Wall clock time and date at job start Tue Mar 31 2020 22:23:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42902 * 114.00078 * 2 1 4 4 H 1.08996 * 110.63804 * 26.85563 * 3 2 1 5 5 C 1.54327 * 110.86901 * 263.61029 * 3 2 1 6 6 N 1.47024 * 107.26774 * 219.37128 * 5 3 2 7 7 C 1.36941 * 125.64618 * 179.20447 * 6 5 3 8 8 H 1.08005 * 119.99780 * 179.68989 * 7 6 5 9 9 C 1.38813 * 119.99913 * 359.69358 * 7 6 5 10 10 N 1.31616 * 119.99926 * 359.97438 * 9 7 6 11 11 Si 1.86801 * 119.99719 * 180.02562 * 9 7 6 12 12 H 1.48493 * 109.47341 * 89.99896 * 11 9 7 13 13 H 1.48503 * 109.46756 * 209.99724 * 11 9 7 14 14 H 1.48496 * 109.46957 * 329.99498 * 11 9 7 15 15 C 1.47426 * 108.70449 * 358.94057 * 6 5 3 16 16 C 1.54912 * 104.83261 * 24.12870 * 15 6 5 17 17 H 1.08997 * 111.00012 * 81.06132 * 16 15 6 18 18 N 1.46497 * 111.00243 * 204.87751 * 16 15 6 19 19 C 1.34773 * 120.00133 * 273.54537 * 18 16 15 20 20 O 1.21282 * 120.00075 * 359.97438 * 19 18 16 21 21 C 1.50697 * 120.00079 * 180.02562 * 19 18 16 22 22 N 1.46501 * 109.47402 * 180.02562 * 21 19 18 23 23 N 1.40169 * 126.34733 * 270.02678 * 22 21 19 24 24 C 1.29394 * 108.14222 * 179.97438 * 23 22 21 25 25 C 1.50704 * 125.58941 * 180.02562 * 24 23 22 26 26 N 1.37361 * 108.82989 * 359.97438 * 24 23 22 27 27 C 1.46503 * 125.83352 * 180.02562 * 26 24 23 28 28 C 1.34818 * 108.33234 * 359.73362 * 26 24 23 29 29 O 1.21816 * 126.30267 * 180.28830 * 28 26 24 30 30 H 1.08992 * 109.47089 * 300.00153 * 1 2 3 31 31 H 1.09000 * 109.46708 * 60.00384 * 1 2 3 32 32 H 1.08994 * 109.46840 * 180.02562 * 1 2 3 33 33 H 1.08995 * 109.88184 * 99.95552 * 5 3 2 34 34 H 1.09002 * 109.88385 * 338.78559 * 5 3 2 35 35 H 0.97001 * 119.99407 * 180.02562 * 10 9 7 36 36 H 1.09002 * 110.36518 * 142.96440 * 15 6 5 37 37 H 1.08995 * 110.36673 * 265.17549 * 15 6 5 38 38 H 0.97002 * 119.99825 * 93.54988 * 18 16 15 39 39 H 1.09005 * 109.46994 * 299.99757 * 21 19 18 40 40 H 1.09001 * 109.47289 * 59.99307 * 21 19 18 41 41 H 1.08998 * 109.46926 * 359.97438 * 25 24 23 42 42 H 1.08998 * 109.47030 * 119.97382 * 25 24 23 43 43 H 1.09001 * 109.47332 * 239.97697 * 25 24 23 44 44 H 1.09001 * 109.46808 * 90.00027 * 27 26 24 45 45 H 1.09005 * 109.46677 * 209.99730 * 27 26 24 46 46 H 1.08993 * 109.46825 * 329.99559 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3352 2.0266 0.4608 5 6 2.3805 1.7424 -1.4331 6 7 3.6669 2.4499 -1.3550 7 6 4.3496 2.9841 -2.4151 8 1 5.2891 3.4914 -2.2521 9 6 3.8341 2.8737 -3.6992 10 7 2.6894 2.2551 -3.8979 11 14 4.7657 3.6017 -5.1454 12 1 5.6950 2.5841 -5.6985 13 1 3.8022 4.0157 -6.1970 14 1 5.5402 4.7842 -4.6905 15 6 4.0971 2.4947 0.0544 16 6 3.3817 1.2958 0.7257 17 1 3.9172 0.3655 0.5364 18 7 3.2173 1.5207 2.1639 19 6 4.2053 1.1831 3.0160 20 8 5.2304 0.6927 2.5923 21 6 4.0360 1.4139 4.4956 22 7 5.2402 0.9677 5.2005 23 7 5.4769 -0.3167 5.7096 24 6 6.6473 -0.3219 6.2614 25 6 7.2954 -1.5057 6.9321 26 7 7.2028 0.9279 6.1348 27 6 8.5211 1.3345 6.6277 28 6 6.3302 1.7148 5.4736 29 8 6.4943 2.8855 5.1798 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 1.6138 2.4096 -1.8269 34 1 2.4776 0.8664 -2.0743 35 1 2.3294 2.1776 -4.7953 36 1 5.1787 2.3788 0.1248 37 1 3.7859 3.4315 0.5165 38 1 2.3972 1.9125 2.5029 39 1 3.8791 2.4764 4.6819 40 1 3.1745 0.8510 4.8549 41 1 6.6247 -2.3635 6.8825 42 1 8.2294 -1.7449 6.4236 43 1 7.5008 -1.2649 7.9751 44 1 9.2686 1.1577 5.8543 45 1 8.5033 2.3948 6.8803 46 1 8.7720 0.7538 7.5152 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001082349559.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:23:10 Heat of formation + Delta-G solvation = 8.833233 kcal Electronic energy + Delta-G solvation = -30047.620623 eV Core-core repulsion = 25783.386626 eV Total energy + Delta-G solvation = -4264.233997 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.58204 -39.71048 -38.15195 -37.43382 -35.95059 -35.45182 -34.05873 -32.51946 -31.81505 -30.61330 -28.79362 -27.63947 -27.40148 -26.18960 -26.06137 -24.12938 -22.10655 -21.28049 -20.77488 -20.50825 -19.93074 -17.85990 -17.60476 -16.97922 -16.60777 -16.28514 -16.02592 -15.89338 -15.45261 -14.89432 -14.73069 -14.46967 -14.24999 -14.17892 -14.01414 -13.83938 -13.45794 -13.24748 -13.13332 -12.96784 -12.81268 -12.48781 -12.14664 -12.09117 -11.99603 -11.86593 -11.52876 -11.21144 -10.99420 -10.78524 -10.74635 -10.57416 -10.36276 -10.12621 -9.98911 -9.77260 -9.70302 -9.11507 -8.78123 -8.60778 -8.55674 -6.86577 -5.71248 -3.05954 1.52410 1.74382 2.56079 2.70134 2.79733 3.32558 3.42967 3.47662 3.49696 4.10894 4.13468 4.33447 4.52258 4.64496 4.72910 4.81678 4.88410 4.94438 5.00143 5.13622 5.18700 5.32359 5.38226 5.41652 5.50294 5.57478 5.65279 5.66265 5.72099 5.84847 5.91720 5.92239 6.06498 6.17280 6.34905 6.52851 6.67684 6.86235 7.26303 7.48129 7.49106 7.61477 7.73151 7.87322 7.92897 8.22145 8.34352 9.20043 9.79845 10.43033 11.40335 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014277 B = 0.002722 C = 0.002414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1960.718924 B =10284.333709 C =11597.715153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.378 6.378 3 C 0.057 3.943 4 H 0.064 0.936 5 C 0.166 3.834 6 N -0.600 5.600 7 C -0.227 4.227 8 H 0.081 0.919 9 C -0.008 4.008 10 N -0.923 5.923 11 Si 0.915 3.085 12 H -0.288 1.288 13 H -0.290 1.290 14 H -0.281 1.281 15 C 0.131 3.869 16 C 0.135 3.865 17 H 0.103 0.897 18 N -0.713 5.713 19 C 0.496 3.504 20 O -0.522 6.522 21 C 0.144 3.856 22 N -0.436 5.436 23 N -0.271 5.271 24 C 0.273 3.727 25 C -0.075 4.075 26 N -0.558 5.558 27 C 0.099 3.901 28 C 0.654 3.346 29 O -0.550 6.550 30 H 0.033 0.967 31 H 0.045 0.955 32 H 0.079 0.921 33 H 0.049 0.951 34 H 0.063 0.937 35 H 0.253 0.747 36 H 0.050 0.950 37 H 0.024 0.976 38 H 0.397 0.603 39 H 0.125 0.875 40 H 0.125 0.875 41 H 0.100 0.900 42 H 0.091 0.909 43 H 0.090 0.910 44 H 0.073 0.927 45 H 0.088 0.912 46 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.111 -6.436 25.673 26.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.296 6.296 3 C -0.002 4.002 4 H 0.082 0.918 5 C 0.040 3.960 6 N -0.328 5.328 7 C -0.355 4.355 8 H 0.098 0.902 9 C -0.204 4.204 10 N -0.571 5.571 11 Si 0.745 3.255 12 H -0.215 1.215 13 H -0.217 1.217 14 H -0.206 1.206 15 C 0.003 3.997 16 C 0.030 3.970 17 H 0.121 0.879 18 N -0.364 5.364 19 C 0.279 3.721 20 O -0.397 6.397 21 C 0.018 3.982 22 N -0.255 5.255 23 N -0.093 5.093 24 C -0.006 4.006 25 C -0.134 4.134 26 N -0.288 5.288 27 C -0.044 4.044 28 C 0.354 3.646 29 O -0.423 6.423 30 H 0.052 0.948 31 H 0.064 0.936 32 H 0.098 0.902 33 H 0.067 0.933 34 H 0.081 0.919 35 H 0.063 0.937 36 H 0.068 0.932 37 H 0.042 0.958 38 H 0.231 0.769 39 H 0.142 0.858 40 H 0.142 0.858 41 H 0.118 0.882 42 H 0.110 0.890 43 H 0.108 0.892 44 H 0.092 0.908 45 H 0.107 0.893 46 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 2.182 -6.601 24.659 25.621 hybrid contribution 0.361 1.237 -0.663 1.449 sum 2.542 -5.364 23.996 24.720 Atomic orbital electron populations 1.22711 0.81718 1.02066 0.99757 1.87916 1.19094 1.27555 1.95039 1.23841 0.92805 0.84068 0.99535 0.91801 1.21554 0.88270 0.97218 0.88947 1.44263 1.21568 1.66236 1.00760 1.19090 1.02583 1.29089 0.84771 0.90163 1.24816 0.97466 1.00727 0.97385 1.69938 1.19429 1.47164 1.20549 0.86068 0.78608 0.78631 0.82167 1.21504 1.21658 1.20631 1.21822 0.97879 0.93788 0.86189 1.22388 0.96509 1.00927 0.77168 0.87882 1.45849 1.18923 1.64249 1.07421 1.20805 0.84145 0.78712 0.88401 1.90752 1.27756 1.42662 1.78494 1.21226 0.84996 1.02800 0.89148 1.48157 1.16595 1.07704 1.53088 1.76975 1.15288 1.01159 1.15926 1.24161 0.90497 0.88084 0.97822 1.20417 1.01256 0.91927 0.99786 1.45779 1.18706 1.10853 1.53444 1.21800 0.79938 1.02689 0.99926 1.16617 0.81290 0.85512 0.81210 1.91095 1.78637 1.12386 1.60174 0.94811 0.93638 0.90235 0.93309 0.91937 0.93679 0.93211 0.95842 0.76900 0.85770 0.85759 0.88167 0.89012 0.89178 0.90808 0.89333 0.89467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 10.85 101.05 1.10 1.57 16 2 O -0.38 -6.97 10.44 -35.23 -0.37 -7.34 16 3 C 0.06 1.08 3.07 -24.90 -0.08 1.00 16 4 H 0.06 1.06 7.68 -51.93 -0.40 0.66 16 5 C 0.17 4.09 5.15 -3.06 -0.02 4.08 16 6 N -0.60 -15.96 3.39 -170.07 -0.58 -16.54 16 7 C -0.23 -6.57 10.28 -15.06 -0.15 -6.72 16 8 H 0.08 2.26 7.83 -52.48 -0.41 1.85 16 9 C -0.01 -0.23 5.49 -17.43 -0.10 -0.32 16 10 N -0.92 -27.46 10.31 55.49 0.57 -26.89 16 11 Si 0.91 22.68 29.55 -169.99 -5.02 17.66 16 12 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 13 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 14 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 15 C 0.13 2.95 6.93 -2.53 -0.02 2.93 16 16 C 0.14 2.63 3.04 -65.78 -0.20 2.43 16 17 H 0.10 2.31 7.73 -51.93 -0.40 1.91 16 18 N -0.71 -10.67 5.23 -51.73 -0.27 -10.94 16 19 C 0.50 8.02 7.90 -10.99 -0.09 7.93 16 20 O -0.52 -11.06 16.18 5.56 0.09 -10.97 16 21 C 0.14 1.73 6.87 -5.19 -0.04 1.69 16 22 N -0.44 -6.26 3.11 -66.31 -0.21 -6.47 16 23 N -0.27 -3.49 12.53 32.97 0.41 -3.07 16 24 C 0.27 2.69 7.98 -154.16 -1.23 1.46 16 25 C -0.07 -0.31 9.85 36.01 0.35 0.04 16 26 N -0.56 -6.25 3.14 -125.41 -0.39 -6.64 16 27 C 0.10 0.65 10.85 59.85 0.65 1.30 16 28 C 0.65 10.11 8.60 -86.73 -0.75 9.37 16 29 O -0.55 -10.20 17.72 5.09 0.09 -10.11 16 30 H 0.03 0.39 8.11 -51.93 -0.42 -0.03 16 31 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 32 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.05 1.29 7.51 -51.93 -0.39 0.90 16 34 H 0.06 1.76 7.30 -51.93 -0.38 1.38 16 35 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 36 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 37 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.40 4.38 8.52 -40.82 -0.35 4.03 16 39 H 0.12 1.24 8.11 -51.93 -0.42 0.82 16 40 H 0.12 1.05 8.14 -51.93 -0.42 0.63 16 41 H 0.10 0.38 8.14 -51.93 -0.42 -0.05 16 42 H 0.09 0.28 8.14 -51.93 -0.42 -0.15 16 43 H 0.09 0.15 8.14 -51.93 -0.42 -0.27 16 44 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 45 H 0.09 0.63 8.08 -51.93 -0.42 0.21 16 46 H 0.09 0.24 7.79 -51.93 -0.40 -0.17 16 LS Contribution 390.02 15.07 5.88 5.88 Total: -1.00 -40.98 390.02 -7.29 -48.27 By element: Atomic # 1 Polarization: 7.34 SS G_CDS: -6.93 Total: 0.41 kcal Atomic # 6 Polarization: 27.33 SS G_CDS: -0.56 Total: 26.77 kcal Atomic # 7 Polarization: -70.09 SS G_CDS: -0.46 Total: -70.56 kcal Atomic # 8 Polarization: -28.24 SS G_CDS: -0.19 Total: -28.43 kcal Atomic # 14 Polarization: 22.68 SS G_CDS: -5.02 Total: 17.66 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -40.98 -7.29 -48.27 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001082349559.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.102 kcal (2) G-P(sol) polarization free energy of solvation -40.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.268 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds