Wall clock time and date at job start Tue Mar 31 2020 23:57:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09005 * 109.70479 * 2 1 4 4 C 1.53203 * 109.58219 * 239.65183 * 2 1 3 5 5 C 1.53042 * 109.30744 * 185.57819 * 4 2 1 6 6 C 1.53353 * 109.60813 * 61.37521 * 5 4 2 7 7 H 1.09001 * 109.68308 * 178.74481 * 6 5 4 8 8 N 1.46499 * 109.47387 * 58.54646 * 6 5 4 9 9 C 1.34778 * 119.99375 * 155.37462 * 8 6 5 10 10 O 1.21557 * 120.00635 * 0.02562 * 9 8 6 11 11 C 1.47768 * 119.99399 * 180.02562 * 9 8 6 12 12 C 1.40634 * 119.80604 * 359.72513 * 11 9 8 13 13 C 1.35706 * 120.91827 * 179.72801 * 12 11 9 14 14 C 1.40748 * 120.11206 * 0.52754 * 13 12 11 15 15 N 1.33658 * 120.82921 * 179.77832 * 14 13 12 16 16 C 1.31120 * 121.39339 * 179.97438 * 15 14 13 17 17 C 1.39316 * 121.77060 * 0.02562 * 16 15 14 18 18 C 1.36578 * 119.90648 * 359.97438 * 17 16 15 19 19 C 1.40896 * 118.15798 * 0.02562 * 18 17 16 20 20 C 1.38550 * 119.80260 * 180.02562 * 11 9 8 21 21 C 1.53188 * 109.14868 * 298.70515 * 6 5 4 22 22 N 1.46920 * 109.58765 * 120.36206 * 2 1 3 23 23 C 1.36935 * 120.63248 * 353.37385 * 22 2 1 24 24 H 1.08001 * 119.99701 * 41.20329 * 23 22 2 25 25 C 1.38812 * 120.00277 * 221.20361 * 23 22 2 26 26 N 1.31614 * 120.00488 * 214.88125 * 25 23 22 27 27 Si 1.86805 * 119.99561 * 34.88046 * 25 23 22 28 28 H 1.48498 * 109.47182 * 84.62620 * 27 25 23 29 29 H 1.48501 * 109.46955 * 204.62654 * 27 25 23 30 30 H 1.48504 * 109.47350 * 324.62550 * 27 25 23 31 31 H 1.08998 * 109.46549 * 299.64103 * 1 2 3 32 32 H 1.08998 * 109.47036 * 59.63634 * 1 2 3 33 33 H 1.09002 * 109.47062 * 179.63902 * 1 2 3 34 34 H 1.08997 * 109.49741 * 305.52678 * 4 2 1 35 35 H 1.08993 * 109.49717 * 65.59702 * 4 2 1 36 36 H 1.08997 * 109.45815 * 181.38587 * 5 4 2 37 37 H 1.09000 * 109.46289 * 301.35199 * 5 4 2 38 38 H 0.96991 * 119.99906 * 335.37876 * 8 6 5 39 39 H 1.07998 * 119.53695 * 0.02562 * 12 11 9 40 40 H 1.08003 * 119.93857 * 180.28383 * 13 12 11 41 41 H 1.07996 * 119.11112 * 180.02562 * 16 15 14 42 42 H 1.07994 * 120.04587 * 179.97438 * 17 16 15 43 43 H 1.07994 * 120.92409 * 179.97438 * 18 17 16 44 44 H 1.08000 * 120.30153 * 359.97438 * 20 11 9 45 45 H 1.09000 * 109.59155 * 294.72762 * 21 6 5 46 46 H 1.08997 * 109.59019 * 174.43416 * 21 6 5 47 47 H 0.96994 * 120.00459 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0435 -0.7293 -1.2456 5 6 3.5674 -0.8479 -1.1703 6 6 3.9594 -1.6675 0.0651 7 1 5.0436 -1.7716 0.1078 8 7 3.3428 -2.9941 -0.0131 9 6 3.8960 -4.0338 0.6423 10 8 4.9061 -3.8708 1.2986 11 6 3.2744 -5.3720 0.5630 12 6 2.1025 -5.5548 -0.1927 13 6 1.5158 -6.7750 -0.2855 14 6 2.0717 -7.8788 0.3880 15 7 1.5033 -9.0860 0.3101 16 6 2.0119 -10.1219 0.9326 17 6 3.1666 -10.0191 1.7052 18 6 3.7989 -8.8147 1.8280 19 6 3.2493 -7.7039 1.1577 20 6 3.8460 -6.4380 1.2387 21 6 3.4651 -0.9472 1.3235 22 7 2.0226 -0.6996 1.1943 23 6 1.1538 -1.1129 2.1688 24 1 0.2057 -1.5523 1.8960 25 6 1.4917 -0.9671 3.5073 26 7 1.1108 -1.8714 4.3845 27 14 2.4871 0.5126 4.0633 28 1 1.5754 1.6590 4.3075 29 1 3.2105 0.1797 5.3168 30 1 3.4667 0.8752 3.0078 31 1 -0.3632 0.5083 0.8932 32 1 -0.3633 0.5195 -0.8867 33 1 -0.3633 -1.0277 -0.0065 34 1 1.6029 -1.7252 -1.2916 35 1 1.7655 -0.1669 -2.1369 36 1 3.9377 -1.3446 -2.0671 37 1 4.0061 0.1474 -1.0993 38 1 2.5367 -3.1241 -0.5364 39 1 1.6661 -4.7134 -0.7103 40 1 0.6187 -6.8984 -0.8740 41 1 1.5226 -11.0805 0.8439 42 1 3.5613 -10.8905 2.2063 43 1 4.6947 -8.7162 2.4230 44 1 4.7435 -6.2951 1.8223 45 1 3.9903 0.0018 1.4315 46 1 3.6521 -1.5699 2.1983 47 1 1.3472 -1.7697 5.3197 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071788960.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:57:58 Heat of formation + Delta-G solvation = 22.360954 kcal Electronic energy + Delta-G solvation = -29770.422537 eV Core-core repulsion = 25917.624409 eV Total energy + Delta-G solvation = -3852.798128 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.94007 -40.98759 -39.35287 -37.66606 -35.87036 -34.57478 -34.42586 -32.70262 -32.51220 -31.22204 -31.04680 -27.99684 -26.72472 -25.72552 -24.86027 -24.09144 -23.23144 -22.43944 -21.96407 -20.55816 -19.54339 -18.86336 -18.39450 -17.78777 -17.23275 -16.79480 -16.72359 -16.15320 -15.93678 -15.54308 -15.44675 -15.29742 -15.10115 -14.96399 -14.87290 -14.43301 -14.41840 -14.34268 -14.01311 -13.81857 -13.43398 -13.09238 -12.98008 -12.72165 -12.68259 -12.58425 -12.49251 -12.43249 -12.16606 -11.79948 -11.60861 -11.60041 -11.36377 -11.15296 -10.99772 -10.52536 -10.50927 -10.06067 -9.78984 -9.33139 -8.54633 -8.24397 -5.47237 -0.79330 -0.33964 0.87852 1.33118 1.39421 1.43242 1.46415 2.17175 2.40492 2.47767 2.95956 3.08632 3.27528 3.45127 3.54890 3.66406 3.74022 3.93705 3.98351 4.01282 4.05654 4.06333 4.15962 4.28835 4.38481 4.51417 4.61530 4.64881 4.74470 4.76636 4.84252 4.87394 4.94599 5.00981 5.02613 5.03542 5.10853 5.13531 5.19218 5.24293 5.28383 5.30276 5.48061 5.57408 5.61320 5.67387 5.76215 5.95895 6.29966 6.59266 6.87845 7.05758 7.24927 7.71113 8.21134 8.95404 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.013212 B = 0.003535 C = 0.003297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2118.740594 B = 7919.376103 C = 8490.619094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.152 3.848 3 H 0.033 0.967 4 C -0.122 4.122 5 C -0.110 4.110 6 C 0.129 3.871 7 H 0.078 0.922 8 N -0.686 5.686 9 C 0.554 3.446 10 O -0.586 6.586 11 C -0.145 4.145 12 C -0.071 4.071 13 C -0.103 4.103 14 C 0.123 3.877 15 N -0.506 5.506 16 C 0.138 3.862 17 C -0.169 4.169 18 C -0.057 4.057 19 C -0.129 4.129 20 C -0.036 4.036 21 C 0.134 3.866 22 N -0.599 5.599 23 C -0.241 4.241 24 H 0.050 0.950 25 C -0.003 4.003 26 N -0.928 5.928 27 Si 0.891 3.109 28 H -0.290 1.290 29 H -0.312 1.312 30 H -0.246 1.246 31 H 0.033 0.967 32 H 0.077 0.923 33 H 0.042 0.958 34 H 0.058 0.942 35 H 0.095 0.905 36 H 0.088 0.912 37 H 0.084 0.916 38 H 0.407 0.593 39 H 0.148 0.852 40 H 0.157 0.843 41 H 0.197 0.803 42 H 0.180 0.820 43 H 0.162 0.838 44 H 0.139 0.861 45 H 0.033 0.967 46 H 0.024 0.976 47 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.042 -12.028 -14.423 19.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.047 3.953 3 H 0.051 0.949 4 C -0.161 4.161 5 C -0.148 4.148 6 C 0.023 3.977 7 H 0.096 0.904 8 N -0.336 5.336 9 C 0.342 3.658 10 O -0.469 6.469 11 C -0.148 4.148 12 C -0.091 4.091 13 C -0.121 4.121 14 C 0.002 3.998 15 N -0.214 5.214 16 C -0.034 4.034 17 C -0.188 4.188 18 C -0.082 4.082 19 C -0.131 4.131 20 C -0.056 4.056 21 C 0.008 3.992 22 N -0.324 5.324 23 C -0.370 4.370 24 H 0.068 0.932 25 C -0.201 4.201 26 N -0.571 5.571 27 Si 0.719 3.281 28 H -0.218 1.218 29 H -0.240 1.240 30 H -0.170 1.170 31 H 0.052 0.948 32 H 0.096 0.904 33 H 0.062 0.938 34 H 0.077 0.923 35 H 0.113 0.887 36 H 0.107 0.893 37 H 0.103 0.897 38 H 0.245 0.755 39 H 0.166 0.834 40 H 0.174 0.826 41 H 0.214 0.786 42 H 0.197 0.803 43 H 0.180 0.820 44 H 0.157 0.843 45 H 0.050 0.950 46 H 0.043 0.957 47 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 3.942 -11.879 -14.389 19.071 hybrid contribution 0.730 1.017 1.816 2.205 sum 4.672 -10.863 -12.573 17.260 Atomic orbital electron populations 1.21696 0.94967 1.01070 1.00754 1.20913 0.94057 0.93791 0.86506 0.94888 1.21971 0.94902 1.01023 0.98182 1.21743 0.97028 1.00280 0.95715 1.21552 0.96935 0.82012 0.97182 0.90360 1.45693 1.29773 1.07941 1.50231 1.18480 0.83493 0.85224 0.78608 1.90693 1.27384 1.85866 1.42911 1.20009 0.98501 0.93359 1.02938 1.21043 0.93164 0.98271 0.96618 1.20870 1.00917 0.90360 0.99980 1.19225 0.92057 0.92968 0.95529 1.68117 1.32141 0.99067 1.22109 1.23782 0.92364 0.97864 0.89363 1.22330 0.96762 0.99351 1.00403 1.21930 0.99592 0.91505 0.95206 1.18990 0.97605 0.95157 1.01379 1.21516 0.98535 0.90683 0.94830 1.21583 0.85200 0.96287 0.96145 1.44417 1.01703 1.65881 1.20398 1.18411 1.01248 1.32512 0.84854 0.93207 1.26055 0.98686 0.98765 0.96616 1.70177 1.50456 1.33150 1.03275 0.86580 0.79715 0.84306 0.77544 1.21758 1.24025 1.16975 0.94765 0.90392 0.93836 0.92299 0.88667 0.89313 0.89726 0.75506 0.83443 0.82565 0.78625 0.80265 0.82023 0.84322 0.94963 0.95699 0.93445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.21 8.07 71.98 0.58 -3.63 16 2 C 0.15 5.16 3.50 44.98 0.16 5.32 16 3 H 0.03 1.12 8.14 -2.38 -0.02 1.10 16 4 C -0.12 -3.03 5.21 30.68 0.16 -2.87 16 5 C -0.11 -2.67 5.59 30.73 0.17 -2.50 16 6 C 0.13 4.38 2.83 45.17 0.13 4.50 16 7 H 0.08 2.71 7.58 -2.39 -0.02 2.69 16 8 N -0.69 -23.27 4.87 -444.62 -2.16 -25.44 16 9 C 0.55 21.42 7.73 86.76 0.67 22.09 16 10 O -0.59 -26.68 15.97 -3.90 -0.06 -26.74 16 11 C -0.15 -4.90 5.87 -20.10 -0.12 -5.02 16 12 C -0.07 -2.02 9.44 22.27 0.21 -1.81 16 13 C -0.10 -2.79 9.95 22.30 0.22 -2.56 16 14 C 0.12 3.49 6.61 40.35 0.27 3.76 16 15 N -0.51 -12.80 10.33 -188.45 -1.95 -14.75 16 16 C 0.14 2.40 11.15 85.06 0.95 3.35 16 17 C -0.17 -2.52 10.03 22.14 0.22 -2.30 16 18 C -0.06 -1.14 9.89 22.53 0.22 -0.92 16 19 C -0.13 -3.58 5.74 -21.28 -0.12 -3.71 16 20 C -0.04 -1.13 9.35 22.82 0.21 -0.92 16 21 C 0.13 5.83 4.19 86.36 0.36 6.19 16 22 N -0.60 -26.42 2.39 -675.20 -1.61 -28.03 16 23 C -0.24 -13.01 8.42 84.03 0.71 -12.30 16 24 H 0.05 2.92 6.83 -2.91 -0.02 2.90 16 25 C 0.00 -0.17 4.82 84.86 0.41 0.24 16 26 N -0.93 -58.86 13.97 21.65 0.30 -58.56 16 27 Si 0.89 46.31 27.39 68.60 1.88 48.19 16 28 H -0.29 -14.95 7.11 99.48 0.71 -14.24 16 29 H -0.31 -16.87 7.11 99.48 0.71 -16.17 16 30 H -0.25 -11.93 5.24 99.48 0.52 -11.41 16 31 H 0.03 1.30 7.68 -2.39 -0.02 1.29 16 32 H 0.08 1.94 8.14 -2.39 -0.02 1.93 16 33 H 0.04 1.52 7.42 -2.39 -0.02 1.50 16 34 H 0.06 1.47 6.41 -2.39 -0.02 1.46 16 35 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 36 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 37 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 38 H 0.41 11.95 4.77 -92.71 -0.44 11.51 16 39 H 0.15 3.52 6.35 -2.91 -0.02 3.51 16 40 H 0.16 3.52 8.06 -2.91 -0.02 3.50 16 41 H 0.20 1.76 8.06 -2.91 -0.02 1.73 16 42 H 0.18 1.16 8.06 -2.91 -0.02 1.13 16 43 H 0.16 2.45 8.06 -2.91 -0.02 2.42 16 44 H 0.14 4.37 7.62 -2.91 -0.02 4.35 16 45 H 0.03 1.39 6.71 -2.39 -0.02 1.38 16 46 H 0.02 1.30 7.01 -2.39 -0.02 1.29 16 47 H 0.26 15.78 8.31 -92.71 -0.77 15.01 16 Total: -1.00 -78.39 372.37 2.17 -76.22 By element: Atomic # 1 Polarization: 21.83 SS G_CDS: 0.37 Total: 22.20 kcal Atomic # 6 Polarization: 1.50 SS G_CDS: 5.41 Total: 6.91 kcal Atomic # 7 Polarization: -121.36 SS G_CDS: -5.42 Total: -126.78 kcal Atomic # 8 Polarization: -26.68 SS G_CDS: -0.06 Total: -26.74 kcal Atomic # 14 Polarization: 46.31 SS G_CDS: 1.88 Total: 48.19 kcal Total: -78.39 2.17 -76.22 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071788960.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.579 kcal (2) G-P(sol) polarization free energy of solvation -78.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.218 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds