Wall clock time and date at job start Tue Mar 31 2020 23:57:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.69768 * 2 1 4 4 C 1.53190 * 109.58831 * 239.64636 * 2 1 3 5 5 C 1.53036 * 109.31394 * 185.57830 * 4 2 1 6 6 C 1.53041 * 109.53077 * 61.36716 * 5 4 2 7 7 H 1.09006 * 109.49554 * 58.57634 * 6 5 4 8 8 N 1.46493 * 109.50190 * 178.68080 * 6 5 4 9 9 C 1.34778 * 119.99889 * 205.00209 * 8 6 5 10 10 O 1.21533 * 120.00507 * 359.97438 * 9 8 6 11 11 C 1.47952 * 119.99578 * 179.97438 * 9 8 6 12 12 N 1.32200 * 120.16113 * 1.83178 * 11 9 8 13 13 C 1.32034 * 122.68110 * 179.69754 * 12 11 9 14 14 C 1.36680 * 122.02542 * 0.58394 * 13 12 11 15 15 C 1.40531 * 118.85217 * 359.72215 * 14 13 12 16 16 C 1.40316 * 122.22047 * 179.97438 * 15 14 13 17 17 C 1.36198 * 119.45513 * 180.02562 * 16 15 14 18 18 C 1.39382 * 121.00242 * 359.97438 * 17 16 15 19 19 C 1.36255 * 121.07896 * 359.97438 * 18 17 16 20 20 C 1.40093 * 119.54457 * 0.02562 * 19 18 17 21 21 C 1.53202 * 109.31098 * 298.61776 * 6 5 4 22 22 N 1.46925 * 109.58527 * 120.34899 * 2 1 3 23 23 C 1.36933 * 120.63260 * 353.38116 * 22 2 1 24 24 H 1.08000 * 119.99985 * 26.32973 * 23 22 2 25 25 C 1.38817 * 119.99771 * 206.33016 * 23 22 2 26 26 N 1.31623 * 119.99645 * 217.43303 * 25 23 22 27 27 Si 1.86797 * 120.00286 * 37.43013 * 25 23 22 28 28 H 1.48501 * 109.47164 * 84.37510 * 27 25 23 29 29 H 1.48495 * 109.47448 * 204.37753 * 27 25 23 30 30 H 1.48499 * 109.46970 * 324.37608 * 27 25 23 31 31 H 1.09006 * 109.47339 * 180.35954 * 1 2 3 32 32 H 1.09001 * 109.47368 * 300.35651 * 1 2 3 33 33 H 1.08999 * 109.47330 * 60.35815 * 1 2 3 34 34 H 1.08998 * 109.49763 * 65.62366 * 4 2 1 35 35 H 1.09004 * 109.52009 * 305.54420 * 4 2 1 36 36 H 1.08997 * 109.46109 * 181.38569 * 5 4 2 37 37 H 1.09008 * 109.45845 * 301.36020 * 5 4 2 38 38 H 0.97006 * 120.00198 * 24.99671 * 8 6 5 39 39 H 1.07995 * 118.98150 * 180.28027 * 13 12 11 40 40 H 1.08000 * 120.57246 * 179.69724 * 14 13 12 41 41 H 1.08007 * 120.27329 * 359.97438 * 16 15 14 42 42 H 1.08009 * 119.50111 * 179.97438 * 17 16 15 43 43 H 1.08001 * 119.45925 * 179.97438 * 18 17 16 44 44 H 1.08006 * 120.22832 * 179.97438 * 19 18 17 45 45 H 1.08991 * 109.59635 * 294.86577 * 21 6 5 46 46 H 1.09000 * 109.70159 * 174.50231 * 21 6 5 47 47 H 0.97003 * 119.99884 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0262 0.0000 4 6 2.0436 -0.7293 -1.2454 5 6 3.5675 -0.8479 -1.1701 6 6 3.9567 -1.6658 0.0635 7 1 3.4978 -2.6528 0.0052 8 7 5.4139 -1.8056 0.1177 9 6 5.9670 -2.8486 0.7679 10 8 5.2570 -3.6729 1.3096 11 6 7.4388 -2.9900 0.8222 12 7 8.2149 -2.0762 0.2652 13 6 9.5330 -2.1497 0.2891 14 6 10.1903 -3.1891 0.8855 15 6 9.4374 -4.2064 1.4963 16 6 10.0387 -5.3055 2.1282 17 6 9.2544 -6.2598 2.7020 18 6 7.8645 -6.1605 2.6713 19 6 7.2478 -5.1063 2.0672 20 6 8.0217 -4.1051 1.4661 21 6 3.4650 -0.9468 1.3238 22 7 2.0225 -0.6994 1.1946 23 6 1.1537 -1.1126 2.1690 24 1 0.1245 -1.3252 1.9201 25 6 1.5958 -1.2581 3.4768 26 7 1.1436 -2.2472 4.2181 27 14 2.8326 -0.0502 4.1845 28 1 2.1183 1.1471 4.6958 29 1 3.5749 -0.6962 5.2966 30 1 3.7878 0.3587 3.1236 31 1 -0.3634 -1.0277 0.0064 32 1 -0.3634 0.5194 0.8868 33 1 -0.3634 0.5082 -0.8932 34 1 1.7660 -0.1668 -2.1368 35 1 1.6030 -1.7253 -1.2919 36 1 3.9378 -1.3447 -2.0668 37 1 4.0061 0.1475 -1.0990 38 1 5.9807 -1.1476 -0.3143 39 1 10.1093 -1.3668 -0.1813 40 1 11.2696 -3.2280 0.8871 41 1 11.1147 -5.3945 2.1585 42 1 9.7165 -7.1063 3.1882 43 1 7.2665 -6.9318 3.1339 44 1 6.1696 -5.0434 2.0511 45 1 3.9902 0.0022 1.4317 46 1 3.6520 -1.5694 2.1987 47 1 1.4523 -2.3487 5.1321 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071775641.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:57:32 Heat of formation + Delta-G solvation = 33.381586 kcal Electronic energy + Delta-G solvation = -29590.479352 eV Core-core repulsion = 25738.159115 eV Total energy + Delta-G solvation = -3852.320237 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.21248 -40.73341 -39.34438 -38.39969 -36.17381 -34.68984 -34.04999 -32.56983 -32.36754 -32.17299 -30.59307 -27.94512 -26.90357 -25.80616 -24.54783 -24.40831 -23.77983 -22.27474 -21.85646 -20.98884 -19.30259 -18.51264 -18.46127 -18.19615 -17.46194 -16.88039 -16.73758 -16.47286 -16.24776 -15.79418 -15.54439 -15.36929 -15.18665 -14.90236 -14.70633 -14.56465 -14.42846 -14.28030 -13.93277 -13.74984 -13.50376 -13.18177 -13.00715 -12.78868 -12.74552 -12.63145 -12.51575 -12.35211 -12.11806 -11.76517 -11.62975 -11.38990 -11.29794 -11.22459 -11.08636 -10.61571 -10.50148 -10.18766 -10.14125 -9.10334 -8.91343 -8.23666 -5.34765 -1.01761 -0.15160 0.66472 1.29629 1.36162 1.40679 1.59526 1.92127 2.18064 2.45590 2.88092 3.03827 3.07929 3.42583 3.58212 3.68183 3.77984 3.83197 3.88164 4.03681 4.13180 4.17096 4.24752 4.29271 4.38762 4.42535 4.47926 4.63159 4.69105 4.71056 4.80285 4.84721 4.94558 4.97857 5.03075 5.05178 5.08057 5.14066 5.17069 5.26483 5.36513 5.39350 5.51439 5.52886 5.62555 5.65817 5.87358 5.89101 6.17599 6.35154 6.74466 6.93576 7.12918 7.69048 8.10297 8.94122 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.013340 B = 0.003585 C = 0.003183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2098.449353 B = 7808.951208 C = 8794.608484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.154 3.846 3 H 0.045 0.955 4 C -0.118 4.118 5 C -0.107 4.107 6 C 0.132 3.868 7 H 0.059 0.941 8 N -0.689 5.689 9 C 0.558 3.442 10 O -0.560 6.560 11 C 0.089 3.911 12 N -0.460 5.460 13 C 0.055 3.945 14 C -0.103 4.103 15 C -0.053 4.053 16 C -0.105 4.105 17 C -0.100 4.100 18 C -0.116 4.116 19 C -0.137 4.137 20 C -0.088 4.088 21 C 0.144 3.856 22 N -0.605 5.605 23 C -0.251 4.251 24 H 0.068 0.932 25 C -0.012 4.012 26 N -0.927 5.927 27 Si 0.878 3.122 28 H -0.291 1.291 29 H -0.313 1.313 30 H -0.238 1.238 31 H 0.038 0.962 32 H 0.039 0.961 33 H 0.084 0.916 34 H 0.103 0.897 35 H 0.049 0.951 36 H 0.086 0.914 37 H 0.083 0.917 38 H 0.419 0.581 39 H 0.199 0.801 40 H 0.191 0.809 41 H 0.176 0.824 42 H 0.164 0.836 43 H 0.139 0.861 44 H 0.139 0.861 45 H 0.033 0.967 46 H 0.026 0.974 47 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.817 -1.512 -12.617 26.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.050 3.950 3 H 0.063 0.937 4 C -0.158 4.158 5 C -0.145 4.145 6 C 0.026 3.974 7 H 0.077 0.923 8 N -0.340 5.340 9 C 0.344 3.656 10 O -0.439 6.439 11 C -0.060 4.060 12 N -0.172 5.172 13 C -0.092 4.092 14 C -0.123 4.123 15 C -0.059 4.059 16 C -0.122 4.122 17 C -0.119 4.119 18 C -0.134 4.134 19 C -0.156 4.156 20 C -0.091 4.091 21 C 0.017 3.983 22 N -0.330 5.330 23 C -0.380 4.380 24 H 0.086 0.914 25 C -0.210 4.210 26 N -0.571 5.571 27 Si 0.706 3.294 28 H -0.219 1.219 29 H -0.241 1.241 30 H -0.162 1.162 31 H 0.057 0.943 32 H 0.059 0.941 33 H 0.102 0.898 34 H 0.121 0.879 35 H 0.068 0.932 36 H 0.105 0.895 37 H 0.101 0.899 38 H 0.257 0.743 39 H 0.216 0.784 40 H 0.208 0.792 41 H 0.194 0.806 42 H 0.181 0.819 43 H 0.157 0.843 44 H 0.156 0.844 45 H 0.050 0.950 46 H 0.044 0.956 47 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 21.952 -1.379 -12.577 25.337 hybrid contribution 0.374 -0.143 1.680 1.727 sum 22.326 -1.522 -10.898 24.890 Atomic orbital electron populations 1.21755 0.94791 1.00979 1.01351 1.20916 0.94322 0.94050 0.85754 0.93684 1.21956 0.94272 1.01025 0.98501 1.21673 0.97152 1.00277 0.95419 1.21572 0.78527 0.99832 0.97516 0.92316 1.45818 1.07856 1.26347 1.53978 1.18310 0.86958 0.81734 0.78549 1.90655 1.63130 1.43320 1.46794 1.21068 0.92827 0.93168 0.98980 1.67194 1.08576 1.26280 1.15197 1.22891 0.88494 0.99369 0.98429 1.22676 1.03253 0.92138 0.94193 1.18620 0.91020 0.97515 0.98706 1.21434 1.02006 0.92067 0.96737 1.21465 0.92734 0.99933 0.97734 1.21426 0.96331 0.97696 0.97910 1.22062 1.02526 0.94045 0.96938 1.18896 0.94932 0.95637 0.99606 1.21575 0.84673 0.96286 0.95789 1.44543 1.01901 1.66018 1.20531 1.18793 0.94673 1.37447 0.87089 0.91434 1.25657 0.99149 0.98830 0.97345 1.70223 1.48656 1.28283 1.09950 0.86953 0.81146 0.82327 0.78944 1.21854 1.24140 1.16246 0.94328 0.94133 0.89760 0.87878 0.93185 0.89523 0.89882 0.74315 0.78449 0.79180 0.80619 0.81856 0.84295 0.84413 0.94951 0.95567 0.93413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.66 7.93 71.98 0.57 -4.09 16 2 C 0.15 5.70 3.50 44.97 0.16 5.86 16 3 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 4 C -0.12 -3.47 5.37 30.67 0.16 -3.31 16 5 C -0.11 -2.99 5.35 30.62 0.16 -2.83 16 6 C 0.13 5.01 2.60 45.07 0.12 5.13 16 7 H 0.06 2.65 7.58 -2.38 -0.02 2.63 16 8 N -0.69 -23.52 5.07 -444.93 -2.26 -25.78 16 9 C 0.56 21.67 7.76 86.82 0.67 22.34 16 10 O -0.56 -26.36 13.08 -3.82 -0.05 -26.41 16 11 C 0.09 2.91 6.82 42.43 0.29 3.20 16 12 N -0.46 -12.04 9.51 -184.95 -1.76 -13.80 16 13 C 0.06 0.96 11.06 84.30 0.93 1.89 16 14 C -0.10 -1.52 9.88 22.46 0.22 -1.30 16 15 C -0.05 -1.14 5.75 -21.29 -0.12 -1.26 16 16 C -0.11 -1.61 9.82 22.30 0.22 -1.40 16 17 C -0.10 -1.69 9.95 22.07 0.22 -1.47 16 18 C -0.12 -2.81 9.95 22.08 0.22 -2.59 16 19 C -0.14 -4.46 9.23 22.26 0.21 -4.26 16 20 C -0.09 -2.68 5.76 -21.14 -0.12 -2.80 16 21 C 0.14 6.70 3.91 86.37 0.34 7.04 16 22 N -0.61 -29.28 2.74 -675.22 -1.85 -31.13 16 23 C -0.25 -14.57 8.92 84.04 0.75 -13.82 16 24 H 0.07 4.13 6.29 -2.91 -0.02 4.11 16 25 C -0.01 -0.77 4.79 84.86 0.41 -0.36 16 26 N -0.93 -61.37 13.97 21.65 0.30 -61.07 16 27 Si 0.88 47.81 26.69 68.60 1.83 49.64 16 28 H -0.29 -15.57 7.11 99.48 0.71 -14.86 16 29 H -0.31 -17.73 7.11 99.48 0.71 -17.03 16 30 H -0.24 -12.07 4.67 99.48 0.46 -11.60 16 31 H 0.04 1.50 7.42 -2.38 -0.02 1.48 16 32 H 0.04 1.59 7.63 -2.39 -0.02 1.57 16 33 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 34 H 0.10 2.22 8.14 -2.39 -0.02 2.20 16 35 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 36 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 37 H 0.08 2.02 8.14 -2.38 -0.02 2.00 16 38 H 0.42 11.64 7.96 -92.70 -0.74 10.90 16 39 H 0.20 1.78 8.06 -2.91 -0.02 1.76 16 40 H 0.19 0.89 8.06 -2.91 -0.02 0.87 16 41 H 0.18 1.12 8.06 -2.91 -0.02 1.10 16 42 H 0.16 1.53 8.06 -2.91 -0.02 1.50 16 43 H 0.14 2.91 8.06 -2.91 -0.02 2.89 16 44 H 0.14 5.54 4.94 -3.18 -0.02 5.52 16 45 H 0.03 1.47 6.68 -2.39 -0.02 1.46 16 46 H 0.03 1.45 5.71 -2.39 -0.01 1.44 16 47 H 0.26 16.40 8.31 -92.71 -0.77 15.63 16 Total: -1.00 -83.24 369.96 1.64 -81.60 By element: Atomic # 1 Polarization: 20.94 SS G_CDS: 0.02 Total: 20.96 kcal Atomic # 6 Polarization: 0.57 SS G_CDS: 5.41 Total: 5.98 kcal Atomic # 7 Polarization: -126.21 SS G_CDS: -5.56 Total: -131.77 kcal Atomic # 8 Polarization: -26.36 SS G_CDS: -0.05 Total: -26.41 kcal Atomic # 14 Polarization: 47.81 SS G_CDS: 1.83 Total: 49.64 kcal Total: -83.24 1.64 -81.60 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071775641.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.982 kcal (2) G-P(sol) polarization free energy of solvation -83.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.600 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds