Wall clock time and date at job start Tue Mar 31 2020 23:57:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09008 * 109.58196 * 2 1 4 4 C 1.53191 * 109.58969 * 239.71772 * 2 1 3 5 5 C 1.53043 * 109.31510 * 185.57138 * 4 2 1 6 6 C 1.53045 * 109.53309 * 61.36621 * 5 4 2 7 7 H 1.08998 * 109.49656 * 178.65078 * 6 5 4 8 8 N 1.46500 * 109.50009 * 58.58564 * 6 5 4 9 9 C 1.34780 * 120.00213 * 155.06272 * 8 6 5 10 10 O 1.21563 * 119.99494 * 359.97438 * 9 8 6 11 11 C 1.47754 * 120.00177 * 180.02562 * 9 8 6 12 12 C 1.40603 * 120.26778 * 0.02562 * 11 9 8 13 13 N 1.30799 * 121.53706 * 179.97438 * 12 11 9 14 14 C 1.33817 * 121.72359 * 0.02562 * 13 12 11 15 15 C 1.40521 * 120.82550 * 180.02562 * 14 13 12 16 16 C 1.36136 * 119.81275 * 179.97438 * 15 14 13 17 17 C 1.39341 * 121.09258 * 0.04465 * 16 15 14 18 18 C 1.36135 * 120.83025 * 359.93047 * 17 16 15 19 19 C 1.40545 * 119.62240 * 0.04444 * 18 17 16 20 20 C 1.39008 * 120.26996 * 180.02562 * 11 9 8 21 21 C 1.53192 * 109.33807 * 298.61681 * 6 5 4 22 22 N 1.46927 * 109.58968 * 120.42456 * 2 1 3 23 23 C 1.36935 * 120.62711 * 353.41960 * 22 2 1 24 24 H 1.07998 * 120.00066 * 29.68224 * 23 22 2 25 25 C 1.38814 * 120.00014 * 209.67223 * 23 22 2 26 26 N 1.31627 * 119.99599 * 12.16747 * 25 23 22 27 27 Si 1.86798 * 120.00198 * 192.16731 * 25 23 22 28 28 H 1.48504 * 109.46896 * 90.00231 * 27 25 23 29 29 H 1.48496 * 109.47043 * 210.00293 * 27 25 23 30 30 H 1.48499 * 109.47173 * 330.00300 * 27 25 23 31 31 H 1.09007 * 109.46892 * 180.28280 * 1 2 3 32 32 H 1.08995 * 109.47157 * 300.27968 * 1 2 3 33 33 H 1.08999 * 109.47171 * 60.28644 * 1 2 3 34 34 H 1.09004 * 109.49514 * 65.62421 * 4 2 1 35 35 H 1.09002 * 109.49718 * 305.52752 * 4 2 1 36 36 H 1.08995 * 109.46118 * 301.34749 * 5 4 2 37 37 H 1.09001 * 109.44821 * 181.37547 * 5 4 2 38 38 H 0.97006 * 119.99674 * 335.06408 * 8 6 5 39 39 H 1.08000 * 119.23323 * 0.02562 * 12 11 9 40 40 H 1.07997 * 120.09268 * 359.97438 * 15 14 13 41 41 H 1.08001 * 119.45223 * 179.97438 * 16 15 14 42 42 H 1.08001 * 119.58392 * 179.97438 * 17 16 15 43 43 H 1.08004 * 120.18865 * 180.31844 * 18 17 16 44 44 H 1.07997 * 121.01459 * 0.02562 * 20 11 9 45 45 H 1.09006 * 109.58620 * 174.44085 * 21 6 5 46 46 H 1.08996 * 109.58544 * 294.86669 * 21 6 5 47 47 H 0.96998 * 119.99813 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8953 1.0270 0.0000 4 6 2.0436 -0.7278 -1.2463 5 6 3.5676 -0.8463 -1.1712 6 6 3.9570 -1.6656 0.0614 7 1 5.0413 -1.7700 0.1012 8 7 3.3407 -2.9923 -0.0185 9 6 3.8966 -4.0339 0.6316 10 8 4.9096 -3.8725 1.2839 11 6 3.2753 -5.3720 0.5506 12 6 2.1045 -5.5653 -0.2036 13 7 1.5341 -6.7389 -0.2928 14 6 2.0345 -7.8135 0.3283 15 6 1.4064 -9.0658 0.2191 16 6 1.9335 -10.1454 0.8593 17 6 3.0910 -10.0325 1.6269 18 6 3.7284 -8.8366 1.7564 19 6 3.2126 -7.7008 1.1089 20 6 3.8436 -6.4500 1.2193 21 6 3.4657 -0.9487 1.3229 22 7 2.0226 -0.7010 1.1936 23 6 1.1537 -1.1161 2.1672 24 1 0.1392 -1.3809 1.9083 25 6 1.5769 -1.1968 3.4867 26 7 2.7217 -0.6549 3.8450 27 14 0.5218 -2.0744 4.7540 28 1 0.9006 -3.5094 4.8052 29 1 0.7353 -1.4582 6.0881 30 1 -0.9092 -1.9534 4.3761 31 1 -0.3633 -1.0277 0.0051 32 1 -0.3633 0.5181 0.8874 33 1 -0.3633 0.5094 -0.8925 34 1 1.7660 -0.1640 -2.1370 35 1 1.6030 -1.7237 -1.2935 36 1 4.0061 0.1489 -1.0992 37 1 3.9377 -1.3422 -2.0686 38 1 2.5325 -3.1210 -0.5394 39 1 1.6663 -4.7252 -0.7220 40 1 0.5081 -9.1714 -0.3710 41 1 1.4459 -11.1051 0.7718 42 1 3.4879 -10.9049 2.1247 43 1 4.6278 -8.7620 2.3497 44 1 4.7423 -6.3299 1.8060 45 1 3.6530 -1.5748 2.1954 46 1 3.9909 0.0001 1.4320 47 1 3.0173 -0.7109 4.7671 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071849987.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:57:43 Heat of formation + Delta-G solvation = 21.207857 kcal Electronic energy + Delta-G solvation = -29864.692405 eV Core-core repulsion = 26011.844275 eV Total energy + Delta-G solvation = -3852.848130 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.03686 -40.84513 -39.19724 -37.90074 -35.84939 -34.54114 -34.50640 -32.73669 -31.74511 -31.21694 -31.00278 -27.89778 -26.86855 -25.61381 -25.12315 -23.86424 -23.12637 -22.51242 -21.99412 -20.41658 -19.48404 -18.91615 -18.35895 -17.96156 -17.18671 -16.86911 -16.45443 -16.09048 -15.77908 -15.60804 -15.49501 -15.25174 -15.22170 -14.93212 -14.66945 -14.47526 -14.40553 -14.15695 -13.99869 -13.63324 -13.02681 -12.85244 -12.78415 -12.75094 -12.62920 -12.55831 -12.44300 -12.40420 -12.11327 -12.06454 -11.62092 -11.56287 -11.32891 -11.16103 -11.04323 -10.58724 -10.51259 -10.07013 -9.81134 -9.31684 -8.55422 -7.81209 -5.27838 -0.83507 -0.44391 0.82243 1.37458 1.40332 1.46653 1.52956 2.13514 2.33016 2.48594 3.03951 3.13498 3.34544 3.52538 3.59572 3.64624 3.70030 3.77962 3.94881 4.05320 4.11702 4.19628 4.20460 4.31464 4.40378 4.51198 4.65690 4.67528 4.74318 4.82127 4.83732 4.92688 4.98671 5.03439 5.06468 5.09951 5.13899 5.28396 5.32617 5.34624 5.39782 5.43705 5.58413 5.62570 5.68095 5.74358 5.78737 5.83163 6.45836 6.58088 6.71277 7.19903 7.24696 7.94028 8.43938 9.23214 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011404 B = 0.003885 C = 0.003480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2454.777670 B = 7205.170692 C = 8044.567538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.154 3.846 3 H 0.015 0.985 4 C -0.121 4.121 5 C -0.111 4.111 6 C 0.127 3.873 7 H 0.068 0.932 8 N -0.682 5.682 9 C 0.558 3.442 10 O -0.584 6.584 11 C -0.203 4.203 12 C 0.162 3.838 13 N -0.489 5.489 14 C 0.116 3.884 15 C -0.116 4.116 16 C -0.078 4.078 17 C -0.112 4.112 18 C -0.098 4.098 19 C -0.127 4.127 20 C 0.001 3.999 21 C 0.170 3.830 22 N -0.595 5.595 23 C -0.233 4.233 24 H 0.076 0.924 25 C -0.053 4.053 26 N -0.936 5.936 27 Si 0.946 3.054 28 H -0.300 1.300 29 H -0.298 1.298 30 H -0.262 1.262 31 H 0.051 0.949 32 H 0.034 0.966 33 H 0.076 0.924 34 H 0.092 0.908 35 H 0.063 0.937 36 H 0.075 0.925 37 H 0.086 0.914 38 H 0.406 0.594 39 H 0.178 0.822 40 H 0.148 0.852 41 H 0.169 0.831 42 H 0.166 0.834 43 H 0.150 0.850 44 H 0.150 0.850 45 H 0.051 0.949 46 H -0.002 1.002 47 H 0.242 0.758 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.030 -16.196 -12.577 20.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.048 3.952 3 H 0.033 0.967 4 C -0.159 4.159 5 C -0.148 4.148 6 C 0.021 3.979 7 H 0.086 0.914 8 N -0.333 5.333 9 C 0.345 3.655 10 O -0.466 6.466 11 C -0.208 4.208 12 C -0.012 4.012 13 N -0.196 5.196 14 C -0.004 4.004 15 C -0.134 4.134 16 C -0.097 4.097 17 C -0.130 4.130 18 C -0.116 4.116 19 C -0.129 4.129 20 C -0.025 4.025 21 C 0.043 3.957 22 N -0.319 5.319 23 C -0.363 4.363 24 H 0.093 0.907 25 C -0.247 4.247 26 N -0.584 5.584 27 Si 0.776 3.224 28 H -0.229 1.229 29 H -0.225 1.225 30 H -0.187 1.187 31 H 0.070 0.930 32 H 0.053 0.947 33 H 0.094 0.906 34 H 0.110 0.890 35 H 0.081 0.919 36 H 0.093 0.907 37 H 0.105 0.895 38 H 0.244 0.756 39 H 0.194 0.806 40 H 0.166 0.834 41 H 0.187 0.813 42 H 0.183 0.817 43 H 0.167 0.833 44 H 0.167 0.833 45 H 0.070 0.930 46 H 0.016 0.984 47 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -1.087 -16.224 -12.478 20.496 hybrid contribution 0.312 0.393 1.831 1.899 sum -0.775 -15.830 -10.646 19.093 Atomic orbital electron populations 1.21730 0.94762 1.01342 1.00802 1.20778 0.94115 0.93275 0.86987 0.96697 1.21979 0.94716 1.01092 0.98163 1.21678 0.97312 0.99959 0.95894 1.21574 0.96448 0.81985 0.97905 0.91396 1.45657 1.29421 1.07869 1.50308 1.18250 0.83634 0.84748 0.78832 1.90723 1.27184 1.85715 1.42951 1.20962 1.00213 0.94502 1.05129 1.23202 0.89709 0.95408 0.92867 1.67971 1.31444 0.99085 1.21136 1.19498 0.92585 0.94234 0.94113 1.21085 1.01065 0.89839 1.01435 1.21461 0.95030 0.99570 0.93678 1.21411 0.95251 0.98176 0.98132 1.21385 1.00653 0.91504 0.98103 1.19042 0.97398 0.95013 1.01437 1.22112 0.97592 0.90613 0.92203 1.20909 0.84103 0.95441 0.95238 1.44268 1.02225 1.65333 1.20049 1.19422 0.95219 1.35302 0.86391 0.90659 1.25701 0.98601 1.01475 0.98972 1.70131 1.23564 1.48353 1.16306 0.85571 0.79712 0.77696 0.79430 1.22854 1.22530 1.18662 0.93029 0.94723 0.90562 0.88994 0.91883 0.90650 0.89503 0.75608 0.80564 0.83377 0.81347 0.81684 0.83251 0.83274 0.93032 0.98389 0.94886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.30 7.95 71.98 0.57 -3.73 16 2 C 0.15 5.69 3.50 44.97 0.16 5.85 16 3 H 0.02 0.60 8.14 -2.38 -0.02 0.58 16 4 C -0.12 -3.30 5.21 30.67 0.16 -3.14 16 5 C -0.11 -3.11 5.59 30.62 0.17 -2.94 16 6 C 0.13 4.78 2.81 45.07 0.13 4.91 16 7 H 0.07 2.69 7.58 -2.39 -0.02 2.67 16 8 N -0.68 -24.13 4.87 -445.11 -2.17 -26.30 16 9 C 0.56 22.04 7.74 86.76 0.67 22.71 16 10 O -0.58 -27.55 16.05 -3.91 -0.06 -27.61 16 11 C -0.20 -6.88 5.89 -20.00 -0.12 -7.00 16 12 C 0.16 4.85 10.68 85.42 0.91 5.76 16 13 N -0.49 -14.61 10.30 -187.68 -1.93 -16.54 16 14 C 0.12 3.20 6.61 40.27 0.27 3.46 16 15 C -0.12 -2.34 9.97 22.34 0.22 -2.11 16 16 C -0.08 -1.08 9.94 22.05 0.22 -0.86 16 17 C -0.11 -1.57 9.96 22.05 0.22 -1.35 16 18 C -0.10 -1.92 9.77 22.34 0.22 -1.70 16 19 C -0.13 -3.43 5.74 -21.28 -0.12 -3.56 16 20 C 0.00 0.05 9.46 23.01 0.22 0.26 16 21 C 0.17 8.35 4.88 86.35 0.42 8.78 16 22 N -0.59 -28.19 2.91 -675.05 -1.97 -30.16 16 23 C -0.23 -12.36 8.60 84.03 0.72 -11.63 16 24 H 0.08 3.84 6.20 -2.91 -0.02 3.83 16 25 C -0.05 -3.02 5.03 84.86 0.43 -2.60 16 26 N -0.94 -57.83 11.01 21.65 0.24 -57.59 16 27 Si 0.95 47.10 29.57 68.60 2.03 49.13 16 28 H -0.30 -15.34 7.11 99.48 0.71 -14.64 16 29 H -0.30 -15.08 7.11 99.48 0.71 -14.38 16 30 H -0.26 -12.16 7.11 99.48 0.71 -11.45 16 31 H 0.05 1.72 7.40 -2.38 -0.02 1.70 16 32 H 0.03 1.31 7.67 -2.39 -0.02 1.30 16 33 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 34 H 0.09 1.94 8.14 -2.38 -0.02 1.92 16 35 H 0.06 1.65 6.40 -2.39 -0.02 1.63 16 36 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 37 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 38 H 0.41 12.15 4.80 -92.70 -0.44 11.71 16 39 H 0.18 4.38 6.37 -2.91 -0.02 4.36 16 40 H 0.15 2.53 8.06 -2.91 -0.02 2.51 16 41 H 0.17 1.06 8.06 -2.91 -0.02 1.03 16 42 H 0.17 1.13 8.06 -2.91 -0.02 1.10 16 43 H 0.15 2.32 8.06 -2.91 -0.02 2.30 16 44 H 0.15 4.58 7.70 -2.91 -0.02 4.55 16 45 H 0.05 3.06 6.02 -2.38 -0.01 3.05 16 46 H 0.00 -0.10 8.14 -2.39 -0.02 -0.12 16 47 H 0.24 14.85 8.31 -92.71 -0.77 14.08 16 Total: -1.00 -76.41 374.88 2.16 -74.26 By element: Atomic # 1 Polarization: 23.15 SS G_CDS: 0.55 Total: 23.71 kcal Atomic # 6 Polarization: 5.64 SS G_CDS: 5.47 Total: 11.10 kcal Atomic # 7 Polarization: -124.76 SS G_CDS: -5.83 Total: -130.59 kcal Atomic # 8 Polarization: -27.55 SS G_CDS: -0.06 Total: -27.61 kcal Atomic # 14 Polarization: 47.10 SS G_CDS: 2.03 Total: 49.13 kcal Total: -76.41 2.16 -74.26 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071849987.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.464 kcal (2) G-P(sol) polarization free energy of solvation -76.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.256 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds