Wall clock time and date at job start Tue Mar 31 2020 23:57:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09004 * 109.58228 * 2 1 4 4 C 1.53194 * 109.58591 * 120.28341 * 2 1 3 5 5 C 1.53037 * 109.31237 * 174.56673 * 4 2 1 6 6 C 1.53045 * 109.53822 * 298.63580 * 5 4 2 7 7 H 1.08996 * 109.49871 * 181.31229 * 6 5 4 8 8 N 1.46493 * 109.49659 * 301.41464 * 6 5 4 9 9 C 1.34775 * 120.00005 * 204.99877 * 8 6 5 10 10 O 1.21546 * 119.99824 * 0.02562 * 9 8 6 11 11 C 1.47945 * 120.00321 * 179.97438 * 9 8 6 12 12 N 1.32206 * 120.15509 * 6.00665 * 11 9 8 13 13 C 1.32033 * 122.68051 * 179.97438 * 12 11 9 14 14 C 1.36688 * 122.02665 * 0.02562 * 13 12 11 15 15 C 1.40527 * 118.85046 * 359.97438 * 14 13 12 16 16 C 1.40322 * 122.22120 * 179.97438 * 15 14 13 17 17 C 1.36204 * 119.45216 * 179.97438 * 16 15 14 18 18 C 1.39386 * 121.00109 * 359.97438 * 17 16 15 19 19 C 1.36252 * 121.08392 * 0.02562 * 18 17 16 20 20 C 1.40091 * 119.53614 * 359.74994 * 19 18 17 21 21 C 1.53192 * 109.30928 * 61.36527 * 6 5 4 22 22 N 1.46921 * 109.70276 * 239.64657 * 2 1 3 23 23 C 1.36931 * 120.63437 * 6.50854 * 22 2 1 24 24 H 1.08007 * 120.00024 * 329.96711 * 23 22 2 25 25 C 1.38810 * 120.00116 * 149.95746 * 23 22 2 26 26 N 1.31622 * 120.00308 * 344.90018 * 25 23 22 27 27 Si 1.86803 * 119.99974 * 164.88979 * 25 23 22 28 28 H 1.48498 * 109.47011 * 0.02562 * 27 25 23 29 29 H 1.48505 * 109.47017 * 120.00341 * 27 25 23 30 30 H 1.48501 * 109.47296 * 240.00687 * 27 25 23 31 31 H 1.09000 * 109.46660 * 299.99653 * 1 2 3 32 32 H 1.08992 * 109.47342 * 59.99812 * 1 2 3 33 33 H 1.09000 * 109.46606 * 180.02562 * 1 2 3 34 34 H 1.09000 * 109.49988 * 294.51755 * 4 2 1 35 35 H 1.08999 * 109.49727 * 54.61395 * 4 2 1 36 36 H 1.09001 * 109.45961 * 58.65329 * 5 4 2 37 37 H 1.08998 * 109.46118 * 178.61602 * 5 4 2 38 38 H 0.97006 * 120.00226 * 24.99359 * 8 6 5 39 39 H 1.08001 * 118.98564 * 180.02562 * 13 12 11 40 40 H 1.08004 * 120.57475 * 180.02562 * 14 13 12 41 41 H 1.07996 * 120.27479 * 0.02562 * 16 15 14 42 42 H 1.08003 * 119.49996 * 179.97438 * 17 16 15 43 43 H 1.08005 * 119.45449 * 180.02562 * 18 17 16 44 44 H 1.07998 * 120.23606 * 180.02562 * 19 18 17 45 45 H 1.09000 * 109.59301 * 65.15423 * 21 6 5 46 46 H 1.09004 * 109.58240 * 185.44017 * 21 6 5 47 47 H 0.96996 * 120.00016 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8954 1.0270 0.0000 4 6 2.0436 -0.7278 1.2463 5 6 3.5678 -0.8433 1.1730 6 6 3.9604 -1.6608 -0.0599 7 1 5.0449 -1.7624 -0.0988 8 7 3.3467 -2.9886 0.0182 9 6 3.9061 -4.0288 -0.6311 10 8 4.9201 -3.8652 -1.2810 11 6 3.2866 -5.3700 -0.5519 12 7 2.1227 -5.5292 0.0547 13 6 1.5251 -6.7023 0.1540 14 6 2.0728 -7.8412 -0.3668 15 6 3.3099 -7.7577 -1.0282 16 6 3.9362 -8.8814 -1.5885 17 6 5.1354 -8.7357 -2.2177 18 6 5.7488 -7.4878 -2.3136 19 6 5.1687 -6.3759 -1.7809 20 6 3.9329 -6.4861 -1.1303 21 6 3.4686 -0.9434 -1.3210 22 7 2.0254 -0.6990 -1.1936 23 6 1.1585 -1.1151 -2.1685 24 1 0.1458 -1.3876 -1.9102 25 6 1.5812 -1.1865 -3.4887 26 7 2.6931 -0.5861 -3.8572 27 14 0.5723 -2.1350 -4.7425 28 1 -0.6242 -2.7131 -4.0797 29 1 0.1417 -1.2173 -5.8277 30 1 1.3971 -3.2282 -5.3168 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 -0.3632 -1.0277 0.0005 34 1 1.7639 -0.1655 2.1372 35 1 1.6050 -1.7246 1.2921 36 1 4.0045 0.1529 1.1022 37 1 3.9381 -1.3391 2.0703 38 1 2.5376 -3.1193 0.5372 39 1 0.5742 -6.7639 0.6623 40 1 1.5633 -8.7888 -0.2724 41 1 3.4708 -9.8537 -1.5221 42 1 5.6183 -9.6002 -2.6488 43 1 6.6996 -7.4007 -2.8184 44 1 5.6559 -5.4157 -1.8635 45 1 3.9920 0.0066 -1.4288 46 1 3.6599 -1.5672 -2.1942 47 1 2.9886 -0.6363 -4.7797 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071775639.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:57:25 Heat of formation + Delta-G solvation = 27.990507 kcal Electronic energy + Delta-G solvation = -30323.734265 eV Core-core repulsion = 26471.180253 eV Total energy + Delta-G solvation = -3852.554012 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.14163 -40.68687 -39.10523 -38.35255 -35.83743 -34.53109 -33.99877 -32.32915 -32.11871 -31.75118 -30.50909 -27.93028 -26.91369 -25.92077 -24.50366 -23.99568 -23.79169 -22.25560 -21.93411 -20.39626 -19.38514 -18.45914 -18.18132 -18.14781 -17.20599 -16.79417 -16.71909 -16.23431 -15.95428 -15.71284 -15.48891 -15.28424 -15.07872 -14.75918 -14.66831 -14.43673 -14.26780 -14.01535 -13.88458 -13.63652 -13.13661 -13.02247 -12.90094 -12.73710 -12.66870 -12.55647 -12.45607 -12.38369 -12.14103 -12.07066 -11.58378 -11.23054 -11.17910 -11.08284 -11.01283 -10.56632 -10.41360 -10.14134 -9.99533 -9.05724 -8.56611 -7.83717 -5.28466 -0.95295 -0.11149 0.71856 1.34176 1.37797 1.45383 1.68012 2.12501 2.28681 2.47117 3.07964 3.18150 3.31937 3.61271 3.63155 3.73283 3.82096 3.91777 4.00783 4.09658 4.18211 4.21296 4.27261 4.42958 4.47664 4.48585 4.63534 4.71848 4.75453 4.80544 4.84936 4.95525 5.03072 5.04479 5.09425 5.10449 5.15544 5.26168 5.32016 5.39248 5.48584 5.56339 5.60776 5.62981 5.70683 5.72796 5.75176 5.91737 6.43898 6.49630 6.83609 7.18036 7.25292 7.92257 8.42854 9.21522 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011125 B = 0.004397 C = 0.003954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2516.329839 B = 6367.108009 C = 7078.880992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.155 3.845 3 H 0.018 0.982 4 C -0.121 4.121 5 C -0.110 4.110 6 C 0.123 3.877 7 H 0.072 0.928 8 N -0.668 5.668 9 C 0.560 3.440 10 O -0.569 6.569 11 C 0.092 3.908 12 N -0.466 5.466 13 C 0.053 3.947 14 C -0.110 4.110 15 C -0.053 4.053 16 C -0.108 4.108 17 C -0.099 4.099 18 C -0.116 4.116 19 C -0.132 4.132 20 C -0.091 4.091 21 C 0.174 3.826 22 N -0.595 5.595 23 C -0.231 4.231 24 H 0.072 0.928 25 C -0.053 4.053 26 N -0.935 5.935 27 Si 0.944 3.056 28 H -0.263 1.263 29 H -0.289 1.289 30 H -0.306 1.306 31 H 0.077 0.923 32 H 0.035 0.965 33 H 0.047 0.953 34 H 0.092 0.908 35 H 0.057 0.943 36 H 0.079 0.921 37 H 0.083 0.917 38 H 0.411 0.589 39 H 0.193 0.807 40 H 0.189 0.811 41 H 0.174 0.826 42 H 0.165 0.835 43 H 0.145 0.855 44 H 0.143 0.857 45 H 0.003 0.997 46 H 0.045 0.955 47 H 0.242 0.758 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.405 -16.729 12.288 20.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.050 3.950 3 H 0.036 0.964 4 C -0.160 4.160 5 C -0.148 4.148 6 C 0.017 3.983 7 H 0.090 0.910 8 N -0.318 5.318 9 C 0.346 3.654 10 O -0.449 6.449 11 C -0.058 4.058 12 N -0.178 5.178 13 C -0.094 4.094 14 C -0.129 4.129 15 C -0.059 4.059 16 C -0.126 4.126 17 C -0.118 4.118 18 C -0.134 4.134 19 C -0.151 4.151 20 C -0.094 4.094 21 C 0.047 3.953 22 N -0.318 5.318 23 C -0.361 4.361 24 H 0.089 0.911 25 C -0.248 4.248 26 N -0.582 5.582 27 Si 0.774 3.226 28 H -0.187 1.187 29 H -0.216 1.216 30 H -0.235 1.235 31 H 0.095 0.905 32 H 0.054 0.946 33 H 0.066 0.934 34 H 0.110 0.890 35 H 0.075 0.925 36 H 0.097 0.903 37 H 0.102 0.898 38 H 0.249 0.751 39 H 0.209 0.791 40 H 0.207 0.793 41 H 0.192 0.808 42 H 0.183 0.817 43 H 0.162 0.838 44 H 0.160 0.840 45 H 0.021 0.979 46 H 0.064 0.936 47 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 0.633 -15.860 12.122 19.972 hybrid contribution -0.074 -0.507 -1.682 1.758 sum 0.559 -16.367 10.440 19.421 Atomic orbital electron populations 1.21714 0.94776 1.01146 1.00872 1.20764 0.94135 0.93280 0.86839 0.96413 1.21966 0.94814 1.00867 0.98306 1.21668 0.97267 1.00037 0.95790 1.21658 0.96651 0.81973 0.98061 0.91006 1.45675 1.29136 1.07499 1.49459 1.18149 0.83636 0.84376 0.79278 1.90539 1.26679 1.84611 1.43088 1.21245 0.92875 0.93286 0.98367 1.67213 1.07587 1.29173 1.13849 1.22843 1.00908 0.86658 0.98952 1.22634 0.93656 1.01934 0.94705 1.18616 0.95899 0.92763 0.98594 1.21410 0.95736 0.98104 0.97307 1.21474 0.95265 0.97865 0.97174 1.21429 1.01034 0.92508 0.98426 1.22065 0.94582 1.01822 0.96600 1.18947 0.96925 0.93676 0.99877 1.20831 0.84233 0.95411 0.94874 1.44233 1.02212 1.65467 1.19917 1.19380 0.95389 1.35071 0.86309 0.91092 1.25684 0.98991 1.01264 0.98866 1.70148 1.25722 1.46187 1.16137 0.85536 0.78742 0.78218 0.80141 1.18734 1.21603 1.23450 0.90458 0.94551 0.93402 0.88956 0.92462 0.90251 0.89807 0.75084 0.79065 0.79336 0.80846 0.81705 0.83752 0.83980 0.97927 0.93628 0.94835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.53 7.96 71.98 0.57 -3.96 16 2 C 0.16 6.09 3.49 44.98 0.16 6.24 16 3 H 0.02 0.74 8.14 -2.38 -0.02 0.72 16 4 C -0.12 -3.66 5.21 30.67 0.16 -3.50 16 5 C -0.11 -3.36 5.59 30.62 0.17 -3.19 16 6 C 0.12 4.92 2.81 45.07 0.13 5.04 16 7 H 0.07 2.95 7.58 -2.39 -0.02 2.93 16 8 N -0.67 -26.57 4.90 -444.95 -2.18 -28.75 16 9 C 0.56 24.10 7.74 86.82 0.67 24.77 16 10 O -0.57 -27.29 13.11 -3.86 -0.05 -27.35 16 11 C 0.09 3.50 6.81 42.43 0.29 3.79 16 12 N -0.47 -15.41 9.52 -184.94 -1.76 -17.17 16 13 C 0.05 1.26 11.06 84.30 0.93 2.19 16 14 C -0.11 -2.16 9.88 22.47 0.22 -1.94 16 15 C -0.05 -1.34 5.75 -21.29 -0.12 -1.47 16 16 C -0.11 -1.95 9.82 22.30 0.22 -1.73 16 17 C -0.10 -1.80 9.95 22.07 0.22 -1.58 16 18 C -0.12 -2.88 9.95 22.08 0.22 -2.66 16 19 C -0.13 -4.46 9.23 22.26 0.21 -4.25 16 20 C -0.09 -3.11 5.76 -21.14 -0.12 -3.23 16 21 C 0.17 8.84 4.88 86.36 0.42 9.26 16 22 N -0.59 -29.55 2.90 -675.21 -1.96 -31.51 16 23 C -0.23 -12.78 8.58 84.03 0.72 -12.06 16 24 H 0.07 3.83 6.25 -2.91 -0.02 3.81 16 25 C -0.05 -3.14 4.95 84.86 0.42 -2.72 16 26 N -0.93 -58.97 11.22 21.65 0.24 -58.72 16 27 Si 0.94 48.30 29.58 68.60 2.03 50.33 16 28 H -0.26 -12.63 7.11 99.48 0.71 -11.93 16 29 H -0.29 -14.57 7.11 99.48 0.71 -13.86 16 30 H -0.31 -16.33 7.11 99.48 0.71 -15.62 16 31 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 32 H 0.04 1.44 7.66 -2.39 -0.02 1.42 16 33 H 0.05 1.73 7.42 -2.39 -0.02 1.71 16 34 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 35 H 0.06 1.78 6.40 -2.39 -0.02 1.76 16 36 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 37 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 38 H 0.41 15.22 6.14 -92.70 -0.57 14.65 16 39 H 0.19 3.03 8.06 -2.91 -0.02 3.01 16 40 H 0.19 1.76 8.06 -2.91 -0.02 1.74 16 41 H 0.17 1.59 8.06 -2.91 -0.02 1.57 16 42 H 0.17 1.67 8.06 -2.91 -0.02 1.65 16 43 H 0.14 2.89 8.06 -2.91 -0.02 2.86 16 44 H 0.14 5.68 4.96 -3.00 -0.01 5.66 16 45 H 0.00 0.15 8.14 -2.39 -0.02 0.13 16 46 H 0.05 2.78 6.16 -2.39 -0.01 2.77 16 47 H 0.24 15.09 8.31 -92.71 -0.77 14.32 16 Total: -1.00 -78.41 371.99 2.23 -76.18 By element: Atomic # 1 Polarization: 27.55 SS G_CDS: 0.43 Total: 27.98 kcal Atomic # 6 Polarization: 3.52 SS G_CDS: 5.48 Total: 9.01 kcal Atomic # 7 Polarization: -130.50 SS G_CDS: -5.66 Total: -136.16 kcal Atomic # 8 Polarization: -27.29 SS G_CDS: -0.05 Total: -27.35 kcal Atomic # 14 Polarization: 48.30 SS G_CDS: 2.03 Total: 50.33 kcal Total: -78.41 2.23 -76.18 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071775639.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.171 kcal (2) G-P(sol) polarization free energy of solvation -78.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.180 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds