Wall clock time and date at job start Tue Mar 31 2020 22:23:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42902 * 114.00078 * 2 1 4 4 H 1.08996 * 110.63804 * 26.85563 * 3 2 1 5 5 C 1.54327 * 110.86901 * 263.61029 * 3 2 1 6 6 N 1.47024 * 107.26774 * 219.37128 * 5 3 2 7 7 C 1.36941 * 125.64618 * 179.20447 * 6 5 3 8 8 H 1.08005 * 119.99780 * 179.68989 * 7 6 5 9 9 C 1.38813 * 119.99913 * 359.69358 * 7 6 5 10 10 N 1.31616 * 119.99926 * 359.97438 * 9 7 6 11 11 Si 1.86801 * 119.99719 * 180.02562 * 9 7 6 12 12 H 1.48493 * 109.47341 * 89.99896 * 11 9 7 13 13 H 1.48503 * 109.46756 * 209.99724 * 11 9 7 14 14 H 1.48496 * 109.46957 * 329.99498 * 11 9 7 15 15 C 1.47426 * 108.70449 * 358.94057 * 6 5 3 16 16 C 1.54912 * 104.83261 * 24.12870 * 15 6 5 17 17 H 1.08997 * 111.00012 * 81.06132 * 16 15 6 18 18 N 1.46497 * 111.00243 * 204.87751 * 16 15 6 19 19 C 1.34773 * 120.00133 * 273.54537 * 18 16 15 20 20 O 1.21282 * 120.00075 * 359.97438 * 19 18 16 21 21 C 1.50697 * 120.00079 * 180.02562 * 19 18 16 22 22 N 1.46501 * 109.47402 * 180.02562 * 21 19 18 23 23 N 1.40169 * 126.34733 * 270.02678 * 22 21 19 24 24 C 1.29394 * 108.14222 * 179.97438 * 23 22 21 25 25 C 1.50704 * 125.58941 * 180.02562 * 24 23 22 26 26 N 1.37361 * 108.82989 * 359.97438 * 24 23 22 27 27 C 1.46503 * 125.83352 * 180.02562 * 26 24 23 28 28 C 1.34818 * 108.33234 * 359.73362 * 26 24 23 29 29 O 1.21816 * 126.30267 * 180.28830 * 28 26 24 30 30 H 1.08992 * 109.47089 * 300.00153 * 1 2 3 31 31 H 1.09000 * 109.46708 * 60.00384 * 1 2 3 32 32 H 1.08994 * 109.46840 * 180.02562 * 1 2 3 33 33 H 1.08995 * 109.88184 * 99.95552 * 5 3 2 34 34 H 1.09002 * 109.88385 * 338.78559 * 5 3 2 35 35 H 0.97001 * 119.99407 * 180.02562 * 10 9 7 36 36 H 1.09002 * 110.36518 * 142.96440 * 15 6 5 37 37 H 1.08995 * 110.36673 * 265.17549 * 15 6 5 38 38 H 0.97002 * 119.99825 * 93.54988 * 18 16 15 39 39 H 1.09005 * 109.46994 * 299.99757 * 21 19 18 40 40 H 1.09001 * 109.47289 * 59.99307 * 21 19 18 41 41 H 1.08998 * 109.46926 * 359.97438 * 25 24 23 42 42 H 1.08998 * 109.47030 * 119.97382 * 25 24 23 43 43 H 1.09001 * 109.47332 * 239.97697 * 25 24 23 44 44 H 1.09001 * 109.46808 * 90.00027 * 27 26 24 45 45 H 1.09005 * 109.46677 * 209.99730 * 27 26 24 46 46 H 1.08993 * 109.46825 * 329.99559 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3352 2.0266 0.4608 5 6 2.3805 1.7424 -1.4331 6 7 3.6669 2.4499 -1.3550 7 6 4.3496 2.9841 -2.4151 8 1 5.2891 3.4914 -2.2521 9 6 3.8341 2.8737 -3.6992 10 7 2.6894 2.2551 -3.8979 11 14 4.7657 3.6017 -5.1454 12 1 5.6950 2.5841 -5.6985 13 1 3.8022 4.0157 -6.1970 14 1 5.5402 4.7842 -4.6905 15 6 4.0971 2.4947 0.0544 16 6 3.3817 1.2958 0.7257 17 1 3.9172 0.3655 0.5364 18 7 3.2173 1.5207 2.1639 19 6 4.2053 1.1831 3.0160 20 8 5.2304 0.6927 2.5923 21 6 4.0360 1.4139 4.4956 22 7 5.2402 0.9677 5.2005 23 7 5.4769 -0.3167 5.7096 24 6 6.6473 -0.3219 6.2614 25 6 7.2954 -1.5057 6.9321 26 7 7.2028 0.9279 6.1348 27 6 8.5211 1.3345 6.6277 28 6 6.3302 1.7148 5.4736 29 8 6.4943 2.8855 5.1798 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 1.6138 2.4096 -1.8269 34 1 2.4776 0.8664 -2.0743 35 1 2.3294 2.1776 -4.7953 36 1 5.1787 2.3788 0.1248 37 1 3.7859 3.4315 0.5165 38 1 2.3972 1.9125 2.5029 39 1 3.8791 2.4764 4.6819 40 1 3.1745 0.8510 4.8549 41 1 6.6247 -2.3635 6.8825 42 1 8.2294 -1.7449 6.4236 43 1 7.5008 -1.2649 7.9751 44 1 9.2686 1.1577 5.8543 45 1 8.5033 2.3948 6.8803 46 1 8.7720 0.7538 7.5152 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001082349559.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:23:09 Heat of formation + Delta-G solvation = -23.671616 kcal Electronic energy + Delta-G solvation = -30049.030139 eV Core-core repulsion = 25783.386626 eV Total energy + Delta-G solvation = -4265.643513 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.49507 -41.14175 -39.68719 -38.55111 -37.54832 -36.40400 -35.69187 -33.83398 -33.24972 -31.51527 -30.48879 -29.02342 -28.29839 -27.57478 -27.22984 -25.91663 -23.21133 -22.42279 -22.16197 -21.96768 -21.49371 -19.33045 -18.67565 -18.54646 -17.91610 -17.49947 -17.25109 -17.01459 -16.92755 -16.34154 -16.12180 -15.86248 -15.75749 -15.26682 -15.07263 -14.95299 -14.64272 -14.55589 -14.22256 -14.10070 -13.66006 -13.64999 -13.49547 -13.25817 -13.09968 -12.98587 -12.91428 -12.87373 -12.78282 -12.61863 -12.33238 -12.10349 -11.90954 -11.69519 -11.56090 -11.43963 -10.87776 -10.81335 -10.59117 -10.20736 -9.60739 -9.01582 -7.91622 -5.30111 0.63311 0.96556 1.42022 1.44903 1.45404 1.49247 1.54038 1.93154 2.16833 2.43237 2.74482 3.27293 3.35564 3.46976 3.52635 3.75810 3.83646 3.88014 4.04685 4.06782 4.11825 4.23423 4.31347 4.43359 4.43552 4.60022 4.65851 4.70780 4.75611 4.76565 4.83637 4.84674 4.89224 4.90686 4.97811 5.08683 5.28350 5.32303 5.38832 5.61796 5.64907 6.09581 6.30082 6.40888 6.58517 6.88426 7.00947 7.12154 7.64871 8.27543 9.17848 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014277 B = 0.002722 C = 0.002414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1960.718924 B =10284.333709 C =11597.715153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.397 6.397 3 C 0.080 3.920 4 H 0.103 0.897 5 C 0.174 3.826 6 N -0.622 5.622 7 C -0.252 4.252 8 H 0.078 0.922 9 C -0.060 4.060 10 N -0.947 5.947 11 Si 0.983 3.017 12 H -0.287 1.287 13 H -0.287 1.287 14 H -0.269 1.269 15 C 0.132 3.868 16 C 0.154 3.846 17 H 0.069 0.931 18 N -0.694 5.694 19 C 0.494 3.506 20 O -0.579 6.579 21 C 0.146 3.854 22 N -0.445 5.445 23 N -0.306 5.306 24 C 0.285 3.715 25 C -0.073 4.073 26 N -0.557 5.557 27 C 0.089 3.911 28 C 0.632 3.368 29 O -0.596 6.596 30 H 0.068 0.932 31 H 0.035 0.965 32 H 0.101 0.899 33 H 0.025 0.975 34 H 0.018 0.982 35 H 0.250 0.750 36 H 0.024 0.976 37 H 0.041 0.959 38 H 0.422 0.578 39 H 0.146 0.854 40 H 0.166 0.834 41 H 0.106 0.894 42 H 0.109 0.891 43 H 0.125 0.875 44 H 0.076 0.924 45 H 0.079 0.921 46 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.807 -7.037 28.459 29.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.316 6.316 3 C 0.021 3.979 4 H 0.120 0.880 5 C 0.049 3.951 6 N -0.350 5.350 7 C -0.380 4.380 8 H 0.096 0.904 9 C -0.253 4.253 10 N -0.595 5.595 11 Si 0.810 3.190 12 H -0.214 1.214 13 H -0.213 1.213 14 H -0.194 1.194 15 C 0.005 3.995 16 C 0.047 3.953 17 H 0.087 0.913 18 N -0.347 5.347 19 C 0.280 3.720 20 O -0.457 6.457 21 C 0.022 3.978 22 N -0.263 5.263 23 N -0.130 5.130 24 C 0.007 3.993 25 C -0.132 4.132 26 N -0.285 5.285 27 C -0.051 4.051 28 C 0.332 3.668 29 O -0.473 6.473 30 H 0.087 0.913 31 H 0.053 0.947 32 H 0.119 0.881 33 H 0.044 0.956 34 H 0.036 0.964 35 H 0.060 0.940 36 H 0.043 0.957 37 H 0.059 0.941 38 H 0.260 0.740 39 H 0.163 0.837 40 H 0.184 0.816 41 H 0.125 0.875 42 H 0.127 0.873 43 H 0.143 0.857 44 H 0.095 0.905 45 H 0.098 0.902 46 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 1.852 -7.223 27.520 28.513 hybrid contribution 0.505 1.336 -1.474 2.053 sum 2.357 -5.887 26.046 26.807 Atomic orbital electron populations 1.23017 0.79103 1.03983 1.00938 1.87901 1.21958 1.26801 1.94912 1.23453 0.93288 0.85481 0.95678 0.87956 1.21313 0.87031 0.94696 0.92104 1.44524 1.22324 1.66211 1.01897 1.19424 1.02984 1.29522 0.86080 0.90383 1.25685 0.98473 1.01297 0.99893 1.70154 1.20641 1.47965 1.20778 0.85027 0.77343 0.78050 0.78570 1.21360 1.21256 1.19430 1.21891 0.96809 0.95877 0.84945 1.21777 0.95969 0.97849 0.79728 0.91252 1.45549 1.19988 1.63938 1.05228 1.21651 0.83046 0.77111 0.90200 1.90729 1.30045 1.45210 1.79721 1.21467 0.85906 1.04866 0.85594 1.48402 1.16799 1.08294 1.52855 1.76993 1.17375 1.00455 1.18150 1.25294 0.89539 0.88624 0.95807 1.20767 1.01506 0.89616 1.01305 1.46067 1.19304 1.10836 1.52257 1.22179 0.77957 1.03185 1.01828 1.17052 0.82378 0.85566 0.81852 1.91034 1.79749 1.14336 1.62214 0.91315 0.94655 0.88111 0.95645 0.96396 0.94036 0.95714 0.94117 0.74000 0.83660 0.81614 0.87528 0.87256 0.85704 0.90539 0.90213 0.84693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.65 10.85 113.37 1.23 1.88 16 2 O -0.40 -14.32 10.44 -148.98 -1.56 -15.88 16 3 C 0.08 3.03 3.07 31.78 0.10 3.13 16 4 H 0.10 3.10 7.68 -2.39 -0.02 3.08 16 5 C 0.17 8.93 5.15 86.73 0.45 9.38 16 6 N -0.62 -34.31 3.39 -691.97 -2.35 -36.66 16 7 C -0.25 -15.03 10.28 84.03 0.86 -14.17 16 8 H 0.08 4.55 7.83 -2.91 -0.02 4.53 16 9 C -0.06 -3.55 5.49 84.86 0.47 -3.09 16 10 N -0.95 -58.22 10.31 21.65 0.22 -58.00 16 11 Si 0.98 47.54 29.55 68.60 2.03 49.57 16 12 H -0.29 -13.74 7.11 99.48 0.71 -13.04 16 13 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 14 H -0.27 -12.43 7.11 99.48 0.71 -11.73 16 15 C 0.13 6.11 6.93 86.86 0.60 6.71 16 16 C 0.15 6.04 3.04 46.38 0.14 6.19 16 17 H 0.07 3.24 7.73 -2.39 -0.02 3.22 16 18 N -0.69 -19.89 5.23 -435.98 -2.28 -22.17 16 19 C 0.49 15.75 7.90 87.66 0.69 16.45 16 20 O -0.58 -25.25 16.18 -3.04 -0.05 -25.30 16 21 C 0.15 3.28 6.87 85.63 0.59 3.87 16 22 N -0.45 -12.48 3.11 -481.77 -1.50 -13.98 16 23 N -0.31 -7.50 12.53 -49.59 -0.62 -8.12 16 24 C 0.28 5.04 7.98 137.69 1.10 6.14 16 25 C -0.07 -0.35 9.85 71.24 0.70 0.36 16 26 N -0.56 -11.79 3.14 -668.81 -2.10 -13.89 16 27 C 0.09 1.01 10.85 127.77 1.39 2.40 16 28 C 0.63 19.58 8.60 178.99 1.54 21.12 16 29 O -0.60 -22.72 17.72 -4.72 -0.08 -22.81 16 30 H 0.07 1.31 8.11 -2.39 -0.02 1.29 16 31 H 0.03 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.10 2.16 8.14 -2.39 -0.02 2.14 16 33 H 0.03 1.40 7.51 -2.39 -0.02 1.38 16 34 H 0.02 1.06 7.30 -2.39 -0.02 1.04 16 35 H 0.25 14.84 8.31 -92.71 -0.77 14.06 16 36 H 0.02 1.25 8.14 -2.39 -0.02 1.23 16 37 H 0.04 1.76 8.14 -2.39 -0.02 1.75 16 38 H 0.42 7.98 8.52 -92.71 -0.79 7.19 16 39 H 0.15 2.63 8.11 -2.38 -0.02 2.61 16 40 H 0.17 2.27 8.14 -2.39 -0.02 2.25 16 41 H 0.11 0.45 8.14 -2.39 -0.02 0.43 16 42 H 0.11 0.23 8.14 -2.39 -0.02 0.21 16 43 H 0.12 -0.21 8.14 -2.39 -0.02 -0.23 16 44 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 45 H 0.08 1.08 8.08 -2.38 -0.02 1.06 16 46 H 0.13 0.20 7.79 -2.39 -0.02 0.18 16 Total: -1.00 -97.11 390.02 1.78 -95.33 By element: Atomic # 1 Polarization: 11.32 SS G_CDS: 0.21 Total: 11.54 kcal Atomic # 6 Polarization: 50.51 SS G_CDS: 9.85 Total: 60.36 kcal Atomic # 7 Polarization: -144.19 SS G_CDS: -8.63 Total: -152.82 kcal Atomic # 8 Polarization: -62.30 SS G_CDS: -1.69 Total: -63.99 kcal Atomic # 14 Polarization: 47.54 SS G_CDS: 2.03 Total: 49.57 kcal Total: -97.11 1.78 -95.33 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001082349559.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.662 kcal (2) G-P(sol) polarization free energy of solvation -97.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.334 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds