Wall clock time and date at job start Tue Mar 31 2020 23:57:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09005 * 109.70479 * 2 1 4 4 C 1.53203 * 109.58219 * 239.65183 * 2 1 3 5 5 C 1.53042 * 109.30744 * 185.57819 * 4 2 1 6 6 C 1.53353 * 109.60813 * 61.37521 * 5 4 2 7 7 H 1.09001 * 109.68308 * 178.74481 * 6 5 4 8 8 N 1.46499 * 109.47387 * 58.54646 * 6 5 4 9 9 C 1.34778 * 119.99375 * 155.37462 * 8 6 5 10 10 O 1.21557 * 120.00635 * 0.02562 * 9 8 6 11 11 C 1.47768 * 119.99399 * 180.02562 * 9 8 6 12 12 C 1.40634 * 119.80604 * 359.72513 * 11 9 8 13 13 C 1.35706 * 120.91827 * 179.72801 * 12 11 9 14 14 C 1.40748 * 120.11206 * 0.52754 * 13 12 11 15 15 N 1.33658 * 120.82921 * 179.77832 * 14 13 12 16 16 C 1.31120 * 121.39339 * 179.97438 * 15 14 13 17 17 C 1.39316 * 121.77060 * 0.02562 * 16 15 14 18 18 C 1.36578 * 119.90648 * 359.97438 * 17 16 15 19 19 C 1.40896 * 118.15798 * 0.02562 * 18 17 16 20 20 C 1.38550 * 119.80260 * 180.02562 * 11 9 8 21 21 C 1.53188 * 109.14868 * 298.70515 * 6 5 4 22 22 N 1.46920 * 109.58765 * 120.36206 * 2 1 3 23 23 C 1.36935 * 120.63248 * 353.37385 * 22 2 1 24 24 H 1.08001 * 119.99701 * 41.20329 * 23 22 2 25 25 C 1.38812 * 120.00277 * 221.20361 * 23 22 2 26 26 N 1.31614 * 120.00488 * 214.88125 * 25 23 22 27 27 Si 1.86805 * 119.99561 * 34.88046 * 25 23 22 28 28 H 1.48498 * 109.47182 * 84.62620 * 27 25 23 29 29 H 1.48501 * 109.46955 * 204.62654 * 27 25 23 30 30 H 1.48504 * 109.47350 * 324.62550 * 27 25 23 31 31 H 1.08998 * 109.46549 * 299.64103 * 1 2 3 32 32 H 1.08998 * 109.47036 * 59.63634 * 1 2 3 33 33 H 1.09002 * 109.47062 * 179.63902 * 1 2 3 34 34 H 1.08997 * 109.49741 * 305.52678 * 4 2 1 35 35 H 1.08993 * 109.49717 * 65.59702 * 4 2 1 36 36 H 1.08997 * 109.45815 * 181.38587 * 5 4 2 37 37 H 1.09000 * 109.46289 * 301.35199 * 5 4 2 38 38 H 0.96991 * 119.99906 * 335.37876 * 8 6 5 39 39 H 1.07998 * 119.53695 * 0.02562 * 12 11 9 40 40 H 1.08003 * 119.93857 * 180.28383 * 13 12 11 41 41 H 1.07996 * 119.11112 * 180.02562 * 16 15 14 42 42 H 1.07994 * 120.04587 * 179.97438 * 17 16 15 43 43 H 1.07994 * 120.92409 * 179.97438 * 18 17 16 44 44 H 1.08000 * 120.30153 * 359.97438 * 20 11 9 45 45 H 1.09000 * 109.59155 * 294.72762 * 21 6 5 46 46 H 1.08997 * 109.59019 * 174.43416 * 21 6 5 47 47 H 0.96994 * 120.00459 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0435 -0.7293 -1.2456 5 6 3.5674 -0.8479 -1.1703 6 6 3.9594 -1.6675 0.0651 7 1 5.0436 -1.7716 0.1078 8 7 3.3428 -2.9941 -0.0131 9 6 3.8960 -4.0338 0.6423 10 8 4.9061 -3.8708 1.2986 11 6 3.2744 -5.3720 0.5630 12 6 2.1025 -5.5548 -0.1927 13 6 1.5158 -6.7750 -0.2855 14 6 2.0717 -7.8788 0.3880 15 7 1.5033 -9.0860 0.3101 16 6 2.0119 -10.1219 0.9326 17 6 3.1666 -10.0191 1.7052 18 6 3.7989 -8.8147 1.8280 19 6 3.2493 -7.7039 1.1577 20 6 3.8460 -6.4380 1.2387 21 6 3.4651 -0.9472 1.3235 22 7 2.0226 -0.6996 1.1943 23 6 1.1538 -1.1129 2.1688 24 1 0.2057 -1.5523 1.8960 25 6 1.4917 -0.9671 3.5073 26 7 1.1108 -1.8714 4.3845 27 14 2.4871 0.5126 4.0633 28 1 1.5754 1.6590 4.3075 29 1 3.2105 0.1797 5.3168 30 1 3.4667 0.8752 3.0078 31 1 -0.3632 0.5083 0.8932 32 1 -0.3633 0.5195 -0.8867 33 1 -0.3633 -1.0277 -0.0065 34 1 1.6029 -1.7252 -1.2916 35 1 1.7655 -0.1669 -2.1369 36 1 3.9377 -1.3446 -2.0671 37 1 4.0061 0.1474 -1.0993 38 1 2.5367 -3.1241 -0.5364 39 1 1.6661 -4.7134 -0.7103 40 1 0.6187 -6.8984 -0.8740 41 1 1.5226 -11.0805 0.8439 42 1 3.5613 -10.8905 2.2063 43 1 4.6947 -8.7162 2.4230 44 1 4.7435 -6.2951 1.8223 45 1 3.9903 0.0018 1.4315 46 1 3.6521 -1.5699 2.1983 47 1 1.3472 -1.7697 5.3197 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071788960.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:57:59 Heat of formation + Delta-G solvation = 43.646561 kcal Electronic energy + Delta-G solvation = -29769.499523 eV Core-core repulsion = 25917.624409 eV Total energy + Delta-G solvation = -3851.875114 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.91138 -39.63766 -37.91065 -36.53863 -34.28859 -33.55753 -32.70670 -31.42074 -30.70676 -30.15230 -29.93735 -26.47767 -25.08505 -24.51845 -23.88510 -22.47758 -22.18665 -21.20494 -20.45207 -19.00295 -18.35950 -17.78944 -16.96958 -16.38874 -15.96737 -15.35253 -15.21634 -14.61593 -14.54974 -14.40702 -14.19002 -14.03809 -13.81026 -13.59990 -13.42329 -13.35653 -13.15184 -12.95994 -12.54703 -12.22540 -12.06082 -11.78301 -11.58126 -11.51496 -11.34015 -11.21810 -10.93858 -10.67184 -10.62573 -10.47184 -10.26775 -9.93464 -9.82289 -9.62664 -9.55962 -9.44155 -8.87553 -8.59595 -8.31845 -8.22120 -6.66972 -6.05443 -3.35669 0.21772 0.63464 1.88967 2.51542 3.42910 3.47098 3.53720 3.57968 3.65114 4.12844 4.17429 4.51296 4.59744 4.60841 4.75810 4.87638 4.91045 4.99102 5.10276 5.13245 5.21050 5.31151 5.33102 5.38645 5.44908 5.68610 5.81875 5.82515 5.87773 5.96941 5.98133 6.03137 6.15855 6.21766 6.27249 6.29516 6.32860 6.35672 6.41541 6.47044 6.51416 6.57139 6.71262 6.92447 6.99950 7.05625 7.09907 7.78358 7.95896 8.05991 8.43876 8.64765 9.02056 9.75187 10.23340 11.09784 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.013212 B = 0.003535 C = 0.003297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2118.740594 B = 7919.376103 C = 8490.619094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.162 3.838 3 H 0.026 0.974 4 C -0.130 4.130 5 C -0.119 4.119 6 C 0.126 3.874 7 H 0.080 0.920 8 N -0.693 5.693 9 C 0.560 3.440 10 O -0.545 6.545 11 C -0.118 4.118 12 C -0.066 4.066 13 C -0.100 4.100 14 C 0.141 3.859 15 N -0.478 5.478 16 C 0.134 3.866 17 C -0.185 4.185 18 C -0.045 4.045 19 C -0.111 4.111 20 C -0.030 4.030 21 C 0.133 3.867 22 N -0.590 5.590 23 C -0.274 4.274 24 H 0.075 0.925 25 C 0.053 3.947 26 N -0.877 5.877 27 Si 0.842 3.158 28 H -0.289 1.289 29 H -0.298 1.298 30 H -0.261 1.261 31 H 0.063 0.937 32 H 0.037 0.963 33 H 0.054 0.946 34 H 0.057 0.943 35 H 0.056 0.944 36 H 0.056 0.944 37 H 0.072 0.928 38 H 0.397 0.603 39 H 0.133 0.867 40 H 0.140 0.860 41 H 0.158 0.842 42 H 0.137 0.863 43 H 0.141 0.859 44 H 0.145 0.855 45 H 0.032 0.968 46 H 0.073 0.927 47 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.928 -11.062 -11.600 16.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.056 3.944 3 H 0.044 0.956 4 C -0.170 4.170 5 C -0.157 4.157 6 C 0.020 3.980 7 H 0.098 0.902 8 N -0.343 5.343 9 C 0.347 3.653 10 O -0.425 6.425 11 C -0.121 4.121 12 C -0.086 4.086 13 C -0.119 4.119 14 C 0.020 3.980 15 N -0.186 5.186 16 C -0.038 4.038 17 C -0.205 4.205 18 C -0.071 4.071 19 C -0.113 4.113 20 C -0.050 4.050 21 C 0.006 3.994 22 N -0.314 5.314 23 C -0.402 4.402 24 H 0.092 0.908 25 C -0.150 4.150 26 N -0.515 5.515 27 Si 0.669 3.331 28 H -0.217 1.217 29 H -0.225 1.225 30 H -0.186 1.186 31 H 0.082 0.918 32 H 0.056 0.944 33 H 0.073 0.927 34 H 0.075 0.925 35 H 0.075 0.925 36 H 0.075 0.925 37 H 0.090 0.910 38 H 0.234 0.766 39 H 0.151 0.849 40 H 0.157 0.843 41 H 0.176 0.824 42 H 0.155 0.845 43 H 0.159 0.841 44 H 0.162 0.838 45 H 0.050 0.950 46 H 0.091 0.909 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 3.832 -10.953 -11.496 16.334 hybrid contribution 0.802 0.919 0.973 1.561 sum 4.634 -10.033 -10.522 15.259 Atomic orbital electron populations 1.21751 0.95418 1.01636 1.00231 1.20598 0.93537 0.93378 0.86915 0.95594 1.22048 0.94905 1.00906 0.99115 1.21748 0.97196 1.00086 0.96685 1.21637 0.97083 0.81858 0.97472 0.90174 1.45721 1.29600 1.08336 1.50690 1.18009 0.83917 0.84024 0.79347 1.90734 1.25531 1.85072 1.41118 1.20046 0.96999 0.94327 1.00695 1.20970 0.93735 0.97383 0.96518 1.20632 1.00554 0.90632 1.00069 1.18973 0.91707 0.92124 0.95213 1.68054 1.31264 0.98805 1.20470 1.22983 0.92396 0.97311 0.91146 1.21856 0.97949 0.98788 1.01880 1.21566 0.98620 0.91685 0.95232 1.18799 0.97235 0.94858 1.00454 1.21422 0.98588 0.89925 0.95061 1.21706 0.85381 0.96672 0.95632 1.44303 1.02013 1.65107 1.20024 1.18481 1.02118 1.35354 0.84236 0.90776 1.25571 0.96606 0.96795 0.96012 1.70077 1.46937 1.31220 1.03272 0.87387 0.80695 0.86899 0.78154 1.21658 1.22483 1.18630 0.91840 0.94422 0.92673 0.92468 0.92486 0.92521 0.90982 0.76650 0.84941 0.84268 0.82444 0.84483 0.84120 0.83779 0.95043 0.90883 0.92802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.32 8.07 37.16 0.30 -2.02 16 2 C 0.16 2.94 3.50 -67.60 -0.24 2.71 16 3 H 0.03 0.49 8.14 -51.93 -0.42 0.06 16 4 C -0.13 -1.89 5.21 -26.60 -0.14 -2.03 16 5 C -0.12 -1.67 5.59 -26.53 -0.15 -1.82 16 6 C 0.13 2.18 2.83 -67.65 -0.19 1.99 16 7 H 0.08 1.40 7.58 -51.93 -0.39 1.01 16 8 N -0.69 -11.77 4.87 -54.50 -0.27 -12.04 16 9 C 0.56 10.41 7.73 -12.36 -0.10 10.31 16 10 O -0.55 -11.75 15.97 5.32 0.08 -11.67 16 11 C -0.12 -1.90 5.87 -104.98 -0.62 -2.52 16 12 C -0.07 -0.92 9.44 -39.58 -0.37 -1.29 16 13 C -0.10 -1.36 9.95 -39.54 -0.39 -1.75 16 14 C 0.14 2.03 6.61 -84.78 -0.56 1.47 16 15 N -0.48 -6.42 10.33 -10.92 -0.11 -6.53 16 16 C 0.13 1.37 11.15 -17.45 -0.19 1.18 16 17 C -0.18 -1.69 10.03 -39.78 -0.40 -2.09 16 18 C -0.05 -0.49 9.89 -39.18 -0.39 -0.88 16 19 C -0.11 -1.54 5.74 -106.81 -0.61 -2.16 16 20 C -0.03 -0.46 9.35 -38.74 -0.36 -0.82 16 21 C 0.13 2.86 4.19 -3.71 -0.02 2.85 16 22 N -0.59 -13.07 2.39 -164.77 -0.39 -13.47 16 23 C -0.27 -7.21 8.42 -15.06 -0.13 -7.34 16 24 H 0.07 2.09 6.83 -52.49 -0.36 1.73 16 25 C 0.05 1.50 4.82 -17.43 -0.08 1.42 16 26 N -0.88 -26.41 13.97 55.49 0.78 -25.64 16 27 Si 0.84 21.64 27.39 -169.99 -4.66 16.98 16 28 H -0.29 -7.52 7.11 56.52 0.40 -7.11 16 29 H -0.30 -7.88 7.11 56.52 0.40 -7.48 16 30 H -0.26 -6.44 5.24 56.52 0.30 -6.15 16 31 H 0.06 1.24 7.68 -51.93 -0.40 0.84 16 32 H 0.04 0.54 8.14 -51.93 -0.42 0.11 16 33 H 0.05 0.99 7.42 -51.93 -0.39 0.61 16 34 H 0.06 0.82 6.41 -51.93 -0.33 0.49 16 35 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 36 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 37 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 38 H 0.40 6.01 4.77 -40.82 -0.19 5.81 16 39 H 0.13 1.60 6.35 -52.49 -0.33 1.27 16 40 H 0.14 1.61 8.06 -52.48 -0.42 1.19 16 41 H 0.16 1.06 8.06 -52.49 -0.42 0.63 16 42 H 0.14 0.80 8.06 -52.49 -0.42 0.37 16 43 H 0.14 1.18 8.06 -52.49 -0.42 0.75 16 44 H 0.14 2.10 7.62 -52.49 -0.40 1.70 16 45 H 0.03 0.69 6.71 -51.93 -0.35 0.34 16 46 H 0.07 1.86 7.01 -51.93 -0.36 1.49 16 47 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 LS Contribution 372.37 15.07 5.61 5.61 Total: -1.00 -33.35 372.37 -10.15 -43.49 By element: Atomic # 1 Polarization: 12.60 SS G_CDS: -6.55 Total: 6.04 kcal Atomic # 6 Polarization: 1.85 SS G_CDS: -4.64 Total: -2.79 kcal Atomic # 7 Polarization: -57.68 SS G_CDS: 0.00 Total: -57.68 kcal Atomic # 8 Polarization: -11.75 SS G_CDS: 0.08 Total: -11.67 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -4.66 Total: 16.98 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -33.35 -10.15 -43.49 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071788960.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.140 kcal (2) G-P(sol) polarization free energy of solvation -33.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.494 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds