Wall clock time and date at job start Tue Mar 31 2020 23:57:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08999 * 109.59085 * 2 1 4 4 C 1.53193 * 109.58433 * 120.28086 * 2 1 3 5 5 C 1.53041 * 109.31300 * 174.56357 * 4 2 1 6 6 C 1.53037 * 109.53612 * 298.63310 * 5 4 2 7 7 H 1.08997 * 109.49816 * 301.41175 * 6 5 4 8 8 N 1.46498 * 109.49664 * 181.31298 * 6 5 4 9 9 C 1.34776 * 120.00096 * 155.00179 * 8 6 5 10 10 O 1.21562 * 120.00102 * 0.02562 * 9 8 6 11 11 C 1.47773 * 120.00439 * 180.02562 * 9 8 6 12 12 C 1.40636 * 119.79935 * 359.72843 * 11 9 8 13 13 C 1.35700 * 120.91655 * 179.73530 * 12 11 9 14 14 C 1.40754 * 120.11466 * 0.50691 * 13 12 11 15 15 N 1.33648 * 120.83031 * 179.76371 * 14 13 12 16 16 C 1.31122 * 121.39063 * 180.02562 * 15 14 13 17 17 C 1.39313 * 121.77240 * 0.02562 * 16 15 14 18 18 C 1.36584 * 119.90448 * 0.02562 * 17 16 15 19 19 C 1.40893 * 118.15622 * 359.97438 * 18 17 16 20 20 C 1.38544 * 119.80989 * 179.97438 * 11 9 8 21 21 C 1.53191 * 109.31090 * 61.36675 * 6 5 4 22 22 N 1.46917 * 109.70402 * 239.63746 * 2 1 3 23 23 C 1.36945 * 120.63269 * 6.51524 * 22 2 1 24 24 H 1.07999 * 119.99653 * 330.19743 * 23 22 2 25 25 C 1.38810 * 120.00178 * 150.19385 * 23 22 2 26 26 N 1.31620 * 119.99942 * 344.48884 * 25 23 22 27 27 Si 1.86795 * 119.99872 * 164.48482 * 25 23 22 28 28 H 1.48497 * 109.47152 * 60.00445 * 27 25 23 29 29 H 1.48507 * 109.47028 * 180.02562 * 27 25 23 30 30 H 1.48494 * 109.47373 * 300.00024 * 27 25 23 31 31 H 1.09003 * 109.46928 * 300.00752 * 1 2 3 32 32 H 1.08996 * 109.46860 * 60.00275 * 1 2 3 33 33 H 1.08996 * 109.46920 * 180.02562 * 1 2 3 34 34 H 1.09010 * 109.49786 * 294.51389 * 4 2 1 35 35 H 1.08997 * 109.49933 * 54.61186 * 4 2 1 36 36 H 1.09001 * 109.45644 * 58.65504 * 5 4 2 37 37 H 1.09001 * 109.46009 * 178.61472 * 5 4 2 38 38 H 0.97004 * 120.00428 * 335.00123 * 8 6 5 39 39 H 1.07994 * 119.54261 * 359.97438 * 12 11 9 40 40 H 1.08003 * 119.93927 * 180.27540 * 13 12 11 41 41 H 1.08007 * 119.11458 * 180.02562 * 16 15 14 42 42 H 1.08003 * 120.04752 * 179.97438 * 17 16 15 43 43 H 1.07997 * 120.91865 * 179.97438 * 18 17 16 44 44 H 1.08004 * 120.29328 * 359.97438 * 20 11 9 45 45 H 1.09006 * 109.59022 * 65.15461 * 21 6 5 46 46 H 1.09004 * 109.58412 * 185.43017 * 21 6 5 47 47 H 0.97005 * 119.99905 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8955 1.0269 0.0000 4 6 2.0436 -0.7278 1.2464 5 6 3.5678 -0.8434 1.1730 6 6 3.9603 -1.6610 -0.0597 7 1 3.5036 -2.6489 -0.0015 8 7 5.4180 -1.7976 -0.1120 9 6 5.9743 -2.8397 -0.7609 10 8 5.2665 -3.6659 -1.3034 11 6 7.4446 -2.9779 -0.8132 12 6 8.2596 -2.0166 -0.1892 13 6 9.6120 -2.1241 -0.2186 14 6 10.2203 -3.2022 -0.8885 15 7 11.5510 -3.3196 -0.9304 16 6 12.1292 -4.3190 -1.5517 17 6 11.3901 -5.3069 -2.1987 18 6 10.0255 -5.2479 -2.1960 19 6 9.4078 -4.1725 -1.5273 20 6 8.0121 -4.0509 -1.4810 21 6 3.4685 -0.9437 -1.3209 22 7 2.0254 -0.6991 -1.1934 23 6 1.1585 -1.1154 -2.1684 24 1 0.1447 -1.3842 -1.9107 25 6 1.5827 -1.1917 -3.4879 26 7 2.6925 -0.5888 -3.8583 27 14 0.5784 -2.1500 -4.7379 28 1 -0.7832 -1.5650 -4.8321 29 1 1.2412 -2.0786 -6.0649 30 1 0.4792 -3.5686 -4.3104 31 1 -0.3633 0.5140 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0276 0.0005 34 1 1.7638 -0.1653 2.1373 35 1 1.6049 -1.7245 1.2923 36 1 4.0045 0.1528 1.1022 37 1 3.9380 -1.3391 2.0704 38 1 5.9828 -1.1382 0.3205 39 1 7.8027 -1.1833 0.3238 40 1 10.2227 -1.3791 0.2698 41 1 13.2077 -4.3780 -1.5622 42 1 11.8953 -6.1178 -2.7023 43 1 9.4364 -6.0046 -2.6926 44 1 7.3848 -4.7864 -1.9628 45 1 3.9921 0.0062 -1.4287 46 1 3.6599 -1.5675 -2.1940 47 1 2.9888 -0.6418 -4.7805 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071788959.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:57:55 Heat of formation + Delta-G solvation = 39.217713 kcal Electronic energy + Delta-G solvation = -28916.670426 eV Core-core repulsion = 25064.603262 eV Total energy + Delta-G solvation = -3852.067164 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.06535 -39.56904 -37.78139 -36.67817 -34.51194 -33.70716 -32.81525 -31.43236 -30.30374 -30.13655 -29.75515 -26.24509 -25.21724 -24.41663 -24.03030 -22.38016 -22.21600 -21.11391 -20.30485 -19.36428 -18.30697 -17.83063 -17.10336 -16.39776 -15.97654 -15.55852 -15.10150 -14.73639 -14.65224 -14.21220 -14.20252 -14.00898 -13.79074 -13.63166 -13.57663 -13.35565 -13.29327 -12.77220 -12.40173 -12.23297 -11.87331 -11.78313 -11.63886 -11.42589 -11.11335 -10.88760 -10.82965 -10.68374 -10.52434 -10.40183 -10.26366 -9.96819 -9.81346 -9.76666 -9.45401 -9.44658 -9.03760 -8.59959 -8.42598 -8.39649 -6.59057 -5.72562 -3.17332 0.05604 0.46357 1.72689 2.35608 3.37476 3.44461 3.47417 3.49619 3.51648 3.97272 4.00457 4.36004 4.44491 4.54551 4.61611 4.72648 4.82024 4.92744 5.00799 5.23228 5.34513 5.37641 5.48194 5.52840 5.57308 5.65728 5.70863 5.72196 5.81754 5.96956 6.04021 6.10256 6.14230 6.25864 6.27850 6.31644 6.39725 6.45857 6.49733 6.53941 6.63305 6.74114 6.91588 7.05546 7.13592 7.32215 7.62658 7.74309 7.84942 7.89978 8.51180 8.57056 9.26154 9.90434 10.46003 11.35602 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014587 B = 0.002857 C = 0.002505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1918.997444 B = 9797.912216 C =11175.184469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.165 3.835 3 H 0.025 0.975 4 C -0.126 4.126 5 C -0.117 4.117 6 C 0.116 3.884 7 H 0.083 0.917 8 N -0.713 5.713 9 C 0.552 3.448 10 O -0.527 6.527 11 C -0.123 4.123 12 C -0.072 4.072 13 C -0.100 4.100 14 C 0.140 3.860 15 N -0.479 5.479 16 C 0.136 3.864 17 C -0.183 4.183 18 C -0.045 4.045 19 C -0.112 4.112 20 C -0.029 4.029 21 C 0.169 3.831 22 N -0.583 5.583 23 C -0.254 4.254 24 H 0.069 0.931 25 C 0.007 3.993 26 N -0.900 5.900 27 Si 0.901 3.099 28 H -0.283 1.283 29 H -0.291 1.291 30 H -0.283 1.283 31 H 0.038 0.962 32 H 0.061 0.939 33 H 0.053 0.947 34 H 0.055 0.945 35 H 0.061 0.939 36 H 0.059 0.941 37 H 0.051 0.949 38 H 0.392 0.608 39 H 0.134 0.866 40 H 0.140 0.860 41 H 0.159 0.841 42 H 0.139 0.861 43 H 0.142 0.858 44 H 0.146 0.854 45 H 0.017 0.983 46 H 0.093 0.907 47 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.032 -4.964 9.048 19.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.058 3.942 3 H 0.042 0.958 4 C -0.166 4.166 5 C -0.155 4.155 6 C 0.011 3.989 7 H 0.101 0.899 8 N -0.364 5.364 9 C 0.338 3.662 10 O -0.404 6.404 11 C -0.126 4.126 12 C -0.093 4.093 13 C -0.119 4.119 14 C 0.018 3.982 15 N -0.187 5.187 16 C -0.037 4.037 17 C -0.203 4.203 18 C -0.071 4.071 19 C -0.114 4.114 20 C -0.049 4.049 21 C 0.042 3.958 22 N -0.306 5.306 23 C -0.384 4.384 24 H 0.087 0.913 25 C -0.192 4.192 26 N -0.544 5.544 27 Si 0.730 3.270 28 H -0.209 1.209 29 H -0.217 1.217 30 H -0.209 1.209 31 H 0.057 0.943 32 H 0.080 0.920 33 H 0.072 0.928 34 H 0.073 0.927 35 H 0.079 0.921 36 H 0.078 0.922 37 H 0.070 0.930 38 H 0.226 0.774 39 H 0.152 0.848 40 H 0.158 0.842 41 H 0.177 0.823 42 H 0.156 0.844 43 H 0.160 0.840 44 H 0.164 0.836 45 H 0.035 0.965 46 H 0.111 0.889 47 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 15.953 -4.819 8.937 18.910 hybrid contribution -0.515 -0.763 -0.993 1.355 sum 15.438 -5.582 7.943 18.237 Atomic orbital electron populations 1.21796 0.95982 1.01397 1.00194 1.20488 0.93074 0.93558 0.87050 0.95762 1.22050 0.94234 1.01356 0.98950 1.21685 0.97482 0.99641 0.96669 1.22039 0.77378 1.01052 0.98413 0.89855 1.46007 1.08779 1.26323 1.55250 1.18091 0.86929 0.82001 0.79189 1.90823 1.62901 1.42056 1.44608 1.20132 0.93904 0.96972 1.01618 1.20995 0.93361 0.97748 0.97160 1.20650 0.94270 0.97274 0.99677 1.18990 0.89057 0.94324 0.95802 1.68062 1.10349 1.22761 1.17479 1.23013 1.00702 0.88872 0.91071 1.21889 0.94788 1.01279 1.02362 1.21600 0.95178 0.95809 0.94488 1.18822 0.94392 0.97102 1.01095 1.21482 0.92700 0.96479 0.94234 1.21060 0.83612 0.96890 0.94237 1.44000 1.02550 1.64727 1.19326 1.19080 0.95134 1.38161 0.85986 0.91306 1.25085 0.97810 0.99248 0.97057 1.69995 1.24089 1.43475 1.16804 0.86403 0.79426 0.80464 0.80669 1.20938 1.21694 1.20918 0.94348 0.91996 0.92803 0.92651 0.92054 0.92241 0.93032 0.77403 0.84795 0.84207 0.82338 0.84357 0.83983 0.83586 0.96475 0.88892 0.93689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.55 7.95 37.16 0.30 -2.25 16 2 C 0.16 3.36 3.49 -67.60 -0.24 3.12 16 3 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 4 C -0.13 -2.12 5.37 -26.61 -0.14 -2.26 16 5 C -0.12 -1.85 5.35 -26.69 -0.14 -1.99 16 6 C 0.12 2.23 2.60 -67.81 -0.18 2.06 16 7 H 0.08 1.83 7.58 -51.93 -0.39 1.43 16 8 N -0.71 -11.54 5.03 -54.66 -0.27 -11.82 16 9 C 0.55 9.77 7.73 -12.36 -0.10 9.67 16 10 O -0.53 -11.63 15.97 5.31 0.08 -11.55 16 11 C -0.12 -1.75 5.87 -104.98 -0.62 -2.37 16 12 C -0.07 -0.83 9.44 -39.59 -0.37 -1.20 16 13 C -0.10 -1.12 9.95 -39.54 -0.39 -1.52 16 14 C 0.14 1.73 6.61 -84.78 -0.56 1.17 16 15 N -0.48 -5.59 10.33 -10.92 -0.11 -5.71 16 16 C 0.14 1.19 11.15 -17.46 -0.19 0.99 16 17 C -0.18 -1.42 10.03 -39.78 -0.40 -1.82 16 18 C -0.04 -0.42 9.89 -39.17 -0.39 -0.81 16 19 C -0.11 -1.36 5.74 -106.82 -0.61 -1.97 16 20 C -0.03 -0.39 9.35 -38.74 -0.36 -0.76 16 21 C 0.17 4.07 4.86 -3.71 -0.02 4.05 16 22 N -0.58 -14.46 2.99 -164.77 -0.49 -14.95 16 23 C -0.25 -6.95 8.58 -15.06 -0.13 -7.08 16 24 H 0.07 1.83 6.25 -52.49 -0.33 1.50 16 25 C 0.01 0.20 4.94 -17.43 -0.09 0.12 16 26 N -0.90 -26.71 11.23 55.49 0.62 -26.08 16 27 Si 0.90 22.43 29.58 -169.99 -5.03 17.40 16 28 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 29 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 30 H -0.28 -7.07 7.11 56.52 0.40 -6.67 16 31 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 32 H 0.06 1.25 7.66 -51.93 -0.40 0.86 16 33 H 0.05 1.02 7.42 -51.93 -0.39 0.64 16 34 H 0.05 0.79 8.14 -51.92 -0.42 0.36 16 35 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 36 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 38 H 0.39 4.91 6.59 -40.82 -0.27 4.64 16 39 H 0.13 1.18 6.35 -52.49 -0.33 0.85 16 40 H 0.14 1.29 8.06 -52.48 -0.42 0.86 16 41 H 0.16 0.84 8.06 -52.48 -0.42 0.42 16 42 H 0.14 0.64 8.06 -52.48 -0.42 0.22 16 43 H 0.14 1.02 8.06 -52.49 -0.42 0.60 16 44 H 0.15 1.96 7.62 -52.48 -0.40 1.56 16 45 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 46 H 0.09 2.65 6.15 -51.93 -0.32 2.33 16 47 H 0.25 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 378.49 15.07 5.70 5.70 Total: -1.00 -34.19 378.49 -10.74 -44.93 By element: Atomic # 1 Polarization: 11.53 SS G_CDS: -6.61 Total: 4.92 kcal Atomic # 6 Polarization: 1.79 SS G_CDS: -4.63 Total: -2.84 kcal Atomic # 7 Polarization: -58.30 SS G_CDS: -0.26 Total: -58.56 kcal Atomic # 8 Polarization: -11.63 SS G_CDS: 0.08 Total: -11.55 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -5.03 Total: 17.40 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -34.19 -10.74 -44.93 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071788959.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.144 kcal (2) G-P(sol) polarization free energy of solvation -34.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.926 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds