Wall clock time and date at job start Tue Mar 31 2020 23:57:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08999 * 109.59085 * 2 1 4 4 C 1.53193 * 109.58433 * 120.28086 * 2 1 3 5 5 C 1.53041 * 109.31300 * 174.56357 * 4 2 1 6 6 C 1.53037 * 109.53612 * 298.63310 * 5 4 2 7 7 H 1.08997 * 109.49816 * 301.41175 * 6 5 4 8 8 N 1.46498 * 109.49664 * 181.31298 * 6 5 4 9 9 C 1.34776 * 120.00096 * 155.00179 * 8 6 5 10 10 O 1.21562 * 120.00102 * 0.02562 * 9 8 6 11 11 C 1.47773 * 120.00439 * 180.02562 * 9 8 6 12 12 C 1.40636 * 119.79935 * 359.72843 * 11 9 8 13 13 C 1.35700 * 120.91655 * 179.73530 * 12 11 9 14 14 C 1.40754 * 120.11466 * 0.50691 * 13 12 11 15 15 N 1.33648 * 120.83031 * 179.76371 * 14 13 12 16 16 C 1.31122 * 121.39063 * 180.02562 * 15 14 13 17 17 C 1.39313 * 121.77240 * 0.02562 * 16 15 14 18 18 C 1.36584 * 119.90448 * 0.02562 * 17 16 15 19 19 C 1.40893 * 118.15622 * 359.97438 * 18 17 16 20 20 C 1.38544 * 119.80989 * 179.97438 * 11 9 8 21 21 C 1.53191 * 109.31090 * 61.36675 * 6 5 4 22 22 N 1.46917 * 109.70402 * 239.63746 * 2 1 3 23 23 C 1.36945 * 120.63269 * 6.51524 * 22 2 1 24 24 H 1.07999 * 119.99653 * 330.19743 * 23 22 2 25 25 C 1.38810 * 120.00178 * 150.19385 * 23 22 2 26 26 N 1.31620 * 119.99942 * 344.48884 * 25 23 22 27 27 Si 1.86795 * 119.99872 * 164.48482 * 25 23 22 28 28 H 1.48497 * 109.47152 * 60.00445 * 27 25 23 29 29 H 1.48507 * 109.47028 * 180.02562 * 27 25 23 30 30 H 1.48494 * 109.47373 * 300.00024 * 27 25 23 31 31 H 1.09003 * 109.46928 * 300.00752 * 1 2 3 32 32 H 1.08996 * 109.46860 * 60.00275 * 1 2 3 33 33 H 1.08996 * 109.46920 * 180.02562 * 1 2 3 34 34 H 1.09010 * 109.49786 * 294.51389 * 4 2 1 35 35 H 1.08997 * 109.49933 * 54.61186 * 4 2 1 36 36 H 1.09001 * 109.45644 * 58.65504 * 5 4 2 37 37 H 1.09001 * 109.46009 * 178.61472 * 5 4 2 38 38 H 0.97004 * 120.00428 * 335.00123 * 8 6 5 39 39 H 1.07994 * 119.54261 * 359.97438 * 12 11 9 40 40 H 1.08003 * 119.93927 * 180.27540 * 13 12 11 41 41 H 1.08007 * 119.11458 * 180.02562 * 16 15 14 42 42 H 1.08003 * 120.04752 * 179.97438 * 17 16 15 43 43 H 1.07997 * 120.91865 * 179.97438 * 18 17 16 44 44 H 1.08004 * 120.29328 * 359.97438 * 20 11 9 45 45 H 1.09006 * 109.59022 * 65.15461 * 21 6 5 46 46 H 1.09004 * 109.58412 * 185.43017 * 21 6 5 47 47 H 0.97005 * 119.99905 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8955 1.0269 0.0000 4 6 2.0436 -0.7278 1.2464 5 6 3.5678 -0.8434 1.1730 6 6 3.9603 -1.6610 -0.0597 7 1 3.5036 -2.6489 -0.0015 8 7 5.4180 -1.7976 -0.1120 9 6 5.9743 -2.8397 -0.7609 10 8 5.2665 -3.6659 -1.3034 11 6 7.4446 -2.9779 -0.8132 12 6 8.2596 -2.0166 -0.1892 13 6 9.6120 -2.1241 -0.2186 14 6 10.2203 -3.2022 -0.8885 15 7 11.5510 -3.3196 -0.9304 16 6 12.1292 -4.3190 -1.5517 17 6 11.3901 -5.3069 -2.1987 18 6 10.0255 -5.2479 -2.1960 19 6 9.4078 -4.1725 -1.5273 20 6 8.0121 -4.0509 -1.4810 21 6 3.4685 -0.9437 -1.3209 22 7 2.0254 -0.6991 -1.1934 23 6 1.1585 -1.1154 -2.1684 24 1 0.1447 -1.3842 -1.9107 25 6 1.5827 -1.1917 -3.4879 26 7 2.6925 -0.5888 -3.8583 27 14 0.5784 -2.1500 -4.7379 28 1 -0.7832 -1.5650 -4.8321 29 1 1.2412 -2.0786 -6.0649 30 1 0.4792 -3.5686 -4.3104 31 1 -0.3633 0.5140 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0276 0.0005 34 1 1.7638 -0.1653 2.1373 35 1 1.6049 -1.7245 1.2923 36 1 4.0045 0.1528 1.1022 37 1 3.9380 -1.3391 2.0704 38 1 5.9828 -1.1382 0.3205 39 1 7.8027 -1.1833 0.3238 40 1 10.2227 -1.3791 0.2698 41 1 13.2077 -4.3780 -1.5622 42 1 11.8953 -6.1178 -2.7023 43 1 9.4364 -6.0046 -2.6926 44 1 7.3848 -4.7864 -1.9628 45 1 3.9921 0.0062 -1.4287 46 1 3.6599 -1.5675 -2.1940 47 1 2.9888 -0.6418 -4.7805 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071788959.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:57:54 Heat of formation + Delta-G solvation = 17.073070 kcal Electronic energy + Delta-G solvation = -28917.630690 eV Core-core repulsion = 25064.603262 eV Total energy + Delta-G solvation = -3853.027428 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.96421 -40.91357 -39.32291 -37.70914 -36.09913 -34.69388 -34.50287 -32.70328 -31.80332 -31.25105 -31.07291 -27.83127 -26.94861 -25.56631 -24.87700 -24.01307 -23.21633 -22.43300 -21.79176 -21.01245 -19.37674 -18.83589 -18.35287 -17.93908 -17.27296 -16.88045 -16.65932 -16.07217 -15.75332 -15.54789 -15.48011 -15.29237 -15.10788 -14.97133 -14.95040 -14.47167 -14.44850 -14.11746 -14.01729 -13.50717 -13.13398 -13.07397 -12.81322 -12.72824 -12.66412 -12.57642 -12.47998 -12.29588 -12.13877 -11.99156 -11.66728 -11.62584 -11.44232 -11.15350 -10.98285 -10.54611 -10.53845 -10.17664 -9.84074 -9.36267 -8.61724 -7.85781 -5.32086 -0.83188 -0.36556 0.84594 1.39121 1.40728 1.45531 1.49573 2.07474 2.30629 2.50211 3.06268 3.24897 3.30654 3.52684 3.55426 3.70198 3.76084 3.92312 3.97610 3.98842 4.02803 4.09565 4.25604 4.28334 4.39257 4.49419 4.60450 4.71428 4.74591 4.80278 4.85668 4.89126 4.93998 5.00342 5.01297 5.07236 5.16484 5.18819 5.24241 5.30437 5.33383 5.42589 5.48877 5.55122 5.61059 5.70225 5.73415 5.79220 6.40591 6.55449 6.85403 7.14889 7.23006 7.89846 8.39292 9.19222 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014587 B = 0.002857 C = 0.002505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1918.997444 B = 9797.912216 C =11175.184469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.153 3.847 3 H 0.022 0.978 4 C -0.118 4.118 5 C -0.108 4.108 6 C 0.131 3.869 7 H 0.052 0.948 8 N -0.700 5.700 9 C 0.549 3.451 10 O -0.583 6.583 11 C -0.143 4.143 12 C -0.071 4.071 13 C -0.099 4.099 14 C 0.124 3.876 15 N -0.504 5.504 16 C 0.140 3.860 17 C -0.169 4.169 18 C -0.058 4.058 19 C -0.129 4.129 20 C -0.036 4.036 21 C 0.181 3.819 22 N -0.603 5.603 23 C -0.251 4.251 24 H 0.074 0.926 25 C -0.053 4.053 26 N -0.933 5.933 27 Si 0.957 3.043 28 H -0.268 1.268 29 H -0.297 1.297 30 H -0.286 1.286 31 H 0.079 0.921 32 H 0.037 0.963 33 H 0.045 0.955 34 H 0.097 0.903 35 H 0.052 0.948 36 H 0.075 0.925 37 H 0.087 0.913 38 H 0.412 0.588 39 H 0.160 0.840 40 H 0.162 0.838 41 H 0.197 0.803 42 H 0.178 0.822 43 H 0.159 0.841 44 H 0.134 0.866 45 H -0.001 1.001 46 H 0.040 0.960 47 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.883 -4.960 11.291 21.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.048 3.952 3 H 0.040 0.960 4 C -0.157 4.157 5 C -0.146 4.146 6 C 0.025 3.975 7 H 0.071 0.929 8 N -0.352 5.352 9 C 0.337 3.663 10 O -0.464 6.464 11 C -0.146 4.146 12 C -0.091 4.091 13 C -0.117 4.117 14 C 0.003 3.997 15 N -0.212 5.212 16 C -0.032 4.032 17 C -0.188 4.188 18 C -0.084 4.084 19 C -0.131 4.131 20 C -0.056 4.056 21 C 0.054 3.946 22 N -0.327 5.327 23 C -0.382 4.382 24 H 0.092 0.908 25 C -0.249 4.249 26 N -0.579 5.579 27 Si 0.785 3.215 28 H -0.193 1.193 29 H -0.223 1.223 30 H -0.212 1.212 31 H 0.098 0.902 32 H 0.056 0.944 33 H 0.064 0.936 34 H 0.115 0.885 35 H 0.070 0.930 36 H 0.094 0.906 37 H 0.105 0.895 38 H 0.251 0.749 39 H 0.177 0.823 40 H 0.179 0.821 41 H 0.214 0.786 42 H 0.195 0.805 43 H 0.177 0.823 44 H 0.152 0.848 45 H 0.017 0.983 46 H 0.058 0.942 47 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 17.809 -4.779 11.238 21.594 hybrid contribution -0.934 -0.826 -1.698 2.106 sum 16.875 -5.605 9.540 20.179 Atomic orbital electron populations 1.21730 0.94764 1.01129 1.01050 1.20816 0.94286 0.93417 0.86720 0.95988 1.21956 0.94531 1.00896 0.98341 1.21663 0.97146 1.00043 0.95740 1.21569 0.78784 0.99294 0.97874 0.92947 1.45799 1.07881 1.26564 1.54912 1.18696 0.88383 0.81306 0.77900 1.90783 1.64547 1.44121 1.46971 1.19929 0.91747 0.98857 1.04111 1.21121 0.93367 0.97641 0.96970 1.20915 0.94199 0.97389 0.99182 1.19284 0.89773 0.94676 0.95997 1.68137 1.09732 1.24337 1.19013 1.23776 1.02592 0.87738 0.89095 1.22329 0.93959 1.01617 1.00923 1.21927 0.96437 0.95542 0.94459 1.18970 0.93569 0.98447 1.02152 1.21513 0.93666 0.96208 0.94207 1.20739 0.83835 0.95256 0.94810 1.44300 1.02444 1.65645 1.20290 1.19430 0.95601 1.36541 0.86613 0.90836 1.25814 0.99138 1.00881 0.99030 1.70159 1.25885 1.45541 1.16361 0.85496 0.78749 0.78971 0.78261 1.19294 1.22333 1.21233 0.90215 0.94397 0.93571 0.88472 0.92951 0.90620 0.89484 0.74943 0.82286 0.82055 0.78643 0.80465 0.82334 0.84802 0.98332 0.94192 0.94703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.66 7.95 71.98 0.57 -4.09 16 2 C 0.15 6.07 3.49 44.98 0.16 6.23 16 3 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 4 C -0.12 -3.64 5.37 30.67 0.16 -3.47 16 5 C -0.11 -3.15 5.35 30.62 0.16 -2.99 16 6 C 0.13 5.13 2.60 45.07 0.12 5.24 16 7 H 0.05 2.40 7.58 -2.39 -0.02 2.38 16 8 N -0.70 -23.06 5.03 -445.12 -2.24 -25.29 16 9 C 0.55 20.55 7.73 86.77 0.67 21.22 16 10 O -0.58 -27.92 15.97 -3.91 -0.06 -27.98 16 11 C -0.14 -4.25 5.87 -20.10 -0.12 -4.37 16 12 C -0.07 -1.58 9.44 22.27 0.21 -1.37 16 13 C -0.10 -2.10 9.95 22.30 0.22 -1.87 16 14 C 0.12 2.96 6.61 40.35 0.27 3.22 16 15 N -0.50 -10.75 10.33 -188.45 -1.95 -12.70 16 16 C 0.14 2.00 11.15 85.06 0.95 2.94 16 17 C -0.17 -2.09 10.03 22.14 0.22 -1.87 16 18 C -0.06 -1.02 9.89 22.53 0.22 -0.80 16 19 C -0.13 -3.13 5.74 -21.29 -0.12 -3.25 16 20 C -0.04 -1.03 9.35 22.81 0.21 -0.82 16 21 C 0.18 9.14 4.86 86.36 0.42 9.56 16 22 N -0.60 -30.75 2.99 -675.22 -2.02 -32.76 16 23 C -0.25 -14.22 8.58 84.03 0.72 -13.50 16 24 H 0.07 4.00 6.25 -2.91 -0.02 3.98 16 25 C -0.05 -3.16 4.94 84.86 0.42 -2.74 16 26 N -0.93 -58.56 11.23 21.65 0.24 -58.32 16 27 Si 0.96 47.99 29.58 68.60 2.03 50.02 16 28 H -0.27 -12.61 7.11 99.48 0.71 -11.90 16 29 H -0.30 -15.04 7.11 99.48 0.71 -14.33 16 30 H -0.29 -14.30 7.11 99.48 0.71 -13.59 16 31 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 32 H 0.04 1.51 7.66 -2.39 -0.02 1.50 16 33 H 0.05 1.71 7.42 -2.39 -0.02 1.69 16 34 H 0.10 2.26 8.14 -2.38 -0.02 2.24 16 35 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 36 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 37 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 38 H 0.41 9.91 6.59 -92.71 -0.61 9.30 16 39 H 0.16 2.53 6.35 -2.91 -0.02 2.51 16 40 H 0.16 2.64 8.06 -2.91 -0.02 2.61 16 41 H 0.20 1.20 8.06 -2.91 -0.02 1.18 16 42 H 0.18 0.79 8.06 -2.91 -0.02 0.77 16 43 H 0.16 2.13 8.06 -2.91 -0.02 2.11 16 44 H 0.13 4.00 7.62 -2.91 -0.02 3.98 16 45 H 0.00 -0.07 8.14 -2.38 -0.02 -0.09 16 46 H 0.04 2.44 6.15 -2.38 -0.01 2.43 16 47 H 0.24 15.08 8.31 -92.70 -0.77 14.31 16 Total: -1.00 -81.77 378.49 1.86 -79.91 By element: Atomic # 1 Polarization: 19.46 SS G_CDS: 0.38 Total: 19.84 kcal Atomic # 6 Polarization: 1.82 SS G_CDS: 5.47 Total: 7.29 kcal Atomic # 7 Polarization: -123.12 SS G_CDS: -5.96 Total: -129.07 kcal Atomic # 8 Polarization: -27.92 SS G_CDS: -0.06 Total: -27.98 kcal Atomic # 14 Polarization: 47.99 SS G_CDS: 2.03 Total: 50.02 kcal Total: -81.77 1.86 -79.91 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071788959.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.982 kcal (2) G-P(sol) polarization free energy of solvation -81.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.909 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds