 3.860 19 H 0.061 0.939 20 C -0.114 4.114 21 N -0.603 5.603 22 C -0.249 4.249 23 H 0.060 0.940 24 C -0.036 4.036 25 N -0.917 5.917 26 Si 0.962 3.038 27 H -0.286 1.286 28 H -0.295 1.295 29 H -0.274 1.274 30 C 0.143 3.857 31 N -0.497 5.497 32 H 0.271 0.729 33 H 0.173 0.827 34 H 0.161 0.839 35 H 0.406 0.594 36 H 0.186 0.814 37 H 0.052 0.948 38 H 0.046 0.954 39 H 0.051 0.949 40 H 0.050 0.950 41 H 0.107 0.893 42 H 0.115 0.885 43 H 0.053 0.947 44 H 0.039 0.961 45 H 0.079 0.921 46 H 0.248 0.752 47 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.872 9.823 5.819 25.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.217 4.217 3 C 0.100 3.900 4 C -0.166 4.166 5 C -0.042 4.042 6 C -0.194 4.194 7 C 0.347 3.653 8 O -0.450 6.450 9 N -0.355 5.355 10 C -0.105 4.105 11 C -0.094 4.094 12 H 0.087 0.913 13 C -0.144 4.144 14 C 0.073 3.927 15 H 0.063 0.937 16 C -0.201 4.201 17 C -0.187 4.187 18 C 0.034 3.966 19 H 0.079 0.921 20 C -0.153 4.153 21 N -0.326 5.326 22 C -0.378 4.378 23 H 0.078 0.922 24 C -0.233 4.233 25 N -0.562 5.562 26 Si 0.791 3.209 27 H -0.213 1.213 28 H -0.222 1.222 29 H -0.199 1.199 30 C -0.017 4.017 31 N -0.206 5.206 32 H 0.287 0.713 33 H 0.190 0.810 34 H 0.179 0.821 35 H 0.244 0.756 36 H 0.201 0.799 37 H 0.070 0.930 38 H 0.065 0.935 39 H 0.070 0.930 40 H 0.069 0.931 41 H 0.125 0.875 42 H 0.132 0.868 43 H 0.072 0.928 44 H 0.058 0.942 45 H 0.097 0.903 46 H 0.058 0.942 47 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -22.607 9.684 5.607 25.225 hybrid contribution 1.385 -0.657 -0.578 1.638 sum -21.222 9.027 5.029 23.604 Atomic orbital electron populations 1.25990 0.96345 0.93774 0.94483 1.19648 0.91615 1.05379 1.05094 1.17126 0.89196 0.92697 0.90996 1.22266 0.93979 1.00457 0.99911 1.21876 0.94056 0.92707 0.95581 1.21088 0.93759 1.04423 1.00162 1.18139 0.87086 0.78690 0.81411 1.90773 1.67646 1.46243 1.40385 1.46130 1.08354 1.51870 1.29177 1.24926 0.78725 1.00326 1.06532 1.21347 0.95941 0.95124 0.97011 0.91305 1.21890 0.93727 0.98213 1.00615 1.21197 0.95804 0.84509 0.91156 0.93713 1.23455 0.97019 1.00346 0.99292 1.23326 0.98457 0.98285 0.98637 1.21778 0.85687 0.96086 0.93078 0.92100 1.22263 0.98946 0.95261 0.98835 1.45152 1.02844 1.03110 1.81468 1.19025 1.12227 0.88224 1.18344 0.92215 1.25946 1.01315 0.98967 0.97058 1.70052 1.29361 1.23404 1.33333 0.85362 0.77109 0.80150 0.78312 1.21253 1.22209 1.19877 1.23235 0.88501 0.93692 0.96254 1.67784 1.10143 1.18605 1.24058 0.71268 0.80952 0.82110 0.75586 0.79862 0.93010 0.93489 0.92990 0.93069 0.87526 0.86790 0.92782 0.94166 0.90261 0.94241 0.79888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.87 19.25 74.32 1.43 0.56 16 2 C -0.22 -3.69 13.43 30.01 0.40 -3.29 16 3 C 0.23 4.64 6.59 40.58 0.27 4.91 16 4 C -0.15 -2.31 9.77 22.57 0.22 -2.09 16 5 C -0.02 -0.29 9.70 22.69 0.22 -0.07 16 6 C -0.19 -3.91 5.89 -19.96 -0.12 -4.03 16 7 C 0.56 14.03 7.53 86.74 0.65 14.69 16 8 O -0.57 -18.12 16.41 -3.95 -0.06 -18.19 16 9 N -0.70 -16.18 4.35 -466.13 -2.03 -18.20 16 10 C 0.01 0.40 2.68 86.38 0.23 0.64 16 11 C -0.08 -2.41 2.77 -10.25 -0.03 -2.44 16 12 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 13 C -0.10 -4.29 5.18 30.88 0.16 -4.13 16 14 C 0.18 8.13 3.12 45.43 0.14 8.27 16 15 H 0.04 2.38 7.28 -2.38 -0.02 2.36 16 16 C -0.16 -5.96 5.72 31.59 0.18 -5.78 16 17 C -0.15 -5.01 5.72 31.58 0.18 -4.83 16 18 C 0.14 5.41 4.28 45.42 0.19 5.61 16 19 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 20 C -0.11 -3.77 5.39 31.32 0.17 -3.60 16 21 N -0.60 -29.26 2.75 -637.18 -1.75 -31.01 16 22 C -0.25 -13.55 10.29 84.03 0.86 -12.68 16 23 H 0.06 3.24 7.83 -2.91 -0.02 3.22 16 24 C -0.04 -1.96 5.48 84.86 0.47 -1.50 16 25 N -0.92 -52.16 10.28 21.65 0.22 -51.93 16 26 Si 0.96 44.57 29.56 68.60 2.03 46.60 16 27 H -0.29 -13.09 7.11 99.48 0.71 -12.39 16 28 H -0.30 -13.79 7.11 99.48 0.71 -13.08 16 29 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 30 C 0.14 2.73 10.70 85.09 0.91 3.64 16 31 N -0.50 -10.94 10.26 -188.04 -1.93 -12.87 16 32 H 0.27 -0.10 7.80 -4.42 -0.03 -0.13 16 33 H 0.17 1.65 8.06 -2.91 -0.02 1.63 16 34 H 0.16 2.65 7.73 -2.91 -0.02 2.63 16 35 H 0.41 7.29 5.39 -92.71 -0.50 6.79 16 36 H 0.19 5.69 1.12 -109.56 -0.12 5.57 16 37 H 0.05 1.54 8.00 -2.39 -0.02 1.52 16 38 H 0.05 1.79 8.14 -2.38 -0.02 1.77 16 39 H 0.05 2.55 7.01 -2.39 -0.02 2.54 16 40 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 41 H 0.11 3.53 4.84 -2.39 -0.01 3.51 16 42 H 0.11 3.36 3.95 -2.38 -0.01 3.35 16 43 H 0.05 1.79 8.14 -2.38 -0.02 1.77 16 44 H 0.04 1.56 8.14 -2.38 -0.02 1.54 16 45 H 0.08 1.98 6.77 -2.39 -0.02 1.97 16 46 H 0.25 13.85 8.31 -92.71 -0.77 13.08 16 47 H 0.18 2.52 6.40 -2.91 -0.02 2.50 16 Total: -1.00 -70.42 367.78 3.42 -67.00 By element: Atomic # 1 Polarization: 24.34 SS G_CDS: 0.40 Total: 24.74 kcal Atomic # 6 Polarization: -12.69 SS G_CDS: 6.55 Total: -6.14 kcal Atomic # 7 Polarization: -108.53 SS G_CDS: -5.49 Total: -114.02 kcal Atomic # 8 Polarization: -18.12 SS G_CDS: -0.06 Total: -18.19 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 2.03 Total: 46.60 kcal Total: -70.42 3.42 -67.00 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001048583501.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 226.763 kcal (2) G-P(sol) polarization free energy of solvation -70.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 156.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.002 kcal (6) G-S(sol) free energy of system = (1) + (5) 159.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds