Wall clock time and date at job start Tue Mar 31 2020 23:57:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08999 * 109.59085 * 2 1 4 4 C 1.53193 * 109.58433 * 120.28086 * 2 1 3 5 5 C 1.53041 * 109.31300 * 174.56357 * 4 2 1 6 6 C 1.53044 * 109.53884 * 298.63377 * 5 4 2 7 7 H 1.08998 * 109.49761 * 181.31591 * 6 5 4 8 8 N 1.46497 * 109.49704 * 301.41588 * 6 5 4 9 9 C 1.34771 * 119.99896 * 204.99787 * 8 6 5 10 10 O 1.21569 * 120.00165 * 0.02562 * 9 8 6 11 11 C 1.47763 * 120.00257 * 179.97438 * 9 8 6 12 12 C 1.40594 * 120.26212 * 359.72797 * 11 9 8 13 13 N 1.30808 * 121.53231 * 179.70789 * 12 11 9 14 14 C 1.33813 * 121.71802 * 0.55008 * 13 12 11 15 15 C 1.40523 * 120.81284 * 179.70198 * 14 13 12 16 16 C 1.36130 * 119.81955 * 180.02562 * 15 14 13 17 17 C 1.39337 * 121.08398 * 359.97438 * 16 15 14 18 18 C 1.36146 * 120.83585 * 359.97438 * 17 16 15 19 19 C 1.40533 * 119.62059 * 359.97438 * 18 17 16 20 20 C 1.39009 * 120.26836 * 180.02562 * 11 9 8 21 21 C 1.53191 * 109.30755 * 61.36274 * 6 5 4 22 22 N 1.46917 * 109.70402 * 239.63746 * 2 1 3 23 23 C 1.36945 * 120.63269 * 6.51524 * 22 2 1 24 24 H 1.07999 * 119.99653 * 330.19743 * 23 22 2 25 25 C 1.38810 * 120.00178 * 150.19385 * 23 22 2 26 26 N 1.31620 * 119.99942 * 344.48884 * 25 23 22 27 27 Si 1.86795 * 119.99872 * 164.48482 * 25 23 22 28 28 H 1.48497 * 109.47152 * 60.00445 * 27 25 23 29 29 H 1.48507 * 109.47028 * 180.02562 * 27 25 23 30 30 H 1.48494 * 109.47373 * 300.00024 * 27 25 23 31 31 H 1.09000 * 109.47021 * 300.00230 * 1 2 3 32 32 H 1.08996 * 109.46860 * 60.00275 * 1 2 3 33 33 H 1.08996 * 109.46920 * 180.02562 * 1 2 3 34 34 H 1.09000 * 109.50293 * 294.51312 * 4 2 1 35 35 H 1.08997 * 109.49933 * 54.61186 * 4 2 1 36 36 H 1.09001 * 109.45644 * 58.65504 * 5 4 2 37 37 H 1.09001 * 109.46009 * 178.61472 * 5 4 2 38 38 H 0.96997 * 120.00285 * 24.99505 * 8 6 5 39 39 H 1.08000 * 119.23802 * 359.97438 * 12 11 9 40 40 H 1.08006 * 120.08939 * 0.07065 * 15 14 13 41 41 H 1.08000 * 119.46289 * 179.97438 * 16 15 14 42 42 H 1.07998 * 119.58460 * 180.02562 * 17 16 15 43 43 H 1.08004 * 120.18850 * 179.97438 * 18 17 16 44 44 H 1.08002 * 121.01939 * 359.97438 * 20 11 9 45 45 H 1.09006 * 109.58889 * 65.15964 * 21 6 5 46 46 H 1.09004 * 109.58178 * 185.43292 * 21 6 5 47 47 H 0.97005 * 119.99905 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8955 1.0269 0.0000 4 6 2.0436 -0.7278 1.2464 5 6 3.5678 -0.8434 1.1730 6 6 3.9604 -1.6610 -0.0597 7 1 5.0449 -1.7627 -0.0986 8 7 3.3465 -2.9888 0.0184 9 6 3.9059 -4.0290 -0.6308 10 8 4.9201 -3.8656 -1.2808 11 6 3.2871 -5.3685 -0.5515 12 6 2.1179 -5.5653 0.2042 13 7 1.5463 -6.7390 0.2869 14 6 2.0502 -7.8122 -0.3335 15 6 1.4238 -9.0656 -0.2266 16 6 1.9542 -10.1441 -0.8658 17 6 3.1138 -10.0291 -1.6298 18 6 3.7489 -8.8317 -1.7583 19 6 3.2288 -7.6968 -1.1130 20 6 3.8596 -6.4454 -1.2185 21 6 3.4685 -0.9437 -1.3209 22 7 2.0254 -0.6991 -1.1934 23 6 1.1585 -1.1154 -2.1684 24 1 0.1447 -1.3842 -1.9107 25 6 1.5827 -1.1917 -3.4879 26 7 2.6925 -0.5888 -3.8583 27 14 0.5784 -2.1500 -4.7379 28 1 -0.7832 -1.5650 -4.8321 29 1 1.2412 -2.0786 -6.0649 30 1 0.4792 -3.5686 -4.3104 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0276 0.0005 34 1 1.7639 -0.1654 2.1372 35 1 1.6049 -1.7245 1.2923 36 1 4.0045 0.1528 1.1022 37 1 3.9380 -1.3391 2.0704 38 1 2.5375 -3.1194 0.5374 39 1 1.6792 -4.7271 0.7251 40 1 0.5236 -9.1727 0.3605 41 1 1.4683 -11.1047 -0.7794 42 1 3.5134 -10.9006 -2.1269 43 1 4.6473 -8.7546 -2.3527 44 1 4.7599 -6.3235 -1.8025 45 1 3.9921 0.0062 -1.4287 46 1 3.6599 -1.5675 -2.1940 47 1 2.9888 -0.6418 -4.7805 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071849992.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:57:51 Heat of formation + Delta-G solvation = 40.579281 kcal Electronic energy + Delta-G solvation = -29864.099832 eV Core-core repulsion = 26012.091710 eV Total energy + Delta-G solvation = -3852.008122 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.96558 -39.44706 -37.71307 -36.86391 -34.21599 -33.45672 -32.75774 -31.43485 -30.21538 -30.06361 -29.77164 -26.31964 -25.12037 -24.42971 -24.10556 -22.19778 -22.17963 -21.21778 -20.44243 -18.81813 -18.34609 -17.83807 -17.10551 -16.30310 -15.86207 -15.38187 -15.00494 -14.70787 -14.60883 -14.30511 -14.12583 -13.96418 -13.82479 -13.59737 -13.46047 -13.21863 -13.01419 -12.82299 -12.49781 -11.99113 -11.92607 -11.81753 -11.62545 -11.23777 -11.16332 -10.97176 -10.89046 -10.69970 -10.55387 -10.39435 -10.34170 -9.99214 -9.93135 -9.53578 -9.47394 -9.28870 -8.91285 -8.47576 -8.44082 -8.34159 -6.59092 -5.74698 -3.18925 0.18344 0.55342 1.80303 2.57478 3.38891 3.44033 3.45566 3.46668 3.61577 4.09103 4.13389 4.46021 4.50961 4.62620 4.75916 4.76529 4.95686 4.99142 5.13982 5.29513 5.30846 5.35577 5.42424 5.49825 5.58924 5.64378 5.76817 5.81580 5.94168 5.99827 6.09871 6.13360 6.17433 6.23672 6.32231 6.34950 6.37543 6.43679 6.50485 6.59384 6.65053 6.66391 6.86774 7.05010 7.11437 7.35988 7.67683 7.77714 7.84504 8.00720 8.49800 8.66816 9.24245 9.88592 10.44763 11.33366 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011454 B = 0.003890 C = 0.003486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2443.971588 B = 7195.612196 C = 8029.725700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.165 3.835 3 H 0.025 0.975 4 C -0.131 4.131 5 C -0.119 4.119 6 C 0.118 3.882 7 H 0.078 0.922 8 N -0.691 5.691 9 C 0.562 3.438 10 O -0.541 6.541 11 C -0.178 4.178 12 C 0.167 3.833 13 N -0.478 5.478 14 C 0.138 3.862 15 C -0.098 4.098 16 C -0.097 4.097 17 C -0.125 4.125 18 C -0.085 4.085 19 C -0.112 4.112 20 C 0.006 3.994 21 C 0.163 3.837 22 N -0.582 5.582 23 C -0.252 4.252 24 H 0.067 0.933 25 C 0.009 3.991 26 N -0.898 5.898 27 Si 0.894 3.106 28 H -0.283 1.283 29 H -0.291 1.291 30 H -0.286 1.286 31 H 0.037 0.963 32 H 0.060 0.940 33 H 0.051 0.949 34 H 0.054 0.946 35 H 0.054 0.946 36 H 0.072 0.928 37 H 0.052 0.948 38 H 0.394 0.606 39 H 0.161 0.839 40 H 0.136 0.864 41 H 0.129 0.871 42 H 0.128 0.872 43 H 0.133 0.867 44 H 0.153 0.847 45 H 0.026 0.974 46 H 0.095 0.905 47 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.821 -13.612 10.224 17.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.058 3.942 3 H 0.043 0.957 4 C -0.170 4.170 5 C -0.157 4.157 6 C 0.013 3.987 7 H 0.096 0.904 8 N -0.341 5.341 9 C 0.347 3.653 10 O -0.419 6.419 11 C -0.184 4.184 12 C -0.007 4.007 13 N -0.186 5.186 14 C 0.017 3.983 15 C -0.116 4.116 16 C -0.117 4.117 17 C -0.143 4.143 18 C -0.103 4.103 19 C -0.114 4.114 20 C -0.021 4.021 21 C 0.036 3.964 22 N -0.305 5.305 23 C -0.381 4.381 24 H 0.085 0.915 25 C -0.190 4.190 26 N -0.542 5.542 27 Si 0.724 3.276 28 H -0.209 1.209 29 H -0.217 1.217 30 H -0.212 1.212 31 H 0.056 0.944 32 H 0.079 0.921 33 H 0.070 0.930 34 H 0.073 0.927 35 H 0.072 0.928 36 H 0.090 0.910 37 H 0.071 0.929 38 H 0.230 0.770 39 H 0.178 0.822 40 H 0.154 0.846 41 H 0.147 0.853 42 H 0.146 0.854 43 H 0.151 0.849 44 H 0.171 0.829 45 H 0.044 0.956 46 H 0.113 0.887 47 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 0.825 -13.638 10.059 16.966 hybrid contribution -0.195 -0.333 -1.096 1.162 sum 0.630 -13.971 8.963 16.611 Atomic orbital electron populations 1.21791 0.96086 1.01246 1.00194 1.20462 0.92902 0.93656 0.87135 0.95743 1.22077 0.95110 1.00650 0.99205 1.21700 0.97048 1.00223 0.96731 1.21838 0.97048 0.81408 0.98453 0.90427 1.45765 1.29061 1.08588 1.50731 1.17797 0.84159 0.83596 0.79761 1.90760 1.25109 1.84864 1.41181 1.21122 0.98848 0.95640 1.02749 1.23065 0.90120 0.94703 0.92771 1.67946 1.31131 0.98840 1.20652 1.19013 0.92032 0.93357 0.93870 1.20816 1.00255 0.90345 1.00193 1.20943 0.95776 0.98774 0.96159 1.20911 0.96034 0.97831 0.99503 1.21080 0.99650 0.91665 0.97939 1.18845 0.97150 0.94755 1.00636 1.21967 0.97613 0.89864 0.92634 1.21163 0.83834 0.97086 0.94328 1.44025 1.02610 1.64788 1.19118 1.19021 0.95095 1.37988 0.86026 0.91523 1.25039 0.97719 0.99334 0.96953 1.69976 1.23947 1.43446 1.16827 0.86511 0.79669 0.80365 0.81072 1.20903 1.21655 1.21229 0.94408 0.92051 0.92951 0.92739 0.92780 0.90967 0.92937 0.76983 0.82164 0.84610 0.85272 0.85426 0.84928 0.82950 0.95558 0.88687 0.93630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.41 7.95 37.16 0.30 -2.12 16 2 C 0.17 3.17 3.49 -67.60 -0.24 2.94 16 3 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 4 C -0.13 -2.01 5.21 -26.61 -0.14 -2.15 16 5 C -0.12 -1.80 5.59 -26.69 -0.15 -1.95 16 6 C 0.12 2.18 2.81 -67.81 -0.19 1.99 16 7 H 0.08 1.47 7.58 -51.93 -0.39 1.07 16 8 N -0.69 -12.06 4.87 -54.66 -0.27 -12.33 16 9 C 0.56 10.55 7.74 -12.37 -0.10 10.46 16 10 O -0.54 -11.87 16.04 5.30 0.09 -11.79 16 11 C -0.18 -2.91 5.89 -104.83 -0.62 -3.53 16 12 C 0.17 2.50 10.68 -17.10 -0.18 2.31 16 13 N -0.48 -7.27 10.30 -10.67 -0.11 -7.38 16 14 C 0.14 1.97 6.61 -84.79 -0.56 1.41 16 15 C -0.10 -1.11 9.97 -39.48 -0.39 -1.50 16 16 C -0.10 -0.88 9.94 -39.93 -0.40 -1.27 16 17 C -0.12 -1.13 9.96 -39.92 -0.40 -1.52 16 18 C -0.08 -0.91 9.77 -39.47 -0.39 -1.30 16 19 C -0.11 -1.53 5.74 -106.81 -0.61 -2.15 16 20 C 0.01 0.09 9.46 -38.43 -0.36 -0.27 16 21 C 0.16 3.79 4.88 -3.71 -0.02 3.77 16 22 N -0.58 -13.56 2.90 -164.77 -0.48 -14.04 16 23 C -0.25 -6.58 8.58 -15.06 -0.13 -6.70 16 24 H 0.07 1.71 6.25 -52.49 -0.33 1.38 16 25 C 0.01 0.24 4.94 -17.43 -0.09 0.16 16 26 N -0.90 -26.23 11.23 55.49 0.62 -25.60 16 27 Si 0.89 22.20 29.58 -169.99 -5.03 17.17 16 28 H -0.28 -6.88 7.11 56.52 0.40 -6.47 16 29 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 30 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 31 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.06 1.21 7.66 -51.93 -0.40 0.81 16 33 H 0.05 0.93 7.42 -51.93 -0.39 0.55 16 34 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.05 0.81 6.40 -51.93 -0.33 0.47 16 36 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 37 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 38 H 0.39 6.08 4.80 -40.82 -0.20 5.88 16 39 H 0.16 2.04 6.37 -52.49 -0.33 1.71 16 40 H 0.14 1.34 8.06 -52.48 -0.42 0.91 16 41 H 0.13 0.79 8.06 -52.49 -0.42 0.36 16 42 H 0.13 0.79 8.06 -52.49 -0.42 0.37 16 43 H 0.13 1.14 8.06 -52.48 -0.42 0.72 16 44 H 0.15 2.16 7.70 -52.49 -0.40 1.76 16 45 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 46 H 0.09 2.63 6.15 -51.93 -0.32 2.31 16 47 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 375.18 15.07 5.65 5.65 Total: -1.00 -32.35 375.18 -10.63 -42.99 By element: Atomic # 1 Polarization: 13.22 SS G_CDS: -6.45 Total: 6.77 kcal Atomic # 6 Polarization: 3.23 SS G_CDS: -4.66 Total: -1.43 kcal Atomic # 7 Polarization: -59.13 SS G_CDS: -0.23 Total: -59.36 kcal Atomic # 8 Polarization: -11.87 SS G_CDS: 0.09 Total: -11.79 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.03 Total: 17.17 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -32.35 -10.63 -42.99 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071849992.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.565 kcal (2) G-P(sol) polarization free energy of solvation -32.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.986 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds