Wall clock time and date at job start Tue Mar 31 2020 23:57:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09008 * 109.58196 * 2 1 4 4 C 1.53191 * 109.58969 * 239.71772 * 2 1 3 5 5 C 1.53043 * 109.31510 * 185.57138 * 4 2 1 6 6 C 1.53045 * 109.53309 * 61.36621 * 5 4 2 7 7 H 1.08998 * 109.49656 * 178.65078 * 6 5 4 8 8 N 1.46500 * 109.50009 * 58.58564 * 6 5 4 9 9 C 1.34780 * 120.00213 * 155.06272 * 8 6 5 10 10 O 1.21563 * 119.99494 * 359.97438 * 9 8 6 11 11 C 1.47754 * 120.00177 * 180.02562 * 9 8 6 12 12 C 1.40603 * 120.26778 * 0.02562 * 11 9 8 13 13 N 1.30799 * 121.53706 * 179.97438 * 12 11 9 14 14 C 1.33817 * 121.72359 * 0.02562 * 13 12 11 15 15 C 1.40521 * 120.82550 * 180.02562 * 14 13 12 16 16 C 1.36136 * 119.81275 * 179.97438 * 15 14 13 17 17 C 1.39341 * 121.09258 * 0.04465 * 16 15 14 18 18 C 1.36135 * 120.83025 * 359.93047 * 17 16 15 19 19 C 1.40545 * 119.62240 * 0.04444 * 18 17 16 20 20 C 1.39008 * 120.26996 * 180.02562 * 11 9 8 21 21 C 1.53192 * 109.33807 * 298.61681 * 6 5 4 22 22 N 1.46927 * 109.58968 * 120.42456 * 2 1 3 23 23 C 1.36935 * 120.62711 * 353.41960 * 22 2 1 24 24 H 1.07998 * 120.00066 * 29.68224 * 23 22 2 25 25 C 1.38814 * 120.00014 * 209.67223 * 23 22 2 26 26 N 1.31627 * 119.99599 * 12.16747 * 25 23 22 27 27 Si 1.86798 * 120.00198 * 192.16731 * 25 23 22 28 28 H 1.48504 * 109.46896 * 90.00231 * 27 25 23 29 29 H 1.48496 * 109.47043 * 210.00293 * 27 25 23 30 30 H 1.48499 * 109.47173 * 330.00300 * 27 25 23 31 31 H 1.09007 * 109.46892 * 180.28280 * 1 2 3 32 32 H 1.08995 * 109.47157 * 300.27968 * 1 2 3 33 33 H 1.08999 * 109.47171 * 60.28644 * 1 2 3 34 34 H 1.09004 * 109.49514 * 65.62421 * 4 2 1 35 35 H 1.09002 * 109.49718 * 305.52752 * 4 2 1 36 36 H 1.08995 * 109.46118 * 301.34749 * 5 4 2 37 37 H 1.09001 * 109.44821 * 181.37547 * 5 4 2 38 38 H 0.97006 * 119.99674 * 335.06408 * 8 6 5 39 39 H 1.08000 * 119.23323 * 0.02562 * 12 11 9 40 40 H 1.07997 * 120.09268 * 359.97438 * 15 14 13 41 41 H 1.08001 * 119.45223 * 179.97438 * 16 15 14 42 42 H 1.08001 * 119.58392 * 179.97438 * 17 16 15 43 43 H 1.08004 * 120.18865 * 180.31844 * 18 17 16 44 44 H 1.07997 * 121.01459 * 0.02562 * 20 11 9 45 45 H 1.09006 * 109.58620 * 174.44085 * 21 6 5 46 46 H 1.08996 * 109.58544 * 294.86669 * 21 6 5 47 47 H 0.96998 * 119.99813 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8953 1.0270 0.0000 4 6 2.0436 -0.7278 -1.2463 5 6 3.5676 -0.8463 -1.1712 6 6 3.9570 -1.6656 0.0614 7 1 5.0413 -1.7700 0.1012 8 7 3.3407 -2.9923 -0.0185 9 6 3.8966 -4.0339 0.6316 10 8 4.9096 -3.8725 1.2839 11 6 3.2753 -5.3720 0.5506 12 6 2.1045 -5.5653 -0.2036 13 7 1.5341 -6.7389 -0.2928 14 6 2.0345 -7.8135 0.3283 15 6 1.4064 -9.0658 0.2191 16 6 1.9335 -10.1454 0.8593 17 6 3.0910 -10.0325 1.6269 18 6 3.7284 -8.8366 1.7564 19 6 3.2126 -7.7008 1.1089 20 6 3.8436 -6.4500 1.2193 21 6 3.4657 -0.9487 1.3229 22 7 2.0226 -0.7010 1.1936 23 6 1.1537 -1.1161 2.1672 24 1 0.1392 -1.3809 1.9083 25 6 1.5769 -1.1968 3.4867 26 7 2.7217 -0.6549 3.8450 27 14 0.5218 -2.0744 4.7540 28 1 0.9006 -3.5094 4.8052 29 1 0.7353 -1.4582 6.0881 30 1 -0.9092 -1.9534 4.3761 31 1 -0.3633 -1.0277 0.0051 32 1 -0.3633 0.5181 0.8874 33 1 -0.3633 0.5094 -0.8925 34 1 1.7660 -0.1640 -2.1370 35 1 1.6030 -1.7237 -1.2935 36 1 4.0061 0.1489 -1.0992 37 1 3.9377 -1.3422 -2.0686 38 1 2.5325 -3.1210 -0.5394 39 1 1.6663 -4.7252 -0.7220 40 1 0.5081 -9.1714 -0.3710 41 1 1.4459 -11.1051 0.7718 42 1 3.4879 -10.9049 2.1247 43 1 4.6278 -8.7620 2.3497 44 1 4.7423 -6.3299 1.8060 45 1 3.6530 -1.5748 2.1954 46 1 3.9909 0.0001 1.4320 47 1 3.0173 -0.7109 4.7671 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071849987.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:57:44 Heat of formation + Delta-G solvation = 41.022813 kcal Electronic energy + Delta-G solvation = -29863.833164 eV Core-core repulsion = 26011.844275 eV Total energy + Delta-G solvation = -3851.988889 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.96149 -39.43636 -37.70667 -36.85943 -34.21171 -33.45275 -32.76317 -31.43057 -30.21295 -30.05516 -29.74754 -26.31415 -25.12746 -24.42593 -24.10145 -22.18990 -22.16444 -21.21041 -20.44013 -18.81167 -18.33999 -17.83315 -17.10003 -16.30316 -15.85796 -15.38967 -14.99960 -14.70346 -14.60621 -14.30023 -14.11856 -13.95212 -13.81431 -13.58854 -13.45411 -13.21265 -13.00853 -12.81670 -12.49755 -11.98489 -11.92367 -11.81005 -11.62228 -11.23441 -11.16473 -10.94037 -10.88625 -10.72213 -10.54903 -10.38077 -10.32391 -9.98059 -9.92100 -9.53686 -9.46559 -9.28311 -8.90899 -8.46957 -8.44472 -8.33413 -6.58822 -5.73408 -3.19592 0.18757 0.55699 1.80689 2.57922 3.38755 3.44988 3.45337 3.46616 3.62491 4.09430 4.13886 4.46344 4.50541 4.62925 4.76430 4.76965 4.96097 4.99519 5.14589 5.30057 5.31436 5.36229 5.43029 5.50700 5.59293 5.64760 5.77173 5.82029 5.94611 6.00550 6.10282 6.13718 6.17766 6.24027 6.32529 6.35024 6.37926 6.44119 6.51256 6.59795 6.65372 6.67611 6.88002 7.04771 7.11436 7.38287 7.72645 7.78047 7.84266 8.02194 8.50895 8.68095 9.25018 9.88689 10.44400 11.33959 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011404 B = 0.003885 C = 0.003480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2454.777670 B = 7205.170692 C = 8044.567538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.165 3.835 3 H 0.025 0.975 4 C -0.131 4.131 5 C -0.119 4.119 6 C 0.118 3.882 7 H 0.077 0.923 8 N -0.691 5.691 9 C 0.562 3.438 10 O -0.540 6.540 11 C -0.178 4.178 12 C 0.167 3.833 13 N -0.478 5.478 14 C 0.138 3.862 15 C -0.098 4.098 16 C -0.097 4.097 17 C -0.125 4.125 18 C -0.084 4.084 19 C -0.112 4.112 20 C 0.006 3.994 21 C 0.161 3.839 22 N -0.583 5.583 23 C -0.249 4.249 24 H 0.068 0.932 25 C 0.007 3.993 26 N -0.900 5.900 27 Si 0.895 3.105 28 H -0.289 1.289 29 H -0.291 1.291 30 H -0.279 1.279 31 H 0.052 0.948 32 H 0.060 0.940 33 H 0.037 0.963 34 H 0.054 0.946 35 H 0.053 0.947 36 H 0.071 0.929 37 H 0.052 0.948 38 H 0.394 0.606 39 H 0.161 0.839 40 H 0.136 0.864 41 H 0.129 0.871 42 H 0.128 0.872 43 H 0.133 0.867 44 H 0.153 0.847 45 H 0.101 0.899 46 H 0.026 0.974 47 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.688 -13.488 -10.184 16.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.058 3.942 3 H 0.043 0.957 4 C -0.170 4.170 5 C -0.157 4.157 6 C 0.012 3.988 7 H 0.095 0.905 8 N -0.342 5.342 9 C 0.347 3.653 10 O -0.419 6.419 11 C -0.184 4.184 12 C -0.007 4.007 13 N -0.186 5.186 14 C 0.017 3.983 15 C -0.116 4.116 16 C -0.117 4.117 17 C -0.143 4.143 18 C -0.103 4.103 19 C -0.114 4.114 20 C -0.021 4.021 21 C 0.034 3.966 22 N -0.306 5.306 23 C -0.378 4.378 24 H 0.086 0.914 25 C -0.192 4.192 26 N -0.545 5.545 27 Si 0.726 3.274 28 H -0.217 1.217 29 H -0.217 1.217 30 H -0.205 1.205 31 H 0.071 0.929 32 H 0.079 0.921 33 H 0.056 0.944 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.090 0.910 37 H 0.070 0.930 38 H 0.230 0.770 39 H 0.178 0.822 40 H 0.154 0.846 41 H 0.147 0.853 42 H 0.146 0.854 43 H 0.151 0.849 44 H 0.170 0.830 45 H 0.119 0.881 46 H 0.044 0.956 47 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 0.685 -13.516 -10.027 16.843 hybrid contribution -0.210 -0.293 1.095 1.153 sum 0.475 -13.809 -8.931 16.452 Atomic orbital electron populations 1.21798 0.96107 1.01278 1.00154 1.20466 0.92893 0.93653 0.87158 0.95732 1.22077 0.95135 1.00636 0.99186 1.21700 0.97034 1.00214 0.96760 1.21852 0.97007 0.81438 0.98480 0.90473 1.45769 1.29155 1.08614 1.50620 1.17791 0.84170 0.83572 0.79787 1.90759 1.25169 1.84868 1.41060 1.21126 0.98825 0.95669 1.02730 1.23065 0.90131 0.94711 0.92753 1.67943 1.31220 0.98796 1.20629 1.19012 0.92033 0.93361 0.93868 1.20814 1.00252 0.90342 1.00205 1.20945 0.95796 0.98760 0.96154 1.20909 0.96054 0.97837 0.99487 1.21082 0.99650 0.91676 0.97919 1.18846 0.97160 0.94756 1.00628 1.21965 0.97621 0.89862 0.92617 1.21249 0.83685 0.97187 0.94475 1.44061 1.02714 1.64654 1.19220 1.19098 0.94861 1.37818 0.86072 0.91419 1.25069 0.97441 0.99661 0.97034 1.69951 1.21735 1.45851 1.16931 0.86399 0.80049 0.79538 0.81454 1.21651 1.21718 1.20479 0.92932 0.92083 0.94414 0.92758 0.92787 0.90987 0.92965 0.77018 0.82165 0.84613 0.85279 0.85428 0.84932 0.82955 0.88128 0.95633 0.93677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.42 7.95 37.16 0.30 -2.12 16 2 C 0.16 3.17 3.50 -67.60 -0.24 2.93 16 3 H 0.03 0.50 8.14 -51.92 -0.42 0.08 16 4 C -0.13 -2.01 5.21 -26.61 -0.14 -2.15 16 5 C -0.12 -1.81 5.59 -26.69 -0.15 -1.96 16 6 C 0.12 2.18 2.81 -67.81 -0.19 1.99 16 7 H 0.08 1.47 7.58 -51.93 -0.39 1.07 16 8 N -0.69 -12.10 4.87 -54.66 -0.27 -12.37 16 9 C 0.56 10.59 7.74 -12.37 -0.10 10.49 16 10 O -0.54 -11.92 16.05 5.31 0.09 -11.83 16 11 C -0.18 -2.92 5.89 -104.83 -0.62 -3.53 16 12 C 0.17 2.49 10.68 -17.10 -0.18 2.31 16 13 N -0.48 -7.26 10.30 -10.67 -0.11 -7.37 16 14 C 0.14 1.97 6.61 -84.79 -0.56 1.41 16 15 C -0.10 -1.11 9.97 -39.48 -0.39 -1.50 16 16 C -0.10 -0.88 9.94 -39.93 -0.40 -1.27 16 17 C -0.12 -1.13 9.96 -39.93 -0.40 -1.53 16 18 C -0.08 -0.91 9.77 -39.47 -0.39 -1.30 16 19 C -0.11 -1.54 5.74 -106.81 -0.61 -2.15 16 20 C 0.01 0.09 9.46 -38.44 -0.36 -0.27 16 21 C 0.16 3.76 4.88 -3.67 -0.02 3.74 16 22 N -0.58 -13.59 2.91 -164.72 -0.48 -14.07 16 23 C -0.25 -6.49 8.60 -15.06 -0.13 -6.62 16 24 H 0.07 1.74 6.20 -52.49 -0.33 1.41 16 25 C 0.01 0.19 5.03 -17.43 -0.09 0.10 16 26 N -0.90 -26.26 11.01 55.49 0.61 -25.65 16 27 Si 0.90 22.18 29.57 -169.99 -5.03 17.15 16 28 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 29 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 30 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 31 H 0.05 0.94 7.40 -51.93 -0.38 0.56 16 32 H 0.06 1.20 7.67 -51.93 -0.40 0.80 16 33 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.05 0.81 6.40 -51.93 -0.33 0.47 16 36 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 37 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 38 H 0.39 6.08 4.80 -40.82 -0.20 5.89 16 39 H 0.16 2.04 6.37 -52.49 -0.33 1.71 16 40 H 0.14 1.33 8.06 -52.49 -0.42 0.91 16 41 H 0.13 0.79 8.06 -52.49 -0.42 0.36 16 42 H 0.13 0.80 8.06 -52.49 -0.42 0.37 16 43 H 0.13 1.15 8.06 -52.48 -0.42 0.72 16 44 H 0.15 2.17 7.70 -52.49 -0.40 1.77 16 45 H 0.10 2.80 6.02 -51.93 -0.31 2.48 16 46 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 47 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 LS Contribution 374.88 15.07 5.65 5.65 Total: -1.00 -32.30 374.88 -10.64 -42.94 By element: Atomic # 1 Polarization: 13.42 SS G_CDS: -6.44 Total: 6.97 kcal Atomic # 6 Polarization: 3.23 SS G_CDS: -4.66 Total: -1.43 kcal Atomic # 7 Polarization: -59.21 SS G_CDS: -0.24 Total: -59.45 kcal Atomic # 8 Polarization: -11.92 SS G_CDS: 0.09 Total: -11.83 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.03 Total: 17.15 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -32.30 -10.64 -42.94 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071849987.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.967 kcal (2) G-P(sol) polarization free energy of solvation -32.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.944 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds