Wall clock time and date at job start Tue Mar 31 2020 23:57:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08999 * 109.59085 * 2 1 4 4 C 1.53193 * 109.58433 * 120.28086 * 2 1 3 5 5 C 1.53041 * 109.31300 * 174.56357 * 4 2 1 6 6 C 1.53044 * 109.53884 * 298.63377 * 5 4 2 7 7 H 1.08998 * 109.49761 * 181.31591 * 6 5 4 8 8 N 1.46497 * 109.49704 * 301.41588 * 6 5 4 9 9 C 1.34771 * 119.99896 * 204.99787 * 8 6 5 10 10 O 1.21569 * 120.00165 * 0.02562 * 9 8 6 11 11 C 1.47763 * 120.00257 * 179.97438 * 9 8 6 12 12 C 1.40594 * 120.26212 * 359.72797 * 11 9 8 13 13 N 1.30808 * 121.53231 * 179.70789 * 12 11 9 14 14 C 1.33813 * 121.71802 * 0.55008 * 13 12 11 15 15 C 1.40523 * 120.81284 * 179.70198 * 14 13 12 16 16 C 1.36130 * 119.81955 * 180.02562 * 15 14 13 17 17 C 1.39337 * 121.08398 * 359.97438 * 16 15 14 18 18 C 1.36146 * 120.83585 * 359.97438 * 17 16 15 19 19 C 1.40533 * 119.62059 * 359.97438 * 18 17 16 20 20 C 1.39009 * 120.26836 * 180.02562 * 11 9 8 21 21 C 1.53191 * 109.30755 * 61.36274 * 6 5 4 22 22 N 1.46917 * 109.70402 * 239.63746 * 2 1 3 23 23 C 1.36945 * 120.63269 * 6.51524 * 22 2 1 24 24 H 1.07999 * 119.99653 * 330.19743 * 23 22 2 25 25 C 1.38810 * 120.00178 * 150.19385 * 23 22 2 26 26 N 1.31620 * 119.99942 * 344.48884 * 25 23 22 27 27 Si 1.86795 * 119.99872 * 164.48482 * 25 23 22 28 28 H 1.48497 * 109.47152 * 60.00445 * 27 25 23 29 29 H 1.48507 * 109.47028 * 180.02562 * 27 25 23 30 30 H 1.48494 * 109.47373 * 300.00024 * 27 25 23 31 31 H 1.09000 * 109.47021 * 300.00230 * 1 2 3 32 32 H 1.08996 * 109.46860 * 60.00275 * 1 2 3 33 33 H 1.08996 * 109.46920 * 180.02562 * 1 2 3 34 34 H 1.09000 * 109.50293 * 294.51312 * 4 2 1 35 35 H 1.08997 * 109.49933 * 54.61186 * 4 2 1 36 36 H 1.09001 * 109.45644 * 58.65504 * 5 4 2 37 37 H 1.09001 * 109.46009 * 178.61472 * 5 4 2 38 38 H 0.96997 * 120.00285 * 24.99505 * 8 6 5 39 39 H 1.08000 * 119.23802 * 359.97438 * 12 11 9 40 40 H 1.08006 * 120.08939 * 0.07065 * 15 14 13 41 41 H 1.08000 * 119.46289 * 179.97438 * 16 15 14 42 42 H 1.07998 * 119.58460 * 180.02562 * 17 16 15 43 43 H 1.08004 * 120.18850 * 179.97438 * 18 17 16 44 44 H 1.08002 * 121.01939 * 359.97438 * 20 11 9 45 45 H 1.09006 * 109.58889 * 65.15964 * 21 6 5 46 46 H 1.09004 * 109.58178 * 185.43292 * 21 6 5 47 47 H 0.97005 * 119.99905 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8955 1.0269 0.0000 4 6 2.0436 -0.7278 1.2464 5 6 3.5678 -0.8434 1.1730 6 6 3.9604 -1.6610 -0.0597 7 1 5.0449 -1.7627 -0.0986 8 7 3.3465 -2.9888 0.0184 9 6 3.9059 -4.0290 -0.6308 10 8 4.9201 -3.8656 -1.2808 11 6 3.2871 -5.3685 -0.5515 12 6 2.1179 -5.5653 0.2042 13 7 1.5463 -6.7390 0.2869 14 6 2.0502 -7.8122 -0.3335 15 6 1.4238 -9.0656 -0.2266 16 6 1.9542 -10.1441 -0.8658 17 6 3.1138 -10.0291 -1.6298 18 6 3.7489 -8.8317 -1.7583 19 6 3.2288 -7.6968 -1.1130 20 6 3.8596 -6.4454 -1.2185 21 6 3.4685 -0.9437 -1.3209 22 7 2.0254 -0.6991 -1.1934 23 6 1.1585 -1.1154 -2.1684 24 1 0.1447 -1.3842 -1.9107 25 6 1.5827 -1.1917 -3.4879 26 7 2.6925 -0.5888 -3.8583 27 14 0.5784 -2.1500 -4.7379 28 1 -0.7832 -1.5650 -4.8321 29 1 1.2412 -2.0786 -6.0649 30 1 0.4792 -3.5686 -4.3104 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0276 0.0005 34 1 1.7639 -0.1654 2.1372 35 1 1.6049 -1.7245 1.2923 36 1 4.0045 0.1528 1.1022 37 1 3.9380 -1.3391 2.0704 38 1 2.5375 -3.1194 0.5374 39 1 1.6792 -4.7271 0.7251 40 1 0.5236 -9.1727 0.3605 41 1 1.4683 -11.1047 -0.7794 42 1 3.5134 -10.9006 -2.1269 43 1 4.6473 -8.7546 -2.3527 44 1 4.7599 -6.3235 -1.8025 45 1 3.9921 0.0062 -1.4287 46 1 3.6599 -1.5675 -2.1940 47 1 2.9888 -0.6418 -4.7805 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071849992.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:57:50 Heat of formation + Delta-G solvation = 20.718385 kcal Electronic energy + Delta-G solvation = -29864.961065 eV Core-core repulsion = 26012.091710 eV Total energy + Delta-G solvation = -3852.869355 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.03902 -40.85088 -39.20117 -37.90237 -35.85043 -34.53806 -34.50672 -32.73834 -31.77003 -31.22112 -31.00529 -27.90081 -26.86235 -25.61728 -25.12547 -23.88253 -23.12752 -22.51531 -21.99506 -20.42058 -19.48705 -18.91802 -18.36245 -17.96100 -17.17604 -16.86975 -16.45739 -16.09899 -15.79652 -15.61197 -15.50243 -15.25726 -15.22704 -14.93398 -14.67452 -14.47701 -14.40940 -14.15891 -14.00010 -13.64595 -12.98898 -12.88720 -12.78490 -12.75024 -12.61725 -12.57785 -12.44451 -12.41338 -12.14654 -12.08885 -11.62296 -11.56649 -11.33216 -11.16072 -11.04620 -10.58294 -10.50886 -10.07610 -9.81462 -9.31797 -8.56027 -7.82903 -5.27494 -0.83641 -0.44595 0.82113 1.37279 1.40936 1.44870 1.52638 2.12980 2.32577 2.48443 3.03860 3.13261 3.32995 3.52450 3.59354 3.64220 3.69755 3.77808 3.94525 4.04770 4.11475 4.19556 4.20190 4.31322 4.40273 4.50265 4.65376 4.67393 4.73922 4.81873 4.83365 4.92526 4.97750 5.03304 5.06088 5.09237 5.13876 5.28231 5.32485 5.34101 5.39625 5.43590 5.58320 5.61911 5.66584 5.74088 5.75019 5.83062 6.44542 6.57480 6.71151 7.19184 7.23954 7.93628 8.44016 9.22161 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011454 B = 0.003890 C = 0.003486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2443.971588 B = 7195.612196 C = 8029.725700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.154 3.846 3 H 0.015 0.985 4 C -0.121 4.121 5 C -0.111 4.111 6 C 0.127 3.873 7 H 0.069 0.931 8 N -0.682 5.682 9 C 0.558 3.442 10 O -0.584 6.584 11 C -0.203 4.203 12 C 0.162 3.838 13 N -0.489 5.489 14 C 0.116 3.884 15 C -0.116 4.116 16 C -0.078 4.078 17 C -0.112 4.112 18 C -0.098 4.098 19 C -0.127 4.127 20 C 0.002 3.998 21 C 0.172 3.828 22 N -0.594 5.594 23 C -0.236 4.236 24 H 0.075 0.925 25 C -0.050 4.050 26 N -0.934 5.934 27 Si 0.944 3.056 28 H -0.270 1.270 29 H -0.301 1.301 30 H -0.290 1.290 31 H 0.076 0.924 32 H 0.033 0.967 33 H 0.051 0.949 34 H 0.092 0.908 35 H 0.063 0.937 36 H 0.075 0.925 37 H 0.087 0.913 38 H 0.406 0.594 39 H 0.177 0.823 40 H 0.148 0.852 41 H 0.169 0.831 42 H 0.166 0.834 43 H 0.150 0.850 44 H 0.150 0.850 45 H -0.001 1.001 46 H 0.045 0.955 47 H 0.242 0.758 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.795 -16.366 12.581 20.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.049 3.951 3 H 0.032 0.968 4 C -0.159 4.159 5 C -0.148 4.148 6 C 0.021 3.979 7 H 0.087 0.913 8 N -0.333 5.333 9 C 0.346 3.654 10 O -0.466 6.466 11 C -0.208 4.208 12 C -0.012 4.012 13 N -0.197 5.197 14 C -0.005 4.005 15 C -0.135 4.135 16 C -0.097 4.097 17 C -0.130 4.130 18 C -0.116 4.116 19 C -0.129 4.129 20 C -0.025 4.025 21 C 0.045 3.955 22 N -0.318 5.318 23 C -0.367 4.367 24 H 0.092 0.908 25 C -0.245 4.245 26 N -0.581 5.581 27 Si 0.774 3.226 28 H -0.195 1.195 29 H -0.228 1.228 30 H -0.217 1.217 31 H 0.094 0.906 32 H 0.052 0.948 33 H 0.070 0.930 34 H 0.110 0.890 35 H 0.081 0.919 36 H 0.094 0.906 37 H 0.106 0.894 38 H 0.244 0.756 39 H 0.194 0.806 40 H 0.166 0.834 41 H 0.186 0.814 42 H 0.183 0.817 43 H 0.168 0.832 44 H 0.168 0.832 45 H 0.017 0.983 46 H 0.064 0.936 47 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -0.842 -16.394 12.472 20.616 hybrid contribution 0.292 0.368 -1.820 1.879 sum -0.550 -16.026 10.652 19.251 Atomic orbital electron populations 1.21724 0.94763 1.01346 1.00781 1.20776 0.94106 0.93270 0.86997 0.96753 1.21977 0.94727 1.01095 0.98150 1.21679 0.97288 0.99987 0.95887 1.21564 0.96522 0.81940 0.97842 0.91284 1.45657 1.29330 1.07853 1.50424 1.18249 0.83627 0.84757 0.78812 1.90724 1.27095 1.85702 1.43046 1.20962 1.00228 0.94498 1.05143 1.23204 0.89722 0.95390 0.92899 1.67972 1.31376 0.99142 1.21185 1.19501 0.92599 0.94223 0.94130 1.21085 1.01076 0.89853 1.01439 1.21458 0.95021 0.99581 0.93675 1.21414 0.95238 0.98180 0.98141 1.21385 1.00644 0.91482 0.98105 1.19045 0.97380 0.95032 1.01439 1.22118 0.97586 0.90586 0.92201 1.20837 0.84208 0.95354 0.95070 1.44235 1.02150 1.65475 1.19915 1.19350 0.95451 1.35493 0.86365 0.90787 1.25664 0.98889 1.01135 0.98833 1.70142 1.25862 1.45893 1.16227 0.85682 0.78997 0.79021 0.78892 1.19533 1.22783 1.21653 0.90556 0.94769 0.93006 0.88977 0.91875 0.90624 0.89446 0.75592 0.80578 0.83403 0.81350 0.81673 0.83212 0.83205 0.98294 0.93632 0.94840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.31 7.95 71.98 0.57 -3.74 16 2 C 0.15 5.70 3.49 44.98 0.16 5.86 16 3 H 0.01 0.58 8.14 -2.39 -0.02 0.56 16 4 C -0.12 -3.30 5.21 30.67 0.16 -3.14 16 5 C -0.11 -3.10 5.59 30.62 0.17 -2.93 16 6 C 0.13 4.77 2.81 45.07 0.13 4.90 16 7 H 0.07 2.71 7.58 -2.39 -0.02 2.69 16 8 N -0.68 -24.04 4.87 -445.12 -2.17 -26.21 16 9 C 0.56 21.93 7.74 86.76 0.67 22.60 16 10 O -0.58 -27.35 16.04 -3.93 -0.06 -27.42 16 11 C -0.20 -6.87 5.89 -20.00 -0.12 -6.98 16 12 C 0.16 4.84 10.68 85.42 0.91 5.75 16 13 N -0.49 -14.66 10.30 -187.68 -1.93 -16.59 16 14 C 0.12 3.20 6.61 40.27 0.27 3.46 16 15 C -0.12 -2.35 9.97 22.34 0.22 -2.12 16 16 C -0.08 -1.08 9.94 22.04 0.22 -0.86 16 17 C -0.11 -1.56 9.96 22.05 0.22 -1.35 16 18 C -0.10 -1.90 9.77 22.34 0.22 -1.68 16 19 C -0.13 -3.42 5.74 -21.28 -0.12 -3.55 16 20 C 0.00 0.05 9.46 23.02 0.22 0.27 16 21 C 0.17 8.44 4.88 86.36 0.42 8.86 16 22 N -0.59 -28.16 2.90 -675.22 -1.96 -30.12 16 23 C -0.24 -12.56 8.58 84.03 0.72 -11.84 16 24 H 0.07 3.79 6.25 -2.91 -0.02 3.77 16 25 C -0.05 -2.87 4.94 84.86 0.42 -2.46 16 26 N -0.93 -57.74 11.23 21.65 0.24 -57.50 16 27 Si 0.94 47.16 29.58 68.60 2.03 49.19 16 28 H -0.27 -12.75 7.11 99.48 0.71 -12.04 16 29 H -0.30 -15.42 7.11 99.48 0.71 -14.72 16 30 H -0.29 -14.46 7.11 99.48 0.71 -13.76 16 31 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 32 H 0.03 1.30 7.66 -2.39 -0.02 1.29 16 33 H 0.05 1.73 7.42 -2.39 -0.02 1.71 16 34 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 35 H 0.06 1.65 6.40 -2.39 -0.02 1.63 16 36 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 37 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 38 H 0.41 12.13 4.80 -92.71 -0.44 11.69 16 39 H 0.18 4.38 6.37 -2.91 -0.02 4.36 16 40 H 0.15 2.54 8.06 -2.91 -0.02 2.52 16 41 H 0.17 1.06 8.06 -2.91 -0.02 1.03 16 42 H 0.17 1.12 8.06 -2.91 -0.02 1.09 16 43 H 0.15 2.30 8.06 -2.91 -0.02 2.28 16 44 H 0.15 4.55 7.70 -2.91 -0.02 4.53 16 45 H 0.00 -0.05 8.14 -2.38 -0.02 -0.07 16 46 H 0.05 2.69 6.15 -2.38 -0.01 2.68 16 47 H 0.24 14.91 8.31 -92.70 -0.77 14.14 16 Total: -1.00 -76.45 375.18 2.16 -74.30 By element: Atomic # 1 Polarization: 22.72 SS G_CDS: 0.55 Total: 23.28 kcal Atomic # 6 Polarization: 5.62 SS G_CDS: 5.46 Total: 11.07 kcal Atomic # 7 Polarization: -124.61 SS G_CDS: -5.82 Total: -130.42 kcal Atomic # 8 Polarization: -27.35 SS G_CDS: -0.06 Total: -27.42 kcal Atomic # 14 Polarization: 47.16 SS G_CDS: 2.03 Total: 49.19 kcal Total: -76.45 2.16 -74.30 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071849992.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.014 kcal (2) G-P(sol) polarization free energy of solvation -76.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.296 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds