Wall clock time and date at job start Tue Mar 31 2020 23:57:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.58685 * 2 1 4 4 C 1.53189 * 109.58840 * 120.42438 * 2 1 3 5 5 C 1.53032 * 109.31852 * 174.42247 * 4 2 1 6 6 C 1.53047 * 109.53945 * 298.64019 * 5 4 2 7 7 H 1.09010 * 109.49190 * 301.40891 * 6 5 4 8 8 N 1.46500 * 109.52507 * 181.33004 * 6 5 4 9 9 C 1.34779 * 119.99837 * 155.14276 * 8 6 5 10 10 O 1.21541 * 120.00144 * 359.97438 * 9 8 6 11 11 C 1.47949 * 119.99947 * 179.97438 * 9 8 6 12 12 N 1.32197 * 120.15522 * 5.45077 * 11 9 8 13 13 C 1.32028 * 122.67809 * 179.74720 * 12 11 9 14 14 C 1.36694 * 122.02879 * 0.53574 * 13 12 11 15 15 C 1.40534 * 118.84611 * 359.74171 * 14 13 12 16 16 C 1.40317 * 122.22556 * 179.97438 * 15 14 13 17 17 C 1.36204 * 119.45343 * 180.02562 * 16 15 14 18 18 C 1.39387 * 121.00552 * 0.02562 * 17 16 15 19 19 C 1.36259 * 121.07430 * 0.02562 * 18 17 16 20 20 C 1.40090 * 119.54294 * 359.97438 * 19 18 17 21 21 C 1.53193 * 109.31414 * 61.35917 * 6 5 4 22 22 N 1.46925 * 109.58864 * 239.71631 * 2 1 3 23 23 C 1.36941 * 120.62934 * 6.62241 * 22 2 1 24 24 H 1.07998 * 120.00312 * 329.89336 * 23 22 2 25 25 C 1.38810 * 119.99658 * 149.89239 * 23 22 2 26 26 N 1.31621 * 120.00155 * 344.98428 * 25 23 22 27 27 Si 1.86803 * 119.99777 * 164.98220 * 25 23 22 28 28 H 1.48506 * 109.47031 * 60.00252 * 27 25 23 29 29 H 1.48499 * 109.46989 * 179.97438 * 27 25 23 30 30 H 1.48493 * 109.47301 * 299.99944 * 27 25 23 31 31 H 1.09002 * 109.47181 * 180.28367 * 1 2 3 32 32 H 1.08994 * 109.47146 * 300.28449 * 1 2 3 33 33 H 1.09004 * 109.46917 * 60.28471 * 1 2 3 34 34 H 1.08998 * 109.50149 * 294.37936 * 4 2 1 35 35 H 1.09004 * 109.49693 * 54.47084 * 4 2 1 36 36 H 1.08999 * 109.46621 * 178.61472 * 5 4 2 37 37 H 1.09003 * 109.46047 * 58.65097 * 5 4 2 38 38 H 0.96995 * 119.99674 * 335.14183 * 8 6 5 39 39 H 1.07999 * 118.99090 * 180.29702 * 13 12 11 40 40 H 1.07997 * 120.57339 * 179.76158 * 14 13 12 41 41 H 1.08001 * 120.27463 * 0.02562 * 16 15 14 42 42 H 1.08005 * 119.49925 * 180.02562 * 17 16 15 43 43 H 1.08000 * 119.46184 * 180.02562 * 18 17 16 44 44 H 1.08009 * 120.22441 * 180.02562 * 19 18 17 45 45 H 1.09000 * 109.58360 * 185.58301 * 21 6 5 46 46 H 1.08997 * 109.58589 * 65.15483 * 21 6 5 47 47 H 0.96999 * 119.99834 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0436 -0.7309 1.2445 5 6 3.5674 -0.8494 1.1692 6 6 3.9569 -1.6656 -0.0655 7 1 3.4983 -2.6529 -0.0084 8 7 5.4142 -1.8058 -0.1200 9 6 5.9670 -2.8465 -0.7742 10 8 5.2566 -3.6688 -1.3185 11 6 7.4387 -2.9878 -0.8297 12 7 8.2116 -2.1581 -0.1502 13 6 9.5292 -2.2417 -0.1600 14 6 10.1899 -3.1921 -0.8871 15 6 9.4407 -4.1104 -1.6423 16 6 10.0453 -5.1140 -2.4143 17 6 9.2643 -5.9741 -3.1252 18 6 7.8745 -5.8718 -3.0976 19 6 7.2546 -4.9087 -2.3595 20 6 8.0252 -4.0059 -1.6153 21 6 3.4651 -0.9453 -1.3249 22 7 2.0226 -0.6980 -1.1953 23 6 1.1537 -1.1100 -2.1703 24 1 0.1409 -1.3815 -1.9116 25 6 1.5748 -1.1788 -3.4912 26 7 2.6882 -0.5808 -3.8590 27 14 0.5613 -2.1199 -4.7468 28 1 -0.7964 -1.5246 -4.8336 29 1 1.2214 -2.0416 -6.0748 30 1 0.4530 -3.5412 -4.3305 31 1 -0.3634 -1.0277 0.0051 32 1 -0.3633 0.5182 0.8874 33 1 -0.3633 0.5094 -0.8926 34 1 1.7660 -0.1695 2.1366 35 1 1.6030 -1.7269 1.2892 36 1 3.9378 -1.3473 2.0653 37 1 4.0061 0.1460 1.0995 38 1 5.9811 -1.1497 0.3147 39 1 10.1029 -1.5351 0.4214 40 1 11.2690 -3.2366 -0.8811 41 1 11.1212 -5.2037 -2.4446 42 1 9.7290 -6.7471 -3.7194 43 1 7.2792 -6.5674 -3.6706 44 1 6.1767 -4.8422 -2.3478 45 1 3.6519 -1.5691 -2.1990 46 1 3.9903 0.0038 -1.4316 47 1 2.9826 -0.6291 -4.7820 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071775642.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:57:36 Heat of formation + Delta-G solvation = 24.876003 kcal Electronic energy + Delta-G solvation = -29505.810660 eV Core-core repulsion = 25653.121593 eV Total energy + Delta-G solvation = -3852.689067 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.17764 -40.63207 -39.19522 -38.38001 -36.09176 -34.67750 -34.02475 -32.35804 -32.15391 -31.76139 -30.56332 -27.85415 -26.99167 -25.76878 -24.51682 -24.10864 -23.74921 -22.28773 -21.70898 -20.96471 -19.25379 -18.49428 -18.30260 -18.15903 -17.33732 -16.87243 -16.74376 -16.31349 -15.94618 -15.68995 -15.50697 -15.30657 -15.10394 -14.83148 -14.69150 -14.56238 -14.27161 -14.12769 -13.90621 -13.48798 -13.16859 -13.07402 -12.77641 -12.75719 -12.70031 -12.57667 -12.48873 -12.30322 -12.14418 -11.99472 -11.65766 -11.40149 -11.20634 -11.16901 -11.05215 -10.54553 -10.47111 -10.18029 -10.13515 -9.07881 -8.62507 -7.85750 -5.33211 -0.99106 -0.13310 0.68817 1.40201 1.45553 1.50035 1.62915 1.99188 2.21569 2.49954 3.06079 3.07619 3.31043 3.57365 3.64539 3.75179 3.79906 3.88841 3.93684 4.07555 4.18713 4.23599 4.26152 4.37415 4.42058 4.46182 4.58589 4.70125 4.72665 4.77932 4.84512 4.88082 5.00272 5.04701 5.05937 5.09856 5.17824 5.28163 5.29979 5.37799 5.40519 5.53942 5.54777 5.59540 5.64455 5.69697 5.76839 5.89163 6.36787 6.44438 6.77709 7.13071 7.18836 7.88524 8.39139 9.19535 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.012312 B = 0.003582 C = 0.002954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2273.622452 B = 7814.068871 C = 9477.485331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.152 3.848 3 H 0.021 0.979 4 C -0.116 4.116 5 C -0.108 4.108 6 C 0.129 3.871 7 H 0.057 0.943 8 N -0.687 5.687 9 C 0.560 3.440 10 O -0.562 6.562 11 C 0.091 3.909 12 N -0.463 5.463 13 C 0.055 3.945 14 C -0.105 4.105 15 C -0.053 4.053 16 C -0.105 4.105 17 C -0.100 4.100 18 C -0.116 4.116 19 C -0.135 4.135 20 C -0.088 4.088 21 C 0.183 3.817 22 N -0.602 5.602 23 C -0.253 4.253 24 H 0.076 0.924 25 C -0.052 4.052 26 N -0.935 5.935 27 Si 0.958 3.042 28 H -0.267 1.267 29 H -0.297 1.297 30 H -0.284 1.284 31 H 0.047 0.953 32 H 0.079 0.921 33 H 0.038 0.962 34 H 0.097 0.903 35 H 0.054 0.946 36 H 0.084 0.916 37 H 0.071 0.929 38 H 0.415 0.585 39 H 0.198 0.802 40 H 0.192 0.808 41 H 0.177 0.823 42 H 0.165 0.835 43 H 0.140 0.860 44 H 0.137 0.863 45 H 0.042 0.958 46 H -0.006 1.006 47 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.102 -6.164 9.896 21.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.047 3.953 3 H 0.038 0.962 4 C -0.155 4.155 5 C -0.146 4.146 6 C 0.023 3.977 7 H 0.075 0.925 8 N -0.337 5.337 9 C 0.346 3.654 10 O -0.442 6.442 11 C -0.059 4.059 12 N -0.175 5.175 13 C -0.092 4.092 14 C -0.124 4.124 15 C -0.058 4.058 16 C -0.123 4.123 17 C -0.118 4.118 18 C -0.134 4.134 19 C -0.154 4.154 20 C -0.091 4.091 21 C 0.056 3.944 22 N -0.326 5.326 23 C -0.383 4.383 24 H 0.093 0.907 25 C -0.247 4.247 26 N -0.581 5.581 27 Si 0.786 3.214 28 H -0.192 1.192 29 H -0.224 1.224 30 H -0.210 1.210 31 H 0.066 0.934 32 H 0.098 0.902 33 H 0.057 0.943 34 H 0.116 0.884 35 H 0.073 0.927 36 H 0.103 0.897 37 H 0.090 0.910 38 H 0.253 0.747 39 H 0.215 0.785 40 H 0.209 0.791 41 H 0.194 0.806 42 H 0.182 0.818 43 H 0.158 0.842 44 H 0.155 0.845 45 H 0.061 0.939 46 H 0.012 0.988 47 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 17.294 -5.995 9.912 20.815 hybrid contribution -0.195 -0.629 -1.635 1.763 sum 17.099 -6.623 8.277 20.118 Atomic orbital electron populations 1.21727 0.94560 1.01224 1.01081 1.20822 0.94430 0.93339 0.86681 0.96153 1.21946 0.94151 1.01026 0.98421 1.21652 0.97373 0.99873 0.95680 1.21658 0.78437 0.99532 0.98058 0.92456 1.45807 1.07990 1.26445 1.53494 1.18265 0.86928 0.81730 0.78468 1.90611 1.63130 1.43727 1.46687 1.21094 0.92870 0.94439 0.97463 1.67194 1.08718 1.23570 1.18020 1.22895 0.88471 0.99000 0.98863 1.22672 1.03240 0.92812 0.93659 1.18621 0.90993 0.97824 0.98398 1.21432 1.02001 0.93276 0.95548 1.21465 0.92741 0.99435 0.98196 1.21417 0.96308 0.97745 0.97920 1.22031 1.02436 0.94857 0.96064 1.18892 0.94961 0.96702 0.98522 1.20706 0.83935 0.95063 0.94691 1.44306 1.02355 1.65725 1.20234 1.19457 0.95655 1.36684 0.86512 0.90652 1.25839 0.99047 1.00765 0.99078 1.70171 1.25786 1.45824 1.16364 0.85480 0.78754 0.78977 0.78180 1.19211 1.22378 1.21026 0.93425 0.90219 0.94321 0.88435 0.92683 0.89743 0.91049 0.74747 0.78525 0.79132 0.80592 0.81782 0.84223 0.84546 0.93936 0.98765 0.94692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.72 7.95 71.98 0.57 -4.15 16 2 C 0.15 6.26 3.50 44.97 0.16 6.41 16 3 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 4 C -0.12 -3.77 5.37 30.67 0.16 -3.60 16 5 C -0.11 -3.46 5.36 30.62 0.16 -3.30 16 6 C 0.13 5.39 2.60 45.07 0.12 5.51 16 7 H 0.06 2.71 7.58 -2.38 -0.02 2.69 16 8 N -0.69 -26.01 5.07 -444.91 -2.26 -28.27 16 9 C 0.56 23.16 7.74 86.82 0.67 23.83 16 10 O -0.56 -27.31 13.10 -3.85 -0.05 -27.36 16 11 C 0.09 3.17 6.81 42.43 0.29 3.46 16 12 N -0.46 -13.18 9.52 -184.95 -1.76 -14.94 16 13 C 0.05 1.06 11.06 84.30 0.93 1.99 16 14 C -0.10 -1.69 9.88 22.47 0.22 -1.47 16 15 C -0.05 -1.20 5.75 -21.29 -0.12 -1.33 16 16 C -0.11 -1.71 9.82 22.30 0.22 -1.49 16 17 C -0.10 -1.75 9.95 22.07 0.22 -1.53 16 18 C -0.12 -2.90 9.95 22.08 0.22 -2.68 16 19 C -0.13 -4.55 9.23 22.26 0.21 -4.34 16 20 C -0.09 -2.82 5.76 -21.14 -0.12 -2.94 16 21 C 0.18 9.63 4.85 86.36 0.42 10.05 16 22 N -0.60 -31.45 2.99 -675.24 -2.02 -33.47 16 23 C -0.25 -14.46 8.56 84.03 0.72 -13.74 16 24 H 0.08 4.13 6.25 -2.91 -0.02 4.11 16 25 C -0.05 -3.11 4.95 84.86 0.42 -2.69 16 26 N -0.94 -59.50 11.22 21.65 0.24 -59.26 16 27 Si 0.96 48.19 29.58 68.60 2.03 50.22 16 28 H -0.27 -12.59 7.11 99.48 0.71 -11.88 16 29 H -0.30 -15.12 7.11 99.48 0.71 -14.41 16 30 H -0.28 -14.17 7.11 99.48 0.71 -13.46 16 31 H 0.05 1.78 7.44 -2.39 -0.02 1.77 16 32 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 33 H 0.04 1.57 7.63 -2.38 -0.02 1.55 16 34 H 0.10 2.42 8.14 -2.39 -0.02 2.40 16 35 H 0.05 1.88 8.14 -2.38 -0.02 1.86 16 36 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 37 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 38 H 0.42 13.38 7.97 -92.71 -0.74 12.65 16 39 H 0.20 2.14 8.06 -2.91 -0.02 2.12 16 40 H 0.19 1.13 8.06 -2.91 -0.02 1.10 16 41 H 0.18 1.26 8.06 -2.91 -0.02 1.24 16 42 H 0.16 1.60 8.06 -2.91 -0.02 1.58 16 43 H 0.14 2.97 8.06 -2.91 -0.02 2.94 16 44 H 0.14 5.63 4.96 -3.00 -0.01 5.62 16 45 H 0.04 2.66 6.15 -2.39 -0.01 2.64 16 46 H -0.01 -0.32 8.14 -2.39 -0.02 -0.33 16 47 H 0.24 15.27 8.31 -92.71 -0.77 14.50 16 Total: -1.00 -80.86 375.47 1.92 -78.95 By element: Atomic # 1 Polarization: 25.87 SS G_CDS: 0.26 Total: 26.13 kcal Atomic # 6 Polarization: 2.53 SS G_CDS: 5.47 Total: 8.00 kcal Atomic # 7 Polarization: -130.15 SS G_CDS: -5.79 Total: -135.94 kcal Atomic # 8 Polarization: -27.31 SS G_CDS: -0.05 Total: -27.36 kcal Atomic # 14 Polarization: 48.19 SS G_CDS: 2.03 Total: 50.22 kcal Total: -80.86 1.92 -78.95 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071775642.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.824 kcal (2) G-P(sol) polarization free energy of solvation -80.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.948 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds