Wall clock time and date at job start Tue Mar 31 2020 23:57:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.69768 * 2 1 4 4 C 1.53190 * 109.58831 * 239.64636 * 2 1 3 5 5 C 1.53036 * 109.31394 * 185.57830 * 4 2 1 6 6 C 1.53041 * 109.53077 * 61.36716 * 5 4 2 7 7 H 1.09006 * 109.49554 * 58.57634 * 6 5 4 8 8 N 1.46493 * 109.50190 * 178.68080 * 6 5 4 9 9 C 1.34778 * 119.99889 * 205.00209 * 8 6 5 10 10 O 1.21533 * 120.00507 * 359.97438 * 9 8 6 11 11 C 1.47952 * 119.99578 * 179.97438 * 9 8 6 12 12 N 1.32200 * 120.16113 * 1.83178 * 11 9 8 13 13 C 1.32034 * 122.68110 * 179.69754 * 12 11 9 14 14 C 1.36680 * 122.02542 * 0.58394 * 13 12 11 15 15 C 1.40531 * 118.85217 * 359.72215 * 14 13 12 16 16 C 1.40316 * 122.22047 * 179.97438 * 15 14 13 17 17 C 1.36198 * 119.45513 * 180.02562 * 16 15 14 18 18 C 1.39382 * 121.00242 * 359.97438 * 17 16 15 19 19 C 1.36255 * 121.07896 * 359.97438 * 18 17 16 20 20 C 1.40093 * 119.54457 * 0.02562 * 19 18 17 21 21 C 1.53202 * 109.31098 * 298.61776 * 6 5 4 22 22 N 1.46925 * 109.58527 * 120.34899 * 2 1 3 23 23 C 1.36933 * 120.63260 * 353.38116 * 22 2 1 24 24 H 1.08000 * 119.99985 * 26.32973 * 23 22 2 25 25 C 1.38817 * 119.99771 * 206.33016 * 23 22 2 26 26 N 1.31623 * 119.99645 * 217.43303 * 25 23 22 27 27 Si 1.86797 * 120.00286 * 37.43013 * 25 23 22 28 28 H 1.48501 * 109.47164 * 84.37510 * 27 25 23 29 29 H 1.48495 * 109.47448 * 204.37753 * 27 25 23 30 30 H 1.48499 * 109.46970 * 324.37608 * 27 25 23 31 31 H 1.09006 * 109.47339 * 180.35954 * 1 2 3 32 32 H 1.09001 * 109.47368 * 300.35651 * 1 2 3 33 33 H 1.08999 * 109.47330 * 60.35815 * 1 2 3 34 34 H 1.08998 * 109.49763 * 65.62366 * 4 2 1 35 35 H 1.09004 * 109.52009 * 305.54420 * 4 2 1 36 36 H 1.08997 * 109.46109 * 181.38569 * 5 4 2 37 37 H 1.09008 * 109.45845 * 301.36020 * 5 4 2 38 38 H 0.97006 * 120.00198 * 24.99671 * 8 6 5 39 39 H 1.07995 * 118.98150 * 180.28027 * 13 12 11 40 40 H 1.08000 * 120.57246 * 179.69724 * 14 13 12 41 41 H 1.08007 * 120.27329 * 359.97438 * 16 15 14 42 42 H 1.08009 * 119.50111 * 179.97438 * 17 16 15 43 43 H 1.08001 * 119.45925 * 179.97438 * 18 17 16 44 44 H 1.08006 * 120.22832 * 179.97438 * 19 18 17 45 45 H 1.08991 * 109.59635 * 294.86577 * 21 6 5 46 46 H 1.09000 * 109.70159 * 174.50231 * 21 6 5 47 47 H 0.97003 * 119.99884 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0262 0.0000 4 6 2.0436 -0.7293 -1.2454 5 6 3.5675 -0.8479 -1.1701 6 6 3.9567 -1.6658 0.0635 7 1 3.4978 -2.6528 0.0052 8 7 5.4139 -1.8056 0.1177 9 6 5.9670 -2.8486 0.7679 10 8 5.2570 -3.6729 1.3096 11 6 7.4388 -2.9900 0.8222 12 7 8.2149 -2.0762 0.2652 13 6 9.5330 -2.1497 0.2891 14 6 10.1903 -3.1891 0.8855 15 6 9.4374 -4.2064 1.4963 16 6 10.0387 -5.3055 2.1282 17 6 9.2544 -6.2598 2.7020 18 6 7.8645 -6.1605 2.6713 19 6 7.2478 -5.1063 2.0672 20 6 8.0217 -4.1051 1.4661 21 6 3.4650 -0.9468 1.3238 22 7 2.0225 -0.6994 1.1946 23 6 1.1537 -1.1126 2.1690 24 1 0.1245 -1.3252 1.9201 25 6 1.5958 -1.2581 3.4768 26 7 1.1436 -2.2472 4.2181 27 14 2.8326 -0.0502 4.1845 28 1 2.1183 1.1471 4.6958 29 1 3.5749 -0.6962 5.2966 30 1 3.7878 0.3587 3.1236 31 1 -0.3634 -1.0277 0.0064 32 1 -0.3634 0.5194 0.8868 33 1 -0.3634 0.5082 -0.8932 34 1 1.7660 -0.1668 -2.1368 35 1 1.6030 -1.7253 -1.2919 36 1 3.9378 -1.3447 -2.0668 37 1 4.0061 0.1475 -1.0990 38 1 5.9807 -1.1476 -0.3143 39 1 10.1093 -1.3668 -0.1813 40 1 11.2696 -3.2280 0.8871 41 1 11.1147 -5.3945 2.1585 42 1 9.7165 -7.1063 3.1882 43 1 7.2665 -6.9318 3.1339 44 1 6.1696 -5.0434 2.0511 45 1 3.9902 0.0022 1.4317 46 1 3.6520 -1.5694 2.1987 47 1 1.4523 -2.3487 5.1321 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071775641.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:57:33 Heat of formation + Delta-G solvation = 55.836582 kcal Electronic energy + Delta-G solvation = -29589.505630 eV Core-core repulsion = 25738.159115 eV Total energy + Delta-G solvation = -3851.346516 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.21088 -39.37991 -37.80334 -37.48896 -34.61988 -33.10519 -32.79066 -31.32505 -30.95203 -30.61516 -29.62599 -26.39951 -25.24068 -24.53388 -23.66213 -22.94556 -22.53263 -20.93372 -20.42112 -19.36352 -18.21919 -17.54805 -17.20173 -16.51336 -16.06645 -15.72784 -15.33586 -15.03899 -14.68564 -14.52533 -14.36055 -13.88879 -13.88012 -13.64735 -13.47142 -13.33747 -13.03215 -12.89820 -12.33411 -12.24136 -12.07796 -11.94069 -11.79792 -11.59952 -11.40457 -11.21182 -10.71577 -10.59903 -10.32715 -10.28979 -10.24076 -10.03911 -9.96805 -9.70625 -9.40641 -9.27600 -9.25563 -8.80251 -8.27681 -8.17950 -6.92382 -5.96804 -3.13941 -0.06348 0.72892 1.62159 2.63610 3.18194 3.25390 3.47596 3.57833 3.62170 4.00788 4.05834 4.38409 4.58518 4.61691 4.67271 4.73767 4.94374 4.97422 5.07704 5.15480 5.23226 5.27022 5.30523 5.48779 5.54397 5.58105 5.67629 5.81384 5.87375 5.95943 6.00515 6.10453 6.17466 6.20464 6.29870 6.32702 6.38527 6.39013 6.45388 6.53616 6.61931 6.65870 6.77790 6.83576 6.98448 7.04560 7.14716 7.50702 7.82787 8.02502 8.39712 8.42580 9.02511 9.82357 10.21393 11.17293 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.013340 B = 0.003585 C = 0.003183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2098.449353 B = 7808.951208 C = 8794.608484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.166 3.834 3 H 0.028 0.972 4 C -0.126 4.126 5 C -0.117 4.117 6 C 0.119 3.881 7 H 0.094 0.906 8 N -0.698 5.698 9 C 0.565 3.435 10 O -0.515 6.515 11 C 0.132 3.868 12 N -0.461 5.461 13 C 0.073 3.927 14 C -0.137 4.137 15 C -0.030 4.030 16 C -0.125 4.125 17 C -0.091 4.091 18 C -0.125 4.125 19 C -0.087 4.087 20 C -0.073 4.073 21 C 0.141 3.859 22 N -0.591 5.591 23 C -0.275 4.275 24 H 0.089 0.911 25 C 0.045 3.955 26 N -0.876 5.876 27 Si 0.825 3.175 28 H -0.292 1.292 29 H -0.298 1.298 30 H -0.256 1.256 31 H 0.058 0.942 32 H 0.062 0.938 33 H 0.039 0.961 34 H 0.059 0.941 35 H 0.066 0.934 36 H 0.057 0.943 37 H 0.061 0.939 38 H 0.405 0.595 39 H 0.159 0.841 40 H 0.141 0.859 41 H 0.131 0.869 42 H 0.126 0.874 43 H 0.130 0.870 44 H 0.177 0.823 45 H 0.027 0.973 46 H 0.072 0.928 47 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.064 -2.968 -9.918 20.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.060 3.940 3 H 0.046 0.954 4 C -0.166 4.166 5 C -0.155 4.155 6 C 0.014 3.986 7 H 0.112 0.888 8 N -0.348 5.348 9 C 0.349 3.651 10 O -0.391 6.391 11 C -0.020 4.020 12 N -0.172 5.172 13 C -0.073 4.073 14 C -0.157 4.157 15 C -0.036 4.036 16 C -0.143 4.143 17 C -0.110 4.110 18 C -0.143 4.143 19 C -0.105 4.105 20 C -0.076 4.076 21 C 0.014 3.986 22 N -0.315 5.315 23 C -0.402 4.402 24 H 0.106 0.894 25 C -0.157 4.157 26 N -0.515 5.515 27 Si 0.652 3.348 28 H -0.220 1.220 29 H -0.224 1.224 30 H -0.181 1.181 31 H 0.077 0.923 32 H 0.081 0.919 33 H 0.058 0.942 34 H 0.077 0.923 35 H 0.084 0.916 36 H 0.076 0.924 37 H 0.079 0.921 38 H 0.240 0.760 39 H 0.176 0.824 40 H 0.158 0.842 41 H 0.149 0.851 42 H 0.144 0.856 43 H 0.148 0.852 44 H 0.194 0.806 45 H 0.045 0.955 46 H 0.091 0.909 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 17.178 -2.891 -9.814 19.994 hybrid contribution 1.723 0.383 0.912 1.986 sum 18.901 -2.508 -8.902 21.042 Atomic orbital electron populations 1.21810 0.95341 1.02017 1.00277 1.20532 0.93653 0.93336 0.86506 0.95413 1.22029 0.94041 1.01726 0.98770 1.21684 0.97530 0.99674 0.96587 1.21971 0.77441 1.01539 0.97618 0.88843 1.45989 1.08683 1.26129 1.54006 1.17742 0.85455 0.82293 0.79586 1.90653 1.61537 1.41787 1.45136 1.21544 0.94295 0.91006 0.95109 1.67274 1.06901 1.27034 1.16041 1.22160 0.89573 0.97724 0.97856 1.22101 1.01063 0.94481 0.98038 1.18199 0.92305 0.95578 0.97474 1.20886 0.99892 0.93954 0.99555 1.21091 0.94129 0.98409 0.97417 1.21160 0.94506 0.98915 0.99730 1.22332 1.03905 0.91349 0.92949 1.18729 0.93104 0.96112 0.99655 1.21719 0.84887 0.96711 0.95314 1.44352 1.01989 1.65096 1.20053 1.18744 0.94915 1.40136 0.86383 0.89385 1.25173 0.96683 0.97343 0.96467 1.70131 1.45512 1.26140 1.09726 0.87816 0.82705 0.84542 0.79703 1.21964 1.22442 1.18145 0.92266 0.91893 0.94153 0.92259 0.91566 0.92443 0.92072 0.75957 0.82384 0.84158 0.85129 0.85575 0.85226 0.80579 0.95511 0.90916 0.92867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.49 7.93 37.16 0.29 -2.19 16 2 C 0.17 3.19 3.50 -67.60 -0.24 2.95 16 3 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 4 C -0.13 -2.02 5.37 -26.61 -0.14 -2.16 16 5 C -0.12 -1.77 5.35 -26.69 -0.14 -1.92 16 6 C 0.12 2.22 2.60 -67.81 -0.18 2.05 16 7 H 0.09 1.97 7.58 -51.93 -0.39 1.57 16 8 N -0.70 -11.59 5.07 -54.60 -0.28 -11.86 16 9 C 0.57 10.16 7.76 -12.28 -0.10 10.07 16 10 O -0.52 -10.78 13.08 5.34 0.07 -10.71 16 11 C 0.13 2.08 6.82 -82.55 -0.56 1.52 16 12 N -0.46 -6.30 9.51 -9.81 -0.09 -6.39 16 13 C 0.07 0.77 11.06 -18.03 -0.20 0.57 16 14 C -0.14 -1.33 9.88 -39.28 -0.39 -1.72 16 15 C -0.03 -0.37 5.75 -106.83 -0.61 -0.98 16 16 C -0.12 -1.22 9.82 -39.53 -0.39 -1.61 16 17 C -0.09 -0.90 9.95 -39.89 -0.40 -1.29 16 18 C -0.13 -1.49 9.95 -39.87 -0.40 -1.88 16 19 C -0.09 -1.29 9.23 -39.60 -0.37 -1.66 16 20 C -0.07 -1.09 5.76 -106.59 -0.61 -1.70 16 21 C 0.14 3.19 3.91 -3.70 -0.01 3.17 16 22 N -0.59 -13.99 2.74 -164.77 -0.45 -14.44 16 23 C -0.27 -7.60 8.92 -15.06 -0.13 -7.73 16 24 H 0.09 2.53 6.29 -52.49 -0.33 2.20 16 25 C 0.05 1.32 4.79 -17.43 -0.08 1.23 16 26 N -0.88 -27.07 13.97 55.49 0.78 -26.29 16 27 Si 0.83 21.92 26.69 -169.99 -4.54 17.38 16 28 H -0.29 -7.83 7.11 56.52 0.40 -7.43 16 29 H -0.30 -8.13 7.11 56.52 0.40 -7.72 16 30 H -0.26 -6.49 4.67 56.52 0.26 -6.22 16 31 H 0.06 1.14 7.42 -51.93 -0.39 0.75 16 32 H 0.06 1.23 7.63 -51.93 -0.40 0.84 16 33 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 36 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.06 0.87 8.14 -51.92 -0.42 0.45 16 38 H 0.41 5.76 7.96 -40.82 -0.32 5.43 16 39 H 0.16 1.13 8.06 -52.49 -0.42 0.71 16 40 H 0.14 0.86 8.06 -52.49 -0.42 0.44 16 41 H 0.13 0.88 8.06 -52.48 -0.42 0.45 16 42 H 0.13 0.86 8.06 -52.48 -0.42 0.44 16 43 H 0.13 1.29 8.06 -52.49 -0.42 0.86 16 44 H 0.18 3.02 4.94 -52.50 -0.26 2.76 16 45 H 0.03 0.61 6.68 -51.93 -0.35 0.27 16 46 H 0.07 1.91 5.71 -51.93 -0.30 1.61 16 47 H 0.26 7.76 8.31 -40.82 -0.34 7.42 16 LS Contribution 369.96 15.07 5.58 5.58 Total: -1.00 -33.25 369.96 -10.25 -43.50 By element: Atomic # 1 Polarization: 13.19 SS G_CDS: -6.66 Total: 6.53 kcal Atomic # 6 Polarization: 1.38 SS G_CDS: -4.66 Total: -3.28 kcal Atomic # 7 Polarization: -58.94 SS G_CDS: -0.05 Total: -58.99 kcal Atomic # 8 Polarization: -10.78 SS G_CDS: 0.07 Total: -10.71 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -4.54 Total: 17.38 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -33.25 -10.25 -43.50 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071775641.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.334 kcal (2) G-P(sol) polarization free energy of solvation -33.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.498 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds