Wall clock time and date at job start Tue Mar 31 2020 22:29:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.43196 * 179.97438 * 2 1 4 4 C 1.39984 * 120.46177 * 234.50605 * 3 2 1 5 5 C 1.38227 * 118.36581 * 179.72860 * 4 3 2 6 6 C 1.39481 * 119.20809 * 0.49515 * 5 4 3 7 7 C 1.47995 * 119.57152 * 179.77013 * 6 5 4 8 8 O 1.21544 * 119.99575 * 9.30589 * 7 6 5 9 9 N 1.34772 * 120.00440 * 189.30847 * 7 6 5 10 10 C 1.46944 * 120.71961 * 187.79774 * 9 7 6 11 11 C 1.53185 * 108.89431 * 234.30667 * 10 9 7 12 12 C 1.53178 * 109.28298 * 304.61054 * 11 10 9 13 13 C 1.52060 * 109.73317 * 59.92537 * 12 11 10 14 14 C 1.54374 * 110.58580 * 177.70446 * 13 12 11 15 15 C 1.54461 * 102.86700 * 207.24280 * 14 13 12 16 16 N 1.47079 * 107.30044 * 21.47674 * 15 14 13 17 17 C 1.36945 * 125.62797 * 180.71839 * 16 15 14 18 18 H 1.07998 * 120.00030 * 173.60802 * 17 16 15 19 19 C 1.38810 * 120.00040 * 353.61021 * 17 16 15 20 20 N 1.31627 * 119.99894 * 352.47538 * 19 17 16 21 21 Si 1.86795 * 120.00276 * 172.47897 * 19 17 16 22 22 H 1.48495 * 109.47447 * 94.98199 * 21 19 17 23 23 H 1.48503 * 109.47306 * 214.98865 * 21 19 17 24 24 H 1.48502 * 109.46745 * 334.98475 * 21 19 17 25 25 C 1.47579 * 108.74576 * 0.98011 * 16 15 14 26 26 C 1.47100 * 120.71409 * 7.77160 * 9 7 6 27 27 N 1.32827 * 120.86070 * 359.49423 * 6 5 4 28 28 C 1.31297 * 121.78802 * 0.25652 * 27 6 5 29 29 H 4.52937 * 13.94600 * 359.97438 * 4 2 1 30 30 H 1.08000 * 120.81749 * 359.97438 * 4 3 2 31 31 H 1.07998 * 120.39115 * 180.26779 * 5 4 3 32 32 H 1.09003 * 109.56508 * 114.48458 * 10 9 7 33 33 H 1.08999 * 109.66335 * 354.19389 * 10 9 7 34 34 H 1.09002 * 109.50129 * 184.66513 * 11 10 9 35 35 H 1.09005 * 109.49893 * 64.55548 * 11 10 9 36 36 H 1.08997 * 109.42581 * 299.84685 * 12 11 10 37 37 H 1.08996 * 109.38261 * 179.97438 * 12 11 10 38 38 H 1.09001 * 110.73075 * 88.89633 * 14 13 12 39 39 H 1.09003 * 110.73175 * 325.58955 * 14 13 12 40 40 H 1.09001 * 109.87949 * 262.04982 * 15 14 13 41 41 H 1.09004 * 110.00097 * 140.97361 * 15 14 13 42 42 H 0.96995 * 120.00024 * 180.02562 * 20 19 17 43 43 H 1.08998 * 110.37380 * 95.54445 * 25 16 15 44 44 H 1.08994 * 110.38123 * 217.88793 * 25 16 15 45 45 H 1.08995 * 109.56945 * 7.97302 * 26 9 7 46 46 H 1.08998 * 109.56838 * 247.62377 * 26 9 7 47 47 H 1.07994 * 119.64950 * 179.97438 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.3153 0.7015 0.9824 5 6 4.6967 0.6681 0.9446 6 6 5.3327 -0.0484 -0.0691 7 6 6.8113 -0.0854 -0.1202 8 8 7.4626 0.3593 0.8047 9 7 7.4356 -0.6120 -1.1923 10 6 8.8912 -0.8131 -1.1894 11 6 9.4906 -0.1165 -2.4150 12 6 8.8021 -0.6376 -3.6802 13 6 7.3111 -0.3471 -3.6100 14 6 6.6059 -0.8132 -4.9018 15 6 5.3837 0.1276 -4.9850 16 7 5.6911 1.3166 -4.1758 17 6 4.8573 2.3851 -3.9792 18 1 5.1330 3.1644 -3.2842 19 6 3.6580 2.4665 -4.6732 20 7 3.3887 1.5990 -5.6259 21 14 2.4261 3.8071 -4.2554 22 1 2.6236 4.9625 -5.1670 23 1 1.0471 3.2798 -4.4160 24 1 2.6282 4.2446 -2.8508 25 6 7.0487 1.1712 -3.6157 26 6 6.6745 -0.9984 -2.3903 27 7 4.6286 -0.7025 -0.9860 28 6 3.3156 -0.6996 -0.9818 29 1 -1.0500 0.0000 -0.0008 30 1 2.7961 1.2516 1.7533 31 1 5.2765 1.1936 1.6889 32 1 9.1124 -1.8796 -1.2312 33 1 9.3186 -0.3869 -0.2818 34 1 10.5585 -0.3286 -2.4681 35 1 9.3364 0.9595 -2.3336 36 1 8.9585 -1.7132 -3.7612 37 1 9.2271 -0.1426 -4.5533 38 1 6.2880 -1.8522 -4.8145 39 1 7.2561 -0.6788 -5.7663 40 1 4.5019 -0.3742 -4.5864 41 1 5.2076 0.4193 -6.0204 42 1 2.5508 1.6560 -6.1111 43 1 7.7765 1.6798 -4.2479 44 1 7.0849 1.5663 -2.6005 45 1 5.6430 -0.6600 -2.2923 46 1 6.6957 -2.0824 -2.5024 47 1 2.7778 -1.2431 -1.7444 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054229213.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:29:48 Heat of formation + Delta-G solvation = 102.493497 kcal Electronic energy + Delta-G solvation = -30939.251350 eV Core-core repulsion = 27089.928031 eV Total energy + Delta-G solvation = -3849.323320 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.86327 -39.49317 -38.17371 -35.60632 -34.44160 -33.02136 -32.34711 -31.93019 -30.52834 -29.88472 -28.32385 -26.02749 -25.61394 -24.31694 -23.78209 -23.46567 -21.77722 -20.28770 -19.70148 -19.15556 -18.31499 -17.26610 -16.78677 -16.62305 -15.68891 -15.52801 -15.26379 -14.88521 -14.75005 -14.41344 -14.03440 -13.91114 -13.66779 -13.53610 -13.28877 -12.86874 -12.76635 -12.58308 -12.27211 -12.06070 -11.80238 -11.64286 -11.55417 -11.11731 -10.99000 -10.87854 -10.79894 -10.75526 -10.58231 -10.13065 -10.08400 -9.96952 -9.85403 -9.75651 -9.65536 -9.51258 -8.77777 -8.67559 -8.55345 -8.29246 -6.74211 -5.66328 -3.00048 0.42822 1.27375 2.56171 2.65234 3.12951 3.32590 3.38891 3.45332 3.46577 4.02867 4.10025 4.30385 4.52603 4.70645 4.82201 4.99560 5.10496 5.11863 5.18492 5.21814 5.34397 5.45649 5.56347 5.64457 5.68421 5.74559 5.76733 5.77989 5.93099 5.97750 6.04256 6.09809 6.11490 6.18257 6.26423 6.40199 6.45173 6.47781 6.58692 6.62488 6.74908 6.83158 6.92737 7.19721 7.41982 7.54417 7.59900 7.72163 7.80527 7.87526 8.31866 8.32268 9.26723 9.87698 10.55466 11.43413 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.008170 B = 0.006505 C = 0.004243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3426.208500 B = 4303.579930 C = 6597.629281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.148 4.148 3 C -0.019 4.019 4 C -0.059 4.059 5 C -0.112 4.112 6 C 0.092 3.908 7 C 0.575 3.425 8 O -0.547 6.547 9 N -0.584 5.584 10 C 0.110 3.890 11 C -0.133 4.133 12 C -0.103 4.103 13 C -0.090 4.090 14 C -0.131 4.131 15 C 0.175 3.825 16 N -0.599 5.599 17 C -0.220 4.220 18 H 0.071 0.929 19 C -0.005 4.005 20 N -0.918 5.918 21 Si 0.900 3.100 22 H -0.290 1.290 23 H -0.290 1.290 24 H -0.283 1.283 25 C 0.152 3.848 26 C 0.095 3.905 27 N -0.431 5.431 28 C 0.135 3.865 29 H 0.226 0.774 30 H 0.143 0.857 31 H 0.150 0.850 32 H 0.065 0.935 33 H 0.088 0.912 34 H 0.070 0.930 35 H 0.069 0.931 36 H 0.059 0.941 37 H 0.064 0.936 38 H 0.060 0.940 39 H 0.059 0.941 40 H 0.029 0.971 41 H 0.057 0.943 42 H 0.250 0.750 43 H 0.014 0.986 44 H 0.032 0.968 45 H 0.160 0.840 46 H 0.056 0.944 47 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.834 -8.176 9.711 13.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.148 4.148 3 C -0.022 4.022 4 C -0.085 4.085 5 C -0.133 4.133 6 C -0.045 4.045 7 C 0.362 3.638 8 O -0.425 6.425 9 N -0.314 5.314 10 C -0.012 4.012 11 C -0.171 4.171 12 C -0.141 4.141 13 C -0.091 4.091 14 C -0.170 4.170 15 C 0.050 3.950 16 N -0.325 5.325 17 C -0.348 4.348 18 H 0.089 0.911 19 C -0.201 4.201 20 N -0.565 5.565 21 Si 0.731 3.269 22 H -0.217 1.217 23 H -0.216 1.216 24 H -0.208 1.208 25 C 0.026 3.974 26 C -0.026 4.026 27 N -0.141 5.141 28 C -0.025 4.025 29 H 0.243 0.757 30 H 0.161 0.839 31 H 0.168 0.832 32 H 0.084 0.916 33 H 0.106 0.894 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.078 0.922 37 H 0.082 0.918 38 H 0.078 0.922 39 H 0.078 0.922 40 H 0.047 0.953 41 H 0.075 0.925 42 H 0.060 0.940 43 H 0.032 0.968 44 H 0.050 0.950 45 H 0.176 0.824 46 H 0.074 0.926 47 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 3.481 -8.331 9.495 13.103 hybrid contribution -1.334 1.291 0.468 1.914 sum 2.147 -7.040 9.962 12.386 Atomic orbital electron populations 1.24878 0.95698 0.98595 0.98782 1.19692 0.91618 1.01799 1.01728 1.17117 0.87995 0.99632 0.97411 1.21590 0.93485 0.96160 0.97260 1.21912 0.94402 0.98189 0.98752 1.21194 0.94292 0.96505 0.92542 1.17813 0.85903 0.77658 0.82390 1.90736 1.66096 1.47654 1.37997 1.47979 1.07738 1.60351 1.15351 1.21617 0.79976 0.99967 0.99671 1.21928 0.99178 1.01267 0.94769 1.21363 0.94956 1.00440 0.97299 1.21457 0.94003 0.98018 0.95659 1.22791 0.99260 0.99583 0.95358 1.21194 0.91538 0.85311 0.96929 1.44474 1.11725 1.18957 1.57345 1.18967 0.98168 0.98789 1.18923 0.91103 1.24695 0.98554 0.98801 0.98092 1.69955 1.24424 1.37680 1.24491 0.86271 0.81301 0.81515 0.77828 1.21714 1.21648 1.20841 1.21393 0.88221 0.91652 0.96160 1.22846 1.00497 0.98130 0.81167 1.67669 1.07684 1.18453 1.20338 1.23082 0.89361 0.94638 0.95378 0.75726 0.83915 0.83196 0.91630 0.89365 0.91177 0.91233 0.92243 0.91759 0.92174 0.92211 0.95294 0.92457 0.93962 0.96807 0.95005 0.82375 0.92556 0.81561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.86 19.25 29.55 0.57 -1.29 16 2 C -0.15 -2.06 13.28 -38.84 -0.52 -2.57 16 3 C -0.02 -0.29 5.75 -106.69 -0.61 -0.90 16 4 C -0.06 -0.81 9.89 -38.93 -0.39 -1.19 16 5 C -0.11 -1.66 9.61 -39.12 -0.38 -2.04 16 6 C 0.09 1.56 6.58 -82.97 -0.55 1.02 16 7 C 0.58 10.23 7.65 -12.26 -0.09 10.14 16 8 O -0.55 -10.41 15.79 5.33 0.08 -10.33 16 9 N -0.58 -9.54 2.60 -174.26 -0.45 -10.00 16 10 C 0.11 1.50 6.42 -3.70 -0.02 1.47 16 11 C -0.13 -1.73 5.93 -26.54 -0.16 -1.88 16 12 C -0.10 -1.43 4.64 -27.12 -0.13 -1.55 16 13 C -0.09 -1.54 0.55 -154.10 -0.08 -1.63 16 14 C -0.13 -2.38 5.89 -25.25 -0.15 -2.53 16 15 C 0.17 4.12 5.17 -2.96 -0.02 4.10 16 16 N -0.60 -15.00 3.34 -170.33 -0.57 -15.57 16 17 C -0.22 -6.11 10.26 -15.06 -0.15 -6.27 16 18 H 0.07 1.98 7.84 -52.49 -0.41 1.57 16 19 C -0.01 -0.15 5.45 -17.43 -0.09 -0.24 16 20 N -0.92 -26.46 10.47 55.49 0.58 -25.88 16 21 Si 0.90 22.28 29.56 -169.99 -5.02 17.26 16 22 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 23 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 24 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 25 C 0.15 3.22 5.20 -2.89 -0.02 3.21 16 26 C 0.10 1.61 4.40 -4.11 -0.02 1.59 16 27 N -0.43 -7.37 6.11 -9.49 -0.06 -7.43 16 28 C 0.13 2.15 10.92 -17.15 -0.19 1.96 16 29 H 0.23 1.61 7.80 -54.09 -0.42 1.19 16 30 H 0.14 1.51 8.06 -52.49 -0.42 1.09 16 31 H 0.15 2.01 7.66 -52.49 -0.40 1.61 16 32 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.09 1.23 7.01 -51.93 -0.36 0.87 16 34 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.07 1.03 7.40 -51.93 -0.38 0.64 16 36 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 37 H 0.06 0.89 8.10 -51.93 -0.42 0.47 16 38 H 0.06 0.98 7.99 -51.93 -0.41 0.56 16 39 H 0.06 1.03 8.00 -51.93 -0.42 0.62 16 40 H 0.03 0.74 7.93 -51.93 -0.41 0.32 16 41 H 0.06 1.53 6.96 -51.93 -0.36 1.17 16 42 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 43 H 0.01 0.31 7.97 -51.93 -0.41 -0.11 16 44 H 0.03 0.71 7.65 -51.93 -0.40 0.32 16 45 H 0.16 3.04 3.86 -81.44 -0.31 2.73 16 46 H 0.06 0.88 8.12 -51.93 -0.42 0.46 16 47 H 0.17 2.41 8.06 -52.49 -0.42 1.99 16 LS Contribution 379.13 15.07 5.71 5.71 Total: -1.00 -32.25 379.13 -9.51 -41.77 By element: Atomic # 1 Polarization: 9.88 SS G_CDS: -6.80 Total: 3.08 kcal Atomic # 6 Polarization: 4.38 SS G_CDS: -2.99 Total: 1.39 kcal Atomic # 7 Polarization: -58.38 SS G_CDS: -0.50 Total: -58.88 kcal Atomic # 8 Polarization: -10.41 SS G_CDS: 0.08 Total: -10.33 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.26 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -32.25 -9.51 -41.77 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054229213.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.260 kcal (2) G-P(sol) polarization free energy of solvation -32.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.766 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds