Wall clock time and date at job start Tue Mar 31 2020 23:58:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08993 * 109.58791 * 2 1 4 4 C 1.53164 * 109.58882 * 239.56387 * 2 1 3 5 5 C 1.53043 * 109.32658 * 185.57161 * 4 2 1 6 6 C 1.53041 * 109.52698 * 61.37828 * 5 4 2 7 7 H 1.08998 * 109.49750 * 58.58472 * 6 5 4 8 8 N 1.46491 * 109.49866 * 178.65879 * 6 5 4 9 9 C 1.34773 * 120.00008 * 204.99860 * 8 6 5 10 10 O 1.21565 * 120.00031 * 359.97438 * 9 8 6 11 11 C 1.47775 * 120.00196 * 179.97438 * 9 8 6 12 12 C 1.40624 * 119.80286 * 359.72908 * 11 9 8 13 13 C 1.35698 * 120.92185 * 179.72736 * 12 11 9 14 14 C 1.40757 * 120.11059 * 0.51789 * 13 12 11 15 15 N 1.33651 * 120.83176 * 179.76247 * 14 13 12 16 16 C 1.31119 * 121.39357 * 180.02562 * 15 14 13 17 17 C 1.39312 * 121.76972 * 359.97438 * 16 15 14 18 18 C 1.36577 * 119.90553 * 0.02562 * 17 16 15 19 19 C 1.40887 * 118.16076 * 359.97438 * 18 17 16 20 20 C 1.38546 * 119.80358 * 179.97438 * 11 9 8 21 21 C 1.53199 * 109.31032 * 298.63954 * 6 5 4 22 22 N 1.46928 * 108.77637 * 54.63481 * 21 6 5 23 23 C 1.36936 * 120.63091 * 126.41172 * 22 21 6 24 24 H 1.08002 * 120.00021 * 209.01107 * 23 22 21 25 25 C 1.38804 * 119.99712 * 29.01738 * 23 22 21 26 26 N 1.31617 * 120.00554 * 15.01566 * 25 23 22 27 27 Si 1.86804 * 119.99695 * 195.02282 * 25 23 22 28 28 H 1.48498 * 109.47214 * 359.97438 * 27 25 23 29 29 H 1.48503 * 109.47336 * 120.00014 * 27 25 23 30 30 H 1.48506 * 109.46834 * 239.99637 * 27 25 23 31 31 H 1.08999 * 109.46970 * 299.71712 * 1 2 3 32 32 H 1.09005 * 109.47328 * 59.71192 * 1 2 3 33 33 H 1.08994 * 109.47572 * 179.71425 * 1 2 3 34 34 H 1.09005 * 109.47901 * 65.62405 * 4 2 1 35 35 H 1.09001 * 109.50431 * 305.53990 * 4 2 1 36 36 H 1.08999 * 109.46281 * 301.35939 * 5 4 2 37 37 H 1.09002 * 109.45784 * 181.38795 * 5 4 2 38 38 H 0.97001 * 120.00400 * 24.98920 * 8 6 5 39 39 H 1.08003 * 119.54348 * 359.97438 * 12 11 9 40 40 H 1.08002 * 119.94877 * 180.27432 * 13 12 11 41 41 H 1.08003 * 119.11696 * 180.02562 * 16 15 14 42 42 H 1.08007 * 120.04667 * 180.02562 * 17 16 15 43 43 H 1.08002 * 120.91956 * 180.02562 * 18 17 16 44 44 H 1.08006 * 120.30297 * 0.02986 * 20 11 9 45 45 H 1.08994 * 109.58849 * 174.42323 * 21 6 5 46 46 H 1.08999 * 109.58526 * 294.85015 * 21 6 5 47 47 H 0.96998 * 120.00355 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0435 -0.7310 -1.2441 5 6 3.5675 -0.8495 -1.1690 6 6 3.9568 -1.6658 0.0655 7 1 3.4981 -2.6529 0.0085 8 7 5.4140 -1.8060 0.1194 9 6 5.9671 -2.8482 0.7707 10 8 5.2568 -3.6716 1.3140 11 6 7.4371 -2.9900 0.8246 12 6 8.2548 -2.0381 0.1898 13 6 9.6071 -2.1431 0.2296 14 6 10.2122 -3.2209 0.9030 15 7 11.5426 -3.3411 0.9472 16 6 12.1178 -4.3407 1.5709 17 6 11.3755 -5.3260 2.2182 18 6 10.0111 -5.2647 2.2124 19 6 9.3967 -4.1891 1.5413 20 6 8.0013 -4.0626 1.4958 21 6 3.4650 -0.9454 1.3250 22 7 2.0225 -0.6981 1.1954 23 6 1.1536 -1.1101 2.1704 24 1 0.1358 -1.3648 1.9142 25 6 1.5810 -1.2001 3.4879 26 7 2.7043 -0.6215 3.8565 27 14 0.5620 -2.1427 4.7380 28 1 -0.6470 -2.6949 4.0758 29 1 1.3711 -3.2544 5.2990 30 1 0.1517 -1.2275 5.8332 31 1 -0.3633 0.5094 0.8925 32 1 -0.3634 0.5183 -0.8874 33 1 -0.3634 -1.0276 -0.0051 34 1 1.7657 -0.1694 -2.1362 35 1 1.6028 -1.7270 -1.2889 36 1 4.0061 0.1459 -1.0995 37 1 3.9375 -1.3476 -2.0652 38 1 5.9809 -1.1488 -0.3139 39 1 7.8003 -1.2097 -0.3333 40 1 10.2202 -1.4007 -0.2597 41 1 13.1960 -4.4015 1.5838 42 1 11.8783 -6.1372 2.7239 43 1 9.4196 -6.0195 2.7094 44 1 7.3718 -4.7953 1.9790 45 1 3.6517 -1.5691 2.1991 46 1 3.9902 0.0037 1.4317 47 1 3.0031 -0.6848 4.7771 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071788961.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:58:01 Heat of formation + Delta-G solvation = 17.407873 kcal Electronic energy + Delta-G solvation = -28923.038311 eV Core-core repulsion = 25070.025401 eV Total energy + Delta-G solvation = -3853.012909 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.96403 -40.91257 -39.32637 -37.70967 -36.10107 -34.69982 -34.50387 -32.70652 -31.79334 -31.25048 -31.07292 -27.83034 -26.95680 -25.56608 -24.87702 -24.00854 -23.21653 -22.43356 -21.78976 -21.01249 -19.37602 -18.83573 -18.35683 -17.93991 -17.28179 -16.87999 -16.65960 -16.06797 -15.74072 -15.54714 -15.47868 -15.29175 -15.11010 -14.97248 -14.95274 -14.47733 -14.44891 -14.11123 -14.01787 -13.51755 -13.13612 -13.08650 -12.82045 -12.72455 -12.68638 -12.55959 -12.48069 -12.26710 -12.11396 -11.97378 -11.66780 -11.62646 -11.44337 -11.15189 -10.98013 -10.55309 -10.54604 -10.17476 -9.84092 -9.36287 -8.62815 -7.85400 -5.31496 -0.83196 -0.36584 0.84566 1.38853 1.40751 1.43627 1.51845 2.07598 2.30802 2.49974 3.06276 3.24875 3.31017 3.52636 3.55430 3.70168 3.76135 3.92382 3.97796 3.98817 4.02752 4.09685 4.25725 4.28318 4.39461 4.49378 4.60708 4.71477 4.74573 4.80410 4.85653 4.89153 4.94000 5.00303 5.01263 5.07285 5.16461 5.18930 5.24311 5.30607 5.33796 5.43027 5.49106 5.55075 5.62084 5.70312 5.73431 5.80343 6.40583 6.55678 6.85359 7.14879 7.23206 7.89992 8.38815 9.19601 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014602 B = 0.002859 C = 0.002505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1917.085279 B = 9792.475340 C =11173.443240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.152 3.848 3 H 0.023 0.977 4 C -0.118 4.118 5 C -0.108 4.108 6 C 0.131 3.869 7 H 0.052 0.948 8 N -0.700 5.700 9 C 0.549 3.451 10 O -0.583 6.583 11 C -0.143 4.143 12 C -0.071 4.071 13 C -0.098 4.098 14 C 0.124 3.876 15 N -0.503 5.503 16 C 0.140 3.860 17 C -0.169 4.169 18 C -0.058 4.058 19 C -0.129 4.129 20 C -0.036 4.036 21 C 0.179 3.821 22 N -0.603 5.603 23 C -0.247 4.247 24 H 0.076 0.924 25 C -0.056 4.056 26 N -0.934 5.934 27 Si 0.956 3.044 28 H -0.262 1.262 29 H -0.301 1.301 30 H -0.289 1.289 31 H 0.037 0.963 32 H 0.079 0.921 33 H 0.045 0.955 34 H 0.097 0.903 35 H 0.052 0.948 36 H 0.075 0.925 37 H 0.087 0.913 38 H 0.412 0.588 39 H 0.160 0.840 40 H 0.162 0.838 41 H 0.197 0.803 42 H 0.178 0.822 43 H 0.159 0.841 44 H 0.134 0.866 45 H 0.043 0.957 46 H -0.002 1.002 47 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.791 -4.970 -11.381 21.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.047 3.953 3 H 0.041 0.959 4 C -0.157 4.157 5 C -0.146 4.146 6 C 0.025 3.975 7 H 0.070 0.930 8 N -0.351 5.351 9 C 0.337 3.663 10 O -0.464 6.464 11 C -0.146 4.146 12 C -0.091 4.091 13 C -0.117 4.117 14 C 0.003 3.997 15 N -0.212 5.212 16 C -0.032 4.032 17 C -0.188 4.188 18 C -0.084 4.084 19 C -0.131 4.131 20 C -0.056 4.056 21 C 0.052 3.948 22 N -0.328 5.328 23 C -0.378 4.378 24 H 0.093 0.907 25 C -0.251 4.251 26 N -0.581 5.581 27 Si 0.785 3.215 28 H -0.186 1.186 29 H -0.229 1.229 30 H -0.216 1.216 31 H 0.057 0.943 32 H 0.098 0.902 33 H 0.064 0.936 34 H 0.115 0.885 35 H 0.071 0.929 36 H 0.094 0.906 37 H 0.105 0.895 38 H 0.250 0.750 39 H 0.177 0.823 40 H 0.180 0.820 41 H 0.214 0.786 42 H 0.195 0.805 43 H 0.176 0.824 44 H 0.152 0.848 45 H 0.061 0.939 46 H 0.016 0.984 47 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 17.705 -4.800 -11.342 21.567 hybrid contribution -0.915 -0.806 1.726 2.114 sum 16.789 -5.605 -9.616 20.144 Atomic orbital electron populations 1.21738 0.94773 1.01129 1.01081 1.20818 0.94303 0.93439 0.86706 0.95932 1.21946 0.94530 1.00880 0.98340 1.21665 0.97158 1.00050 0.95725 1.21571 0.78796 0.99279 0.97881 0.92956 1.45793 1.07908 1.26649 1.54792 1.18695 0.88389 0.81295 0.77911 1.90784 1.64369 1.44299 1.46973 1.19929 0.91765 0.98941 1.04000 1.21119 0.93334 0.97683 0.96959 1.20917 0.94229 0.97378 0.99152 1.19287 0.89757 0.94673 0.96020 1.68136 1.09827 1.24255 1.18994 1.23774 1.02598 0.87748 0.89078 1.22328 0.93931 1.01634 1.00928 1.21923 0.96472 0.95534 0.94452 1.18971 0.93561 0.98455 1.02143 1.21514 0.93695 0.96128 0.94284 1.20771 0.83777 0.95291 0.94952 1.44339 1.02526 1.65735 1.20156 1.19519 0.95143 1.36442 0.86684 0.90686 1.25800 0.99054 1.01183 0.99027 1.70164 1.25051 1.46486 1.16380 0.85359 0.78626 0.78010 0.79492 1.18609 1.22865 1.21561 0.94342 0.90223 0.93589 0.88476 0.92939 0.90627 0.89491 0.74951 0.82268 0.82042 0.78636 0.80462 0.82351 0.84832 0.93895 0.98377 0.94749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.66 7.94 71.98 0.57 -4.09 16 2 C 0.15 6.04 3.50 44.96 0.16 6.20 16 3 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 4 C -0.12 -3.62 5.37 30.66 0.16 -3.45 16 5 C -0.11 -3.15 5.36 30.62 0.16 -2.99 16 6 C 0.13 5.12 2.60 45.07 0.12 5.24 16 7 H 0.05 2.39 7.58 -2.39 -0.02 2.37 16 8 N -0.70 -23.09 5.03 -445.11 -2.24 -25.33 16 9 C 0.55 20.60 7.73 86.77 0.67 21.27 16 10 O -0.58 -28.00 15.97 -3.92 -0.06 -28.06 16 11 C -0.14 -4.26 5.87 -20.10 -0.12 -4.38 16 12 C -0.07 -1.58 9.44 22.26 0.21 -1.37 16 13 C -0.10 -2.10 9.95 22.30 0.22 -1.88 16 14 C 0.12 2.96 6.61 40.35 0.27 3.23 16 15 N -0.50 -10.77 10.33 -188.45 -1.95 -12.72 16 16 C 0.14 2.00 11.15 85.06 0.95 2.95 16 17 C -0.17 -2.10 10.03 22.14 0.22 -1.88 16 18 C -0.06 -1.03 9.89 22.53 0.22 -0.80 16 19 C -0.13 -3.14 5.74 -21.29 -0.12 -3.26 16 20 C -0.04 -1.04 9.35 22.82 0.21 -0.83 16 21 C 0.18 9.06 4.87 86.36 0.42 9.48 16 22 N -0.60 -30.73 2.99 -675.28 -2.02 -32.75 16 23 C -0.25 -13.96 8.60 84.03 0.72 -13.24 16 24 H 0.08 4.08 6.21 -2.91 -0.02 4.06 16 25 C -0.06 -3.30 4.96 84.86 0.42 -2.88 16 26 N -0.93 -58.65 11.14 21.65 0.24 -58.41 16 27 Si 0.96 48.01 29.58 68.60 2.03 50.04 16 28 H -0.26 -12.33 7.11 99.48 0.71 -11.62 16 29 H -0.30 -15.58 7.11 99.48 0.71 -14.87 16 30 H -0.29 -14.24 7.11 99.48 0.71 -13.53 16 31 H 0.04 1.53 7.62 -2.39 -0.02 1.51 16 32 H 0.08 2.19 8.14 -2.38 -0.02 2.17 16 33 H 0.04 1.70 7.45 -2.39 -0.02 1.68 16 34 H 0.10 2.26 8.14 -2.38 -0.02 2.24 16 35 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 36 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 37 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 38 H 0.41 9.92 6.59 -92.71 -0.61 9.31 16 39 H 0.16 2.53 6.35 -2.91 -0.02 2.51 16 40 H 0.16 2.64 8.06 -2.91 -0.02 2.62 16 41 H 0.20 1.21 8.06 -2.91 -0.02 1.19 16 42 H 0.18 0.80 8.06 -2.91 -0.02 0.78 16 43 H 0.16 2.15 8.06 -2.91 -0.02 2.12 16 44 H 0.13 4.01 7.62 -2.91 -0.02 3.99 16 45 H 0.04 2.63 6.06 -2.39 -0.01 2.61 16 46 H 0.00 -0.09 8.14 -2.39 -0.02 -0.11 16 47 H 0.24 15.00 8.31 -92.71 -0.77 14.23 16 Total: -1.00 -81.88 378.29 1.86 -80.02 By element: Atomic # 1 Polarization: 19.48 SS G_CDS: 0.38 Total: 19.86 kcal Atomic # 6 Polarization: 1.86 SS G_CDS: 5.47 Total: 7.33 kcal Atomic # 7 Polarization: -123.24 SS G_CDS: -5.96 Total: -129.20 kcal Atomic # 8 Polarization: -28.00 SS G_CDS: -0.06 Total: -28.06 kcal Atomic # 14 Polarization: 48.01 SS G_CDS: 2.03 Total: 50.04 kcal Total: -81.88 1.86 -80.02 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071788961.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.432 kcal (2) G-P(sol) polarization free energy of solvation -81.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.024 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds