Wall clock time and date at job start Tue Mar 31 2020 23:57:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09004 * 109.58228 * 2 1 4 4 C 1.53194 * 109.58591 * 120.28341 * 2 1 3 5 5 C 1.53037 * 109.31237 * 174.56673 * 4 2 1 6 6 C 1.53045 * 109.53822 * 298.63580 * 5 4 2 7 7 H 1.08996 * 109.49871 * 181.31229 * 6 5 4 8 8 N 1.46493 * 109.49659 * 301.41464 * 6 5 4 9 9 C 1.34775 * 120.00005 * 204.99877 * 8 6 5 10 10 O 1.21546 * 119.99824 * 0.02562 * 9 8 6 11 11 C 1.47945 * 120.00321 * 179.97438 * 9 8 6 12 12 N 1.32206 * 120.15509 * 6.00665 * 11 9 8 13 13 C 1.32033 * 122.68051 * 179.97438 * 12 11 9 14 14 C 1.36688 * 122.02665 * 0.02562 * 13 12 11 15 15 C 1.40527 * 118.85046 * 359.97438 * 14 13 12 16 16 C 1.40322 * 122.22120 * 179.97438 * 15 14 13 17 17 C 1.36204 * 119.45216 * 179.97438 * 16 15 14 18 18 C 1.39386 * 121.00109 * 359.97438 * 17 16 15 19 19 C 1.36252 * 121.08392 * 0.02562 * 18 17 16 20 20 C 1.40091 * 119.53614 * 359.74994 * 19 18 17 21 21 C 1.53192 * 109.30928 * 61.36527 * 6 5 4 22 22 N 1.46921 * 109.70276 * 239.64657 * 2 1 3 23 23 C 1.36931 * 120.63437 * 6.50854 * 22 2 1 24 24 H 1.08007 * 120.00024 * 329.96711 * 23 22 2 25 25 C 1.38810 * 120.00116 * 149.95746 * 23 22 2 26 26 N 1.31622 * 120.00308 * 344.90018 * 25 23 22 27 27 Si 1.86803 * 119.99974 * 164.88979 * 25 23 22 28 28 H 1.48498 * 109.47011 * 0.02562 * 27 25 23 29 29 H 1.48505 * 109.47017 * 120.00341 * 27 25 23 30 30 H 1.48501 * 109.47296 * 240.00687 * 27 25 23 31 31 H 1.09000 * 109.46660 * 299.99653 * 1 2 3 32 32 H 1.08992 * 109.47342 * 59.99812 * 1 2 3 33 33 H 1.09000 * 109.46606 * 180.02562 * 1 2 3 34 34 H 1.09000 * 109.49988 * 294.51755 * 4 2 1 35 35 H 1.08999 * 109.49727 * 54.61395 * 4 2 1 36 36 H 1.09001 * 109.45961 * 58.65329 * 5 4 2 37 37 H 1.08998 * 109.46118 * 178.61602 * 5 4 2 38 38 H 0.97006 * 120.00226 * 24.99359 * 8 6 5 39 39 H 1.08001 * 118.98564 * 180.02562 * 13 12 11 40 40 H 1.08004 * 120.57475 * 180.02562 * 14 13 12 41 41 H 1.07996 * 120.27479 * 0.02562 * 16 15 14 42 42 H 1.08003 * 119.49996 * 179.97438 * 17 16 15 43 43 H 1.08005 * 119.45449 * 180.02562 * 18 17 16 44 44 H 1.07998 * 120.23606 * 180.02562 * 19 18 17 45 45 H 1.09000 * 109.59301 * 65.15423 * 21 6 5 46 46 H 1.09004 * 109.58240 * 185.44017 * 21 6 5 47 47 H 0.96996 * 120.00016 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8954 1.0270 0.0000 4 6 2.0436 -0.7278 1.2463 5 6 3.5678 -0.8433 1.1730 6 6 3.9604 -1.6608 -0.0599 7 1 5.0449 -1.7624 -0.0988 8 7 3.3467 -2.9886 0.0182 9 6 3.9061 -4.0288 -0.6311 10 8 4.9201 -3.8652 -1.2810 11 6 3.2866 -5.3700 -0.5519 12 7 2.1227 -5.5292 0.0547 13 6 1.5251 -6.7023 0.1540 14 6 2.0728 -7.8412 -0.3668 15 6 3.3099 -7.7577 -1.0282 16 6 3.9362 -8.8814 -1.5885 17 6 5.1354 -8.7357 -2.2177 18 6 5.7488 -7.4878 -2.3136 19 6 5.1687 -6.3759 -1.7809 20 6 3.9329 -6.4861 -1.1303 21 6 3.4686 -0.9434 -1.3210 22 7 2.0254 -0.6990 -1.1936 23 6 1.1585 -1.1151 -2.1685 24 1 0.1458 -1.3876 -1.9102 25 6 1.5812 -1.1865 -3.4887 26 7 2.6931 -0.5861 -3.8572 27 14 0.5723 -2.1350 -4.7425 28 1 -0.6242 -2.7131 -4.0797 29 1 0.1417 -1.2173 -5.8277 30 1 1.3971 -3.2282 -5.3168 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 -0.3632 -1.0277 0.0005 34 1 1.7639 -0.1655 2.1372 35 1 1.6050 -1.7246 1.2921 36 1 4.0045 0.1529 1.1022 37 1 3.9381 -1.3391 2.0703 38 1 2.5376 -3.1193 0.5372 39 1 0.5742 -6.7639 0.6623 40 1 1.5633 -8.7888 -0.2724 41 1 3.4708 -9.8537 -1.5221 42 1 5.6183 -9.6002 -2.6488 43 1 6.6996 -7.4007 -2.8184 44 1 5.6559 -5.4157 -1.8635 45 1 3.9920 0.0066 -1.4288 46 1 3.6599 -1.5672 -2.1942 47 1 2.9886 -0.6363 -4.7797 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071775639.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:57:26 Heat of formation + Delta-G solvation = 47.727808 kcal Electronic energy + Delta-G solvation = -30322.878391 eV Core-core repulsion = 26471.180253 eV Total energy + Delta-G solvation = -3851.698138 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.01334 -39.22587 -37.53576 -37.30562 -34.15404 -32.91999 -32.70011 -31.16345 -30.79866 -29.87549 -29.40564 -26.29121 -25.15703 -24.61772 -23.49897 -22.78319 -22.13415 -20.89695 -20.35245 -18.73352 -18.17894 -17.36920 -17.05927 -16.29106 -15.84533 -15.33114 -15.24976 -14.87973 -14.46736 -14.33901 -14.01346 -13.72318 -13.68385 -13.60846 -13.29926 -13.08574 -12.81226 -12.73911 -12.44518 -12.11423 -11.86943 -11.80984 -11.43177 -11.17334 -11.11730 -10.93140 -10.81661 -10.68536 -10.33196 -10.27404 -10.13278 -9.91343 -9.79923 -9.50101 -9.41278 -9.12979 -9.10751 -8.40765 -8.40694 -8.03082 -6.54108 -5.70613 -3.14372 0.13172 0.89703 1.78270 2.84797 3.40604 3.41187 3.49157 3.49905 3.56554 4.20454 4.33351 4.54349 4.54828 4.77705 4.81611 4.89187 5.08792 5.22710 5.29386 5.35542 5.40398 5.44087 5.49767 5.55784 5.64494 5.72306 5.82846 6.01081 6.05353 6.10127 6.16699 6.18601 6.34120 6.37434 6.39858 6.47392 6.49689 6.54050 6.62953 6.66506 6.74383 6.85795 6.97085 7.10298 7.18642 7.40484 7.69579 7.79676 7.89779 8.15032 8.54189 8.72112 9.28632 9.92809 10.49098 11.37561 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011125 B = 0.004397 C = 0.003954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2516.329839 B = 6367.108009 C = 7078.880992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.166 3.834 3 H 0.025 0.975 4 C -0.132 4.132 5 C -0.118 4.118 6 C 0.114 3.886 7 H 0.079 0.921 8 N -0.671 5.671 9 C 0.569 3.431 10 O -0.537 6.537 11 C 0.139 3.861 12 N -0.455 5.455 13 C 0.077 3.923 14 C -0.143 4.143 15 C -0.029 4.029 16 C -0.125 4.125 17 C -0.094 4.094 18 C -0.131 4.131 19 C -0.083 4.083 20 C -0.075 4.075 21 C 0.163 3.837 22 N -0.582 5.582 23 C -0.245 4.245 24 H 0.067 0.933 25 C 0.006 3.994 26 N -0.900 5.900 27 Si 0.892 3.108 28 H -0.278 1.278 29 H -0.290 1.290 30 H -0.290 1.290 31 H 0.036 0.964 32 H 0.060 0.940 33 H 0.052 0.948 34 H 0.053 0.947 35 H 0.057 0.943 36 H 0.072 0.928 37 H 0.052 0.948 38 H 0.407 0.593 39 H 0.158 0.842 40 H 0.139 0.861 41 H 0.129 0.871 42 H 0.124 0.876 43 H 0.127 0.873 44 H 0.176 0.824 45 H 0.027 0.973 46 H 0.095 0.905 47 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.316 -13.205 9.954 16.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.060 3.940 3 H 0.042 0.958 4 C -0.172 4.172 5 C -0.156 4.156 6 C 0.008 3.992 7 H 0.097 0.903 8 N -0.320 5.320 9 C 0.354 3.646 10 O -0.415 6.415 11 C -0.013 4.013 12 N -0.167 5.167 13 C -0.069 4.069 14 C -0.163 4.163 15 C -0.035 4.035 16 C -0.143 4.143 17 C -0.113 4.113 18 C -0.149 4.149 19 C -0.102 4.102 20 C -0.078 4.078 21 C 0.036 3.964 22 N -0.305 5.305 23 C -0.374 4.374 24 H 0.085 0.915 25 C -0.192 4.192 26 N -0.544 5.544 27 Si 0.722 3.278 28 H -0.203 1.203 29 H -0.217 1.217 30 H -0.217 1.217 31 H 0.056 0.944 32 H 0.079 0.921 33 H 0.071 0.929 34 H 0.072 0.928 35 H 0.076 0.924 36 H 0.090 0.910 37 H 0.070 0.930 38 H 0.244 0.756 39 H 0.175 0.825 40 H 0.157 0.843 41 H 0.147 0.853 42 H 0.142 0.858 43 H 0.145 0.855 44 H 0.192 0.808 45 H 0.045 0.955 46 H 0.114 0.886 47 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 2.571 -12.348 9.742 15.937 hybrid contribution -0.664 -1.468 -0.984 1.888 sum 1.907 -13.816 8.758 16.469 Atomic orbital electron populations 1.21790 0.96124 1.01297 1.00097 1.20455 0.92904 0.93567 0.87114 0.95779 1.22084 0.95089 1.00918 0.99080 1.21687 0.97146 1.00102 0.96675 1.21913 0.97086 0.81539 0.98637 0.90348 1.45742 1.28987 1.07905 1.49369 1.17594 0.83893 0.83089 0.80070 1.90550 1.25260 1.83723 1.41983 1.21599 0.91154 0.94004 0.94539 1.67320 1.08171 1.26946 1.14252 1.22189 0.99607 0.87180 0.97896 1.22073 0.95244 1.00466 0.98524 1.18186 0.94720 0.93180 0.97382 1.20870 0.96220 0.97390 0.99802 1.21042 0.95121 0.97773 0.97384 1.21097 1.00754 0.92472 1.00559 1.22280 0.93288 1.01734 0.92880 1.18744 0.96627 0.92573 0.99848 1.21167 0.83899 0.97083 0.94233 1.44023 1.02610 1.64768 1.19104 1.19103 0.95150 1.37285 0.85907 0.91497 1.25038 0.97758 0.99488 0.96963 1.69989 1.23883 1.43909 1.16607 0.86379 0.79734 0.79775 0.81879 1.20348 1.21748 1.21731 0.94449 0.92099 0.92886 0.92829 0.92424 0.90982 0.92974 0.75600 0.82476 0.84303 0.85263 0.85780 0.85523 0.80753 0.95470 0.88650 0.93794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.51 7.96 37.16 0.30 -2.21 16 2 C 0.17 3.32 3.49 -67.60 -0.24 3.08 16 3 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 4 C -0.13 -2.17 5.21 -26.61 -0.14 -2.30 16 5 C -0.12 -1.88 5.59 -26.69 -0.15 -2.03 16 6 C 0.11 2.18 2.81 -67.81 -0.19 1.99 16 7 H 0.08 1.50 7.58 -51.93 -0.39 1.10 16 8 N -0.67 -12.73 4.90 -54.60 -0.27 -13.00 16 9 C 0.57 11.34 7.74 -12.28 -0.10 11.25 16 10 O -0.54 -11.58 13.11 5.33 0.07 -11.51 16 11 C 0.14 2.51 6.81 -82.55 -0.56 1.95 16 12 N -0.46 -7.54 9.52 -9.81 -0.09 -7.63 16 13 C 0.08 1.01 11.06 -18.03 -0.20 0.81 16 14 C -0.14 -1.69 9.88 -39.28 -0.39 -2.08 16 15 C -0.03 -0.41 5.75 -106.83 -0.61 -1.02 16 16 C -0.12 -1.40 9.82 -39.53 -0.39 -1.79 16 17 C -0.09 -1.02 9.95 -39.89 -0.40 -1.42 16 18 C -0.13 -1.65 9.95 -39.87 -0.40 -2.05 16 19 C -0.08 -1.32 9.23 -39.60 -0.37 -1.68 16 20 C -0.08 -1.24 5.76 -106.59 -0.61 -1.86 16 21 C 0.16 3.88 4.88 -3.71 -0.02 3.86 16 22 N -0.58 -13.99 2.90 -164.77 -0.48 -14.47 16 23 C -0.24 -6.57 8.58 -15.06 -0.13 -6.70 16 24 H 0.07 1.78 6.25 -52.48 -0.33 1.45 16 25 C 0.01 0.18 4.95 -17.43 -0.09 0.09 16 26 N -0.90 -26.61 11.22 55.49 0.62 -25.99 16 27 Si 0.89 22.59 29.58 -169.99 -5.03 17.56 16 28 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 29 H -0.29 -7.35 7.11 56.52 0.40 -6.94 16 30 H -0.29 -7.56 7.11 56.52 0.40 -7.16 16 31 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.06 1.23 7.66 -51.93 -0.40 0.83 16 33 H 0.05 1.00 7.42 -51.93 -0.39 0.61 16 34 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 35 H 0.06 0.96 6.40 -51.93 -0.33 0.63 16 36 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 37 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.41 7.39 6.14 -40.82 -0.25 7.14 16 39 H 0.16 1.54 8.06 -52.49 -0.42 1.12 16 40 H 0.14 1.12 8.06 -52.48 -0.42 0.70 16 41 H 0.13 1.05 8.06 -52.49 -0.42 0.62 16 42 H 0.12 0.96 8.06 -52.48 -0.42 0.54 16 43 H 0.13 1.30 8.06 -52.48 -0.42 0.88 16 44 H 0.18 3.06 4.96 -52.49 -0.26 2.80 16 45 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 46 H 0.10 2.68 6.16 -51.93 -0.32 2.36 16 47 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 371.99 15.07 5.61 5.61 Total: -1.00 -31.84 371.99 -10.70 -42.54 By element: Atomic # 1 Polarization: 15.45 SS G_CDS: -6.45 Total: 9.00 kcal Atomic # 6 Polarization: 2.57 SS G_CDS: -4.67 Total: -2.10 kcal Atomic # 7 Polarization: -60.87 SS G_CDS: -0.22 Total: -61.09 kcal Atomic # 8 Polarization: -11.58 SS G_CDS: 0.07 Total: -11.51 kcal Atomic # 14 Polarization: 22.59 SS G_CDS: -5.03 Total: 17.56 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -31.84 -10.70 -42.54 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071775639.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.267 kcal (2) G-P(sol) polarization free energy of solvation -31.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.539 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds