Wall clock time and date at job start Tue Mar 31 2020 23:57:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.58685 * 2 1 4 4 C 1.53189 * 109.58840 * 120.42438 * 2 1 3 5 5 C 1.53032 * 109.31852 * 174.42247 * 4 2 1 6 6 C 1.53047 * 109.53945 * 298.64019 * 5 4 2 7 7 H 1.09010 * 109.49190 * 301.40891 * 6 5 4 8 8 N 1.46500 * 109.52507 * 181.33004 * 6 5 4 9 9 C 1.34779 * 119.99837 * 155.14276 * 8 6 5 10 10 O 1.21541 * 120.00144 * 359.97438 * 9 8 6 11 11 C 1.47949 * 119.99947 * 179.97438 * 9 8 6 12 12 N 1.32197 * 120.15522 * 5.45077 * 11 9 8 13 13 C 1.32028 * 122.67809 * 179.74720 * 12 11 9 14 14 C 1.36694 * 122.02879 * 0.53574 * 13 12 11 15 15 C 1.40534 * 118.84611 * 359.74171 * 14 13 12 16 16 C 1.40317 * 122.22556 * 179.97438 * 15 14 13 17 17 C 1.36204 * 119.45343 * 180.02562 * 16 15 14 18 18 C 1.39387 * 121.00552 * 0.02562 * 17 16 15 19 19 C 1.36259 * 121.07430 * 0.02562 * 18 17 16 20 20 C 1.40090 * 119.54294 * 359.97438 * 19 18 17 21 21 C 1.53193 * 109.31414 * 61.35917 * 6 5 4 22 22 N 1.46925 * 109.58864 * 239.71631 * 2 1 3 23 23 C 1.36941 * 120.62934 * 6.62241 * 22 2 1 24 24 H 1.07998 * 120.00312 * 329.89336 * 23 22 2 25 25 C 1.38810 * 119.99658 * 149.89239 * 23 22 2 26 26 N 1.31621 * 120.00155 * 344.98428 * 25 23 22 27 27 Si 1.86803 * 119.99777 * 164.98220 * 25 23 22 28 28 H 1.48506 * 109.47031 * 60.00252 * 27 25 23 29 29 H 1.48499 * 109.46989 * 179.97438 * 27 25 23 30 30 H 1.48493 * 109.47301 * 299.99944 * 27 25 23 31 31 H 1.09002 * 109.47181 * 180.28367 * 1 2 3 32 32 H 1.08994 * 109.47146 * 300.28449 * 1 2 3 33 33 H 1.09004 * 109.46917 * 60.28471 * 1 2 3 34 34 H 1.08998 * 109.50149 * 294.37936 * 4 2 1 35 35 H 1.09004 * 109.49693 * 54.47084 * 4 2 1 36 36 H 1.08999 * 109.46621 * 178.61472 * 5 4 2 37 37 H 1.09003 * 109.46047 * 58.65097 * 5 4 2 38 38 H 0.96995 * 119.99674 * 335.14183 * 8 6 5 39 39 H 1.07999 * 118.99090 * 180.29702 * 13 12 11 40 40 H 1.07997 * 120.57339 * 179.76158 * 14 13 12 41 41 H 1.08001 * 120.27463 * 0.02562 * 16 15 14 42 42 H 1.08005 * 119.49925 * 180.02562 * 17 16 15 43 43 H 1.08000 * 119.46184 * 180.02562 * 18 17 16 44 44 H 1.08009 * 120.22441 * 180.02562 * 19 18 17 45 45 H 1.09000 * 109.58360 * 185.58301 * 21 6 5 46 46 H 1.08997 * 109.58589 * 65.15483 * 21 6 5 47 47 H 0.96999 * 119.99834 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0436 -0.7309 1.2445 5 6 3.5674 -0.8494 1.1692 6 6 3.9569 -1.6656 -0.0655 7 1 3.4983 -2.6529 -0.0084 8 7 5.4142 -1.8058 -0.1200 9 6 5.9670 -2.8465 -0.7742 10 8 5.2566 -3.6688 -1.3185 11 6 7.4387 -2.9878 -0.8297 12 7 8.2116 -2.1581 -0.1502 13 6 9.5292 -2.2417 -0.1600 14 6 10.1899 -3.1921 -0.8871 15 6 9.4407 -4.1104 -1.6423 16 6 10.0453 -5.1140 -2.4143 17 6 9.2643 -5.9741 -3.1252 18 6 7.8745 -5.8718 -3.0976 19 6 7.2546 -4.9087 -2.3595 20 6 8.0252 -4.0059 -1.6153 21 6 3.4651 -0.9453 -1.3249 22 7 2.0226 -0.6980 -1.1953 23 6 1.1537 -1.1100 -2.1703 24 1 0.1409 -1.3815 -1.9116 25 6 1.5748 -1.1788 -3.4912 26 7 2.6882 -0.5808 -3.8590 27 14 0.5613 -2.1199 -4.7468 28 1 -0.7964 -1.5246 -4.8336 29 1 1.2214 -2.0416 -6.0748 30 1 0.4530 -3.5412 -4.3305 31 1 -0.3634 -1.0277 0.0051 32 1 -0.3633 0.5182 0.8874 33 1 -0.3633 0.5094 -0.8926 34 1 1.7660 -0.1695 2.1366 35 1 1.6030 -1.7269 1.2892 36 1 3.9378 -1.3473 2.0653 37 1 4.0061 0.1460 1.0995 38 1 5.9811 -1.1497 0.3147 39 1 10.1029 -1.5351 0.4214 40 1 11.2690 -3.2366 -0.8811 41 1 11.1212 -5.2037 -2.4446 42 1 9.7290 -6.7471 -3.7194 43 1 7.2792 -6.5674 -3.6706 44 1 6.1767 -4.8422 -2.3478 45 1 3.6519 -1.5691 -2.1990 46 1 3.9903 0.0038 -1.4316 47 1 2.9826 -0.6291 -4.7820 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071775642.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:57:37 Heat of formation + Delta-G solvation = 45.481882 kcal Electronic energy + Delta-G solvation = -29504.917122 eV Core-core repulsion = 25653.121593 eV Total energy + Delta-G solvation = -3851.795529 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.12778 -39.20696 -37.58711 -37.40738 -34.46385 -33.03021 -32.78169 -31.25615 -30.82589 -29.87973 -29.49673 -26.23410 -25.22914 -24.49935 -23.59604 -22.80234 -22.21793 -20.87144 -20.18290 -19.28464 -18.11983 -17.47374 -17.10430 -16.39785 -15.91132 -15.59390 -15.25219 -14.92838 -14.62899 -14.40524 -13.92295 -13.81925 -13.74419 -13.58332 -13.32402 -13.28958 -12.96574 -12.66575 -12.36083 -12.20770 -11.93603 -11.79338 -11.51085 -11.39590 -11.08557 -10.87023 -10.67330 -10.50079 -10.37891 -10.25323 -10.22112 -9.94957 -9.92981 -9.66579 -9.42621 -9.21813 -9.19753 -8.56416 -8.38589 -8.13873 -6.56685 -5.70820 -3.16121 0.01382 0.79328 1.68949 2.72241 3.29001 3.37569 3.44844 3.50292 3.52071 4.08636 4.16206 4.44695 4.55809 4.67354 4.70081 4.79969 5.00109 5.13687 5.20887 5.33963 5.38627 5.40876 5.50844 5.59956 5.63604 5.70684 5.76589 5.92871 6.00104 6.02350 6.15860 6.26011 6.30817 6.32594 6.42755 6.43341 6.47111 6.50669 6.58421 6.66785 6.75447 6.81026 7.00992 7.08338 7.16380 7.34215 7.61937 7.76357 7.88682 7.97651 8.52742 8.57182 9.27818 9.91953 10.48016 11.37244 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.012312 B = 0.003582 C = 0.002954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2273.622452 B = 7814.068871 C = 9477.485331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.164 3.836 3 H 0.025 0.975 4 C -0.125 4.125 5 C -0.116 4.116 6 C 0.114 3.886 7 H 0.084 0.916 8 N -0.693 5.693 9 C 0.567 3.433 10 O -0.522 6.522 11 C 0.136 3.864 12 N -0.461 5.461 13 C 0.074 3.926 14 C -0.139 4.139 15 C -0.030 4.030 16 C -0.125 4.125 17 C -0.092 4.092 18 C -0.127 4.127 19 C -0.084 4.084 20 C -0.073 4.073 21 C 0.169 3.831 22 N -0.583 5.583 23 C -0.254 4.254 24 H 0.069 0.931 25 C 0.008 3.992 26 N -0.900 5.900 27 Si 0.900 3.100 28 H -0.283 1.283 29 H -0.291 1.291 30 H -0.283 1.283 31 H 0.053 0.947 32 H 0.037 0.963 33 H 0.061 0.939 34 H 0.055 0.945 35 H 0.061 0.939 36 H 0.052 0.948 37 H 0.060 0.940 38 H 0.404 0.596 39 H 0.159 0.841 40 H 0.140 0.860 41 H 0.130 0.870 42 H 0.125 0.875 43 H 0.128 0.872 44 H 0.176 0.824 45 H 0.093 0.907 46 H 0.018 0.982 47 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.022 -5.780 7.932 17.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.058 3.942 3 H 0.043 0.957 4 C -0.165 4.165 5 C -0.155 4.155 6 C 0.009 3.991 7 H 0.103 0.897 8 N -0.342 5.342 9 C 0.351 3.649 10 O -0.398 6.398 11 C -0.016 4.016 12 N -0.173 5.173 13 C -0.072 4.072 14 C -0.159 4.159 15 C -0.035 4.035 16 C -0.143 4.143 17 C -0.111 4.111 18 C -0.146 4.146 19 C -0.103 4.103 20 C -0.076 4.076 21 C 0.042 3.958 22 N -0.306 5.306 23 C -0.383 4.383 24 H 0.087 0.913 25 C -0.191 4.191 26 N -0.544 5.544 27 Si 0.730 3.270 28 H -0.209 1.209 29 H -0.217 1.217 30 H -0.209 1.209 31 H 0.072 0.928 32 H 0.056 0.944 33 H 0.080 0.920 34 H 0.074 0.926 35 H 0.080 0.920 36 H 0.070 0.930 37 H 0.079 0.921 38 H 0.239 0.761 39 H 0.176 0.824 40 H 0.158 0.842 41 H 0.148 0.852 42 H 0.143 0.857 43 H 0.146 0.854 44 H 0.193 0.807 45 H 0.112 0.888 46 H 0.036 0.964 47 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 14.238 -5.626 7.902 17.229 hybrid contribution 0.592 -0.730 -1.039 1.401 sum 14.831 -6.356 6.864 17.534 Atomic orbital electron populations 1.21800 0.96005 1.01357 1.00208 1.20498 0.93063 0.93594 0.87057 0.95714 1.22040 0.94239 1.01321 0.98917 1.21676 0.97385 0.99766 0.96623 1.22115 0.77289 1.01139 0.98603 0.89743 1.45952 1.08819 1.26116 1.53318 1.17670 0.85297 0.82338 0.79565 1.90620 1.61558 1.42331 1.45280 1.21591 0.94439 0.91722 0.93855 1.67286 1.06944 1.24272 1.18764 1.22167 0.89604 0.97553 0.97876 1.22089 1.01012 0.95611 0.97215 1.18194 0.92328 0.96036 0.96937 1.20877 0.99845 0.95468 0.98146 1.21074 0.94140 0.98245 0.97635 1.21137 0.94478 0.99233 0.99703 1.22305 1.03836 0.91766 0.92353 1.18724 0.93073 0.97116 0.98713 1.21070 0.83640 0.96938 0.94134 1.44008 1.02568 1.64822 1.19211 1.19088 0.95161 1.38187 0.85905 0.91297 1.25091 0.97749 0.99235 0.97058 1.69994 1.23895 1.43711 1.16786 0.86414 0.79509 0.80373 0.80729 1.20938 1.21718 1.20892 0.92821 0.94367 0.91988 0.92637 0.92047 0.92955 0.92140 0.76113 0.82425 0.84224 0.85181 0.85662 0.85365 0.80678 0.88842 0.96374 0.93685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.57 7.95 37.16 0.30 -2.27 16 2 C 0.16 3.39 3.50 -67.60 -0.24 3.15 16 3 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 4 C -0.13 -2.15 5.37 -26.62 -0.14 -2.29 16 5 C -0.12 -1.93 5.36 -26.69 -0.14 -2.07 16 6 C 0.11 2.24 2.60 -67.81 -0.18 2.07 16 7 H 0.08 1.85 7.58 -51.92 -0.39 1.46 16 8 N -0.69 -12.23 5.07 -54.59 -0.28 -12.51 16 9 C 0.57 10.63 7.74 -12.28 -0.10 10.54 16 10 O -0.52 -11.17 13.10 5.33 0.07 -11.10 16 11 C 0.14 2.22 6.81 -82.55 -0.56 1.66 16 12 N -0.46 -6.59 9.52 -9.81 -0.09 -6.69 16 13 C 0.07 0.82 11.06 -18.03 -0.20 0.62 16 14 C -0.14 -1.42 9.88 -39.28 -0.39 -1.81 16 15 C -0.03 -0.37 5.75 -106.82 -0.61 -0.99 16 16 C -0.13 -1.28 9.82 -39.53 -0.39 -1.67 16 17 C -0.09 -0.93 9.95 -39.89 -0.40 -1.33 16 18 C -0.13 -1.56 9.95 -39.87 -0.40 -1.96 16 19 C -0.08 -1.29 9.23 -39.60 -0.37 -1.65 16 20 C -0.07 -1.13 5.76 -106.60 -0.61 -1.74 16 21 C 0.17 4.12 4.85 -3.71 -0.02 4.11 16 22 N -0.58 -14.54 2.99 -164.78 -0.49 -15.04 16 23 C -0.25 -6.95 8.56 -15.06 -0.13 -7.07 16 24 H 0.07 1.83 6.25 -52.49 -0.33 1.50 16 25 C 0.01 0.22 4.95 -17.43 -0.09 0.13 16 26 N -0.90 -26.74 11.22 55.49 0.62 -26.11 16 27 Si 0.90 22.32 29.58 -169.99 -5.03 17.29 16 28 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 29 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 30 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 31 H 0.05 1.02 7.44 -51.93 -0.39 0.64 16 32 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.06 1.26 7.63 -51.93 -0.40 0.87 16 34 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 35 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 36 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 38 H 0.40 6.24 7.97 -40.82 -0.33 5.91 16 39 H 0.16 1.21 8.06 -52.49 -0.42 0.78 16 40 H 0.14 0.92 8.06 -52.49 -0.42 0.50 16 41 H 0.13 0.92 8.06 -52.49 -0.42 0.50 16 42 H 0.13 0.90 8.06 -52.48 -0.42 0.48 16 43 H 0.13 1.31 8.06 -52.49 -0.42 0.89 16 44 H 0.18 3.09 4.96 -52.49 -0.26 2.83 16 45 H 0.09 2.66 6.15 -51.93 -0.32 2.34 16 46 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 47 H 0.25 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 375.47 15.07 5.66 5.66 Total: -1.00 -32.23 375.47 -10.81 -43.04 By element: Atomic # 1 Polarization: 14.65 SS G_CDS: -6.62 Total: 8.03 kcal Atomic # 6 Polarization: 2.07 SS G_CDS: -4.66 Total: -2.58 kcal Atomic # 7 Polarization: -60.10 SS G_CDS: -0.24 Total: -60.34 kcal Atomic # 8 Polarization: -11.17 SS G_CDS: 0.07 Total: -11.10 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.03 Total: 17.29 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -32.23 -10.81 -43.04 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071775642.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.527 kcal (2) G-P(sol) polarization free energy of solvation -32.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.045 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds