Wall clock time and date at job start Tue Mar 31 2020 22:16:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.30825 * 119.23184 * 2 1 4 4 C 1.33796 * 121.72154 * 179.70785 * 3 2 1 5 5 C 1.40530 * 120.82922 * 179.74837 * 4 3 2 6 6 C 1.36127 * 119.81520 * 180.24986 * 5 4 3 7 7 C 1.39344 * 121.09452 * 0.24818 * 6 5 4 8 8 C 1.36140 * 120.83741 * 0.03104 * 7 6 5 9 9 C 1.40549 * 119.61621 * 359.96863 * 8 7 6 10 10 C 1.40492 * 121.22118 * 180.02562 * 9 8 7 11 11 C 1.39037 * 117.96618 * 179.97438 * 10 9 8 12 12 C 1.47757 * 120.26825 * 180.02562 * 11 10 9 13 13 O 1.21569 * 119.99795 * 173.68918 * 12 11 10 14 14 N 1.34778 * 120.00469 * 353.68506 * 12 11 10 15 15 C 1.46497 * 120.00169 * 180.02562 * 14 12 11 16 16 C 1.53004 * 109.46917 * 180.02562 * 15 14 12 17 17 H 1.08995 * 112.85234 * 43.79754 * 16 15 14 18 18 C 1.53778 * 113.61268 * 174.99960 * 16 15 14 19 19 C 1.53782 * 87.07942 * 139.97784 * 18 16 15 20 20 H 1.09002 * 113.61580 * 89.20157 * 19 18 16 21 21 N 1.46502 * 113.61197 * 220.01752 * 19 18 16 22 22 C 1.36945 * 119.99853 * 204.99991 * 21 19 18 23 23 H 1.07995 * 119.99728 * 0.02562 * 22 21 19 24 24 C 1.38806 * 119.99714 * 180.02562 * 22 21 19 25 25 N 1.31619 * 120.00136 * 359.97438 * 24 22 21 26 26 Si 1.86806 * 119.99811 * 179.97438 * 24 22 21 27 27 H 1.48504 * 109.46938 * 59.99944 * 26 24 22 28 28 H 1.48500 * 109.47224 * 179.97438 * 26 24 22 29 29 H 1.48496 * 109.47171 * 299.99680 * 26 24 22 30 30 C 1.53783 * 87.08299 * 334.56451 * 19 18 16 31 31 H 1.08998 * 109.46906 * 263.33306 * 1 2 3 32 32 H 1.09003 * 109.47198 * 23.33572 * 1 2 3 33 33 H 1.09002 * 109.46970 * 143.33745 * 1 2 3 34 34 H 1.08000 * 120.08855 * 0.51866 * 5 4 3 35 35 H 1.08002 * 119.45120 * 180.27555 * 6 5 4 36 36 H 1.08001 * 119.57982 * 180.02562 * 7 6 5 37 37 H 1.07994 * 120.18905 * 179.97438 * 8 7 6 38 38 H 1.08001 * 121.01582 * 0.02562 * 10 9 8 39 39 H 0.97002 * 119.99477 * 0.02562 * 14 12 11 40 40 H 1.09001 * 109.46934 * 299.99529 * 15 14 12 41 41 H 1.08999 * 109.47330 * 60.00118 * 15 14 12 42 42 H 1.08997 * 113.61177 * 254.52449 * 18 16 15 43 43 H 1.08993 * 113.61720 * 25.43027 * 18 16 15 44 44 H 0.96997 * 120.00365 * 25.00011 * 21 19 18 45 45 H 0.97005 * 119.99966 * 180.02562 * 25 24 22 46 46 H 1.09002 * 113.61244 * 270.88559 * 30 19 18 47 47 H 1.08999 * 113.60996 * 139.97831 * 30 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1458 1.1416 0.0000 4 6 3.4825 1.1998 0.0058 5 6 4.1496 2.4366 0.0004 6 6 5.5104 2.4717 0.0013 7 6 6.2606 1.2974 0.0024 8 6 5.6511 0.0800 0.0019 9 6 4.2476 0.0059 0.0010 10 6 3.5837 -1.2323 0.0010 11 6 2.1934 -1.2267 0.0006 12 6 1.4434 -2.4998 0.0012 13 8 0.2333 -2.4923 0.1166 14 7 2.1009 -3.6694 -0.1263 15 6 1.3573 -4.9316 -0.1262 16 6 2.3339 -6.0989 -0.2831 17 1 3.2232 -5.9932 0.3382 18 6 1.6661 -7.4797 -0.1733 19 6 2.5848 -7.9281 -1.3222 20 1 3.5428 -8.3245 -0.9859 21 7 1.9218 -8.7953 -2.2993 22 6 2.6609 -9.6674 -3.0534 23 1 3.7323 -9.7161 -2.9274 24 6 2.0328 -10.4886 -3.9795 25 7 0.7268 -10.4296 -4.1326 26 14 3.0410 -11.6777 -5.0087 27 1 3.7538 -12.6250 -4.1143 28 1 2.1403 -12.4353 -5.9143 29 1 4.0302 -10.9187 -5.8151 30 6 2.6420 -6.4515 -1.7480 31 1 -0.3633 -0.1193 1.0207 32 1 -0.3634 0.9436 -0.4071 33 1 -0.3633 -0.8244 -0.6136 34 1 3.5842 3.3568 -0.0001 35 1 6.0171 3.4255 0.0017 36 1 7.3391 1.3537 0.0035 37 1 6.2427 -0.8235 0.0023 38 1 4.1365 -2.1601 0.0022 39 1 3.0666 -3.6753 -0.2180 40 1 0.8166 -5.0347 0.8146 41 1 0.6491 -4.9361 -0.9548 42 1 1.8667 -7.9879 0.7698 43 1 0.6084 -7.4754 -0.4363 44 1 0.9594 -8.7518 -2.4122 45 1 0.2879 -11.0038 -4.7796 46 1 1.8510 -6.1661 -2.4415 47 1 3.6304 -6.1297 -2.0759 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086100639.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:16:06 Heat of formation + Delta-G solvation = 48.991391 kcal Electronic energy + Delta-G solvation = -27602.041953 eV Core-core repulsion = 23750.398608 eV Total energy + Delta-G solvation = -3851.643345 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.43246 -39.82751 -38.58235 -37.38511 -35.03220 -33.98540 -33.25580 -32.15141 -30.87337 -30.15358 -28.25209 -27.26855 -25.15011 -24.95960 -23.83768 -22.95577 -22.49116 -21.25354 -21.05680 -19.26952 -18.63794 -17.90104 -17.17528 -17.03336 -16.09010 -15.92042 -15.70265 -15.11311 -14.95735 -14.85108 -14.66528 -14.51003 -14.00470 -13.83251 -13.58094 -13.46528 -13.24542 -13.08778 -12.93958 -12.32351 -12.15616 -11.96531 -11.87669 -11.86194 -11.68461 -11.44955 -11.26280 -10.93892 -10.84761 -10.56114 -10.28322 -10.21848 -10.12137 -9.86864 -9.68254 -9.50631 -9.25499 -8.98735 -8.89075 -8.67854 -6.99247 -5.80539 -3.09689 -0.20722 0.26420 1.43673 2.22550 2.90205 2.97643 3.41236 3.45731 3.46975 3.69533 3.81959 4.07806 4.16924 4.26502 4.35972 4.55843 4.65973 4.67181 4.80742 4.90635 4.94189 5.02064 5.16669 5.21977 5.29529 5.42881 5.44450 5.46793 5.52076 5.61228 5.70747 5.76430 5.79411 5.87358 5.88264 5.94672 5.97223 6.05626 6.13356 6.22709 6.27492 6.31393 6.38314 6.42256 6.54605 6.77780 7.06902 7.27956 7.56203 7.65905 7.99864 8.37928 9.48899 10.06958 10.41018 11.41638 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.016211 B = 0.001953 C = 0.001823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1726.769783 B =14334.711134 C =15351.554678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C 0.213 3.787 3 N -0.483 5.483 4 C 0.150 3.850 5 C -0.102 4.102 6 C -0.090 4.090 7 C -0.124 4.124 8 C -0.085 4.085 9 C -0.120 4.120 10 C -0.014 4.014 11 C -0.185 4.185 12 C 0.559 3.441 13 O -0.526 6.526 14 N -0.718 5.718 15 C 0.132 3.868 16 C -0.128 4.128 17 H 0.088 0.912 18 C -0.142 4.142 19 C 0.166 3.834 20 H 0.075 0.925 21 N -0.712 5.712 22 C -0.246 4.246 23 H 0.070 0.930 24 C -0.013 4.013 25 N -0.932 5.932 26 Si 0.908 3.092 27 H -0.286 1.286 28 H -0.291 1.291 29 H -0.286 1.286 30 C -0.161 4.161 31 H 0.085 0.915 32 H 0.070 0.930 33 H 0.106 0.894 34 H 0.137 0.863 35 H 0.131 0.869 36 H 0.130 0.870 37 H 0.134 0.866 38 H 0.145 0.855 39 H 0.398 0.602 40 H 0.068 0.932 41 H 0.073 0.927 42 H 0.062 0.938 43 H 0.081 0.919 44 H 0.385 0.615 45 H 0.256 0.744 46 H 0.079 0.921 47 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.348 25.691 11.938 29.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.060 3.940 3 N -0.192 5.192 4 C 0.029 3.971 5 C -0.120 4.120 6 C -0.110 4.110 7 C -0.142 4.142 8 C -0.103 4.103 9 C -0.122 4.122 10 C -0.040 4.040 11 C -0.190 4.190 12 C 0.345 3.655 13 O -0.404 6.404 14 N -0.369 5.369 15 C 0.009 3.991 16 C -0.148 4.148 17 H 0.106 0.894 18 C -0.182 4.182 19 C 0.054 3.946 20 H 0.093 0.907 21 N -0.350 5.350 22 C -0.377 4.377 23 H 0.088 0.912 24 C -0.209 4.209 25 N -0.579 5.579 26 Si 0.739 3.261 27 H -0.212 1.212 28 H -0.217 1.217 29 H -0.212 1.212 30 C -0.203 4.203 31 H 0.103 0.897 32 H 0.088 0.912 33 H 0.124 0.876 34 H 0.155 0.845 35 H 0.149 0.851 36 H 0.148 0.852 37 H 0.151 0.849 38 H 0.163 0.837 39 H 0.233 0.767 40 H 0.086 0.914 41 H 0.092 0.908 42 H 0.080 0.920 43 H 0.100 0.900 44 H 0.220 0.780 45 H 0.066 0.934 46 H 0.097 0.903 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 8.183 26.349 11.897 30.046 hybrid contribution 1.340 -1.380 -0.691 2.044 sum 9.523 24.969 11.207 28.978 Atomic orbital electron populations 1.21129 0.87171 1.04117 1.04476 1.21623 0.97752 0.86163 0.88426 1.67929 1.08193 1.28126 1.14912 1.19032 0.89183 0.93044 0.95871 1.20834 0.94240 0.96437 1.00531 1.21000 0.93692 0.98920 0.97377 1.20949 1.00552 0.92259 1.00468 1.21072 0.92404 0.98839 0.98034 1.18768 0.95015 0.93583 1.04801 1.22011 0.93216 0.97757 0.91025 1.20857 0.94045 0.95458 1.08629 1.17935 0.87211 0.83226 0.77086 1.90753 1.13371 1.86883 1.49395 1.45987 1.10994 1.06113 1.73833 1.21511 0.94447 0.80758 1.02350 1.22654 0.98490 0.93949 0.99672 0.89401 1.23448 1.00672 0.93789 1.00245 1.21514 0.95176 0.88762 0.89173 0.90684 1.42406 1.07071 1.43271 1.42278 1.19248 0.91300 1.13182 1.13967 0.91169 1.24777 0.95715 1.00284 1.00125 1.69650 1.07438 1.42382 1.38471 0.86264 0.78917 0.80929 0.80033 1.21231 1.21668 1.21249 1.23968 1.00938 1.01568 0.93787 0.89695 0.91150 0.87587 0.84508 0.85087 0.85236 0.84853 0.83736 0.76745 0.91394 0.90833 0.91957 0.90026 0.78042 0.93370 0.90274 0.92819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.23 8.82 36.00 0.32 -0.91 16 2 C 0.21 2.55 6.82 -82.15 -0.56 1.99 16 3 N -0.48 -5.84 10.20 -6.93 -0.07 -5.91 16 4 C 0.15 1.60 6.61 -84.79 -0.56 1.04 16 5 C -0.10 -0.84 9.97 -39.48 -0.39 -1.24 16 6 C -0.09 -0.55 9.94 -39.93 -0.40 -0.95 16 7 C -0.12 -0.73 9.96 -39.92 -0.40 -1.13 16 8 C -0.08 -0.58 9.77 -39.46 -0.39 -0.96 16 9 C -0.12 -1.11 5.74 -106.81 -0.61 -1.72 16 10 C -0.01 -0.12 9.38 -38.44 -0.36 -0.48 16 11 C -0.18 -2.04 5.88 -104.83 -0.62 -2.65 16 12 C 0.56 6.85 7.69 -12.37 -0.10 6.75 16 13 O -0.53 -7.85 13.31 5.31 0.07 -7.78 16 14 N -0.72 -7.60 5.51 -61.28 -0.34 -7.94 16 15 C 0.13 1.61 5.51 -4.04 -0.02 1.58 16 16 C -0.13 -1.59 3.76 -89.80 -0.34 -1.93 16 17 H 0.09 0.93 8.14 -51.93 -0.42 0.50 16 18 C -0.14 -2.15 7.39 -25.92 -0.19 -2.34 16 19 C 0.17 3.10 4.48 -67.12 -0.30 2.80 16 20 H 0.08 1.39 8.10 -51.93 -0.42 0.97 16 21 N -0.71 -17.44 5.40 -52.63 -0.28 -17.73 16 22 C -0.25 -6.71 9.97 -15.06 -0.15 -6.86 16 23 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 24 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 25 N -0.93 -27.92 13.06 55.49 0.72 -27.19 16 26 Si 0.91 22.11 29.55 -169.99 -5.02 17.09 16 27 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 28 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 29 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 30 C -0.16 -2.54 7.43 -25.92 -0.19 -2.73 16 31 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.11 1.29 5.81 -51.93 -0.30 0.99 16 34 H 0.14 0.97 8.06 -52.49 -0.42 0.55 16 35 H 0.13 0.46 8.06 -52.49 -0.42 0.03 16 36 H 0.13 0.44 8.06 -52.49 -0.42 0.02 16 37 H 0.13 0.59 8.06 -52.49 -0.42 0.16 16 38 H 0.15 0.81 6.53 -52.49 -0.34 0.47 16 39 H 0.40 3.19 6.59 -40.82 -0.27 2.92 16 40 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 41 H 0.07 1.03 7.84 -51.93 -0.41 0.62 16 42 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 43 H 0.08 1.31 8.08 -51.93 -0.42 0.89 16 44 H 0.39 10.08 7.92 -40.82 -0.32 9.76 16 45 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 46 H 0.08 1.39 7.90 -51.93 -0.41 0.98 16 47 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 388.95 15.07 5.86 5.86 Total: -1.00 -32.95 388.95 -11.08 -44.03 By element: Atomic # 1 Polarization: 16.44 SS G_CDS: -6.67 Total: 9.77 kcal Atomic # 6 Polarization: -4.85 SS G_CDS: -5.35 Total: -10.20 kcal Atomic # 7 Polarization: -58.79 SS G_CDS: 0.03 Total: -58.76 kcal Atomic # 8 Polarization: -7.85 SS G_CDS: 0.07 Total: -7.78 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -32.95 -11.08 -44.03 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086100639.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.018 kcal (2) G-P(sol) polarization free energy of solvation -32.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.027 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds