Wall clock time and date at job start Tue Mar 31 2020 22:16:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.30825 * 119.23184 * 2 1 4 4 C 1.33796 * 121.72154 * 179.70785 * 3 2 1 5 5 C 1.40530 * 120.82922 * 179.74837 * 4 3 2 6 6 C 1.36127 * 119.81520 * 180.24986 * 5 4 3 7 7 C 1.39344 * 121.09452 * 0.24818 * 6 5 4 8 8 C 1.36140 * 120.83741 * 0.03104 * 7 6 5 9 9 C 1.40549 * 119.61621 * 359.96863 * 8 7 6 10 10 C 1.40492 * 121.22118 * 180.02562 * 9 8 7 11 11 C 1.39037 * 117.96618 * 179.97438 * 10 9 8 12 12 C 1.47757 * 120.26825 * 180.02562 * 11 10 9 13 13 O 1.21569 * 119.99795 * 173.68918 * 12 11 10 14 14 N 1.34778 * 120.00469 * 353.68506 * 12 11 10 15 15 C 1.46497 * 120.00169 * 180.02562 * 14 12 11 16 16 C 1.53004 * 109.46917 * 180.02562 * 15 14 12 17 17 H 1.08995 * 112.85234 * 43.79754 * 16 15 14 18 18 C 1.53778 * 113.61268 * 174.99960 * 16 15 14 19 19 C 1.53782 * 87.07942 * 139.97784 * 18 16 15 20 20 H 1.09002 * 113.61580 * 89.20157 * 19 18 16 21 21 N 1.46502 * 113.61197 * 220.01752 * 19 18 16 22 22 C 1.36945 * 119.99853 * 204.99991 * 21 19 18 23 23 H 1.07995 * 119.99728 * 0.02562 * 22 21 19 24 24 C 1.38806 * 119.99714 * 180.02562 * 22 21 19 25 25 N 1.31619 * 120.00136 * 359.97438 * 24 22 21 26 26 Si 1.86806 * 119.99811 * 179.97438 * 24 22 21 27 27 H 1.48504 * 109.46938 * 59.99944 * 26 24 22 28 28 H 1.48500 * 109.47224 * 179.97438 * 26 24 22 29 29 H 1.48496 * 109.47171 * 299.99680 * 26 24 22 30 30 C 1.53783 * 87.08299 * 334.56451 * 19 18 16 31 31 H 1.08998 * 109.46906 * 263.33306 * 1 2 3 32 32 H 1.09003 * 109.47198 * 23.33572 * 1 2 3 33 33 H 1.09002 * 109.46970 * 143.33745 * 1 2 3 34 34 H 1.08000 * 120.08855 * 0.51866 * 5 4 3 35 35 H 1.08002 * 119.45120 * 180.27555 * 6 5 4 36 36 H 1.08001 * 119.57982 * 180.02562 * 7 6 5 37 37 H 1.07994 * 120.18905 * 179.97438 * 8 7 6 38 38 H 1.08001 * 121.01582 * 0.02562 * 10 9 8 39 39 H 0.97002 * 119.99477 * 0.02562 * 14 12 11 40 40 H 1.09001 * 109.46934 * 299.99529 * 15 14 12 41 41 H 1.08999 * 109.47330 * 60.00118 * 15 14 12 42 42 H 1.08997 * 113.61177 * 254.52449 * 18 16 15 43 43 H 1.08993 * 113.61720 * 25.43027 * 18 16 15 44 44 H 0.96997 * 120.00365 * 25.00011 * 21 19 18 45 45 H 0.97005 * 119.99966 * 180.02562 * 25 24 22 46 46 H 1.09002 * 113.61244 * 270.88559 * 30 19 18 47 47 H 1.08999 * 113.60996 * 139.97831 * 30 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1458 1.1416 0.0000 4 6 3.4825 1.1998 0.0058 5 6 4.1496 2.4366 0.0004 6 6 5.5104 2.4717 0.0013 7 6 6.2606 1.2974 0.0024 8 6 5.6511 0.0800 0.0019 9 6 4.2476 0.0059 0.0010 10 6 3.5837 -1.2323 0.0010 11 6 2.1934 -1.2267 0.0006 12 6 1.4434 -2.4998 0.0012 13 8 0.2333 -2.4923 0.1166 14 7 2.1009 -3.6694 -0.1263 15 6 1.3573 -4.9316 -0.1262 16 6 2.3339 -6.0989 -0.2831 17 1 3.2232 -5.9932 0.3382 18 6 1.6661 -7.4797 -0.1733 19 6 2.5848 -7.9281 -1.3222 20 1 3.5428 -8.3245 -0.9859 21 7 1.9218 -8.7953 -2.2993 22 6 2.6609 -9.6674 -3.0534 23 1 3.7323 -9.7161 -2.9274 24 6 2.0328 -10.4886 -3.9795 25 7 0.7268 -10.4296 -4.1326 26 14 3.0410 -11.6777 -5.0087 27 1 3.7538 -12.6250 -4.1143 28 1 2.1403 -12.4353 -5.9143 29 1 4.0302 -10.9187 -5.8151 30 6 2.6420 -6.4515 -1.7480 31 1 -0.3633 -0.1193 1.0207 32 1 -0.3634 0.9436 -0.4071 33 1 -0.3633 -0.8244 -0.6136 34 1 3.5842 3.3568 -0.0001 35 1 6.0171 3.4255 0.0017 36 1 7.3391 1.3537 0.0035 37 1 6.2427 -0.8235 0.0023 38 1 4.1365 -2.1601 0.0022 39 1 3.0666 -3.6753 -0.2180 40 1 0.8166 -5.0347 0.8146 41 1 0.6491 -4.9361 -0.9548 42 1 1.8667 -7.9879 0.7698 43 1 0.6084 -7.4754 -0.4363 44 1 0.9594 -8.7518 -2.4122 45 1 0.2879 -11.0038 -4.7796 46 1 1.8510 -6.1661 -2.4415 47 1 3.6304 -6.1297 -2.0759 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086100639.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:16:05 Heat of formation + Delta-G solvation = 28.258966 kcal Electronic energy + Delta-G solvation = -27602.940979 eV Core-core repulsion = 23750.398608 eV Total energy + Delta-G solvation = -3852.542371 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.15157 -40.75047 -39.79471 -38.07196 -36.18283 -35.26393 -34.46494 -32.86067 -32.24100 -31.29619 -29.11549 -28.32640 -26.43454 -26.04860 -25.37703 -23.63780 -23.15521 -22.45951 -22.02660 -20.56386 -19.49798 -18.98753 -18.61392 -17.86760 -17.04942 -16.74939 -16.61044 -16.47953 -16.12628 -15.61915 -15.53216 -15.47929 -15.30946 -14.99754 -14.64570 -14.43131 -14.35398 -13.99386 -13.88335 -13.40590 -13.21518 -13.15434 -12.99253 -12.88867 -12.70827 -12.61319 -12.42372 -12.35132 -12.23893 -12.06323 -11.63037 -11.55664 -11.52463 -11.07380 -11.00998 -10.79536 -10.48229 -10.16826 -9.71987 -9.27114 -8.96011 -7.93230 -5.21426 -0.84455 -0.42201 0.82630 1.47822 1.50354 1.50738 1.56802 2.01538 2.18781 2.57729 3.02637 3.12424 3.38060 3.43260 3.49213 3.59526 3.72962 3.76575 3.80401 3.92284 4.08259 4.21745 4.27993 4.31238 4.37715 4.39481 4.44362 4.56130 4.58537 4.65258 4.72715 4.79024 4.82113 4.92606 4.99171 5.01217 5.04515 5.07288 5.18459 5.26311 5.35820 5.37440 5.42926 5.45999 5.49653 5.54303 5.75506 5.86169 6.28950 6.44592 6.81656 7.12407 7.34420 8.13669 8.34693 9.29998 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.016211 B = 0.001953 C = 0.001823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1726.769783 B =14334.711134 C =15351.554678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.193 3.807 3 N -0.506 5.506 4 C 0.124 3.876 5 C -0.127 4.127 6 C -0.075 4.075 7 C -0.122 4.122 8 C -0.085 4.085 9 C -0.135 4.135 10 C 0.003 3.997 11 C -0.207 4.207 12 C 0.560 3.440 13 O -0.561 6.561 14 N -0.706 5.706 15 C 0.139 3.861 16 C -0.095 4.095 17 H 0.125 0.875 18 C -0.137 4.137 19 C 0.142 3.858 20 H 0.082 0.918 21 N -0.731 5.731 22 C -0.242 4.242 23 H 0.080 0.920 24 C -0.081 4.081 25 N -0.972 5.972 26 Si 0.973 3.027 27 H -0.276 1.276 28 H -0.299 1.299 29 H -0.277 1.277 30 C -0.154 4.154 31 H 0.082 0.918 32 H 0.074 0.926 33 H 0.091 0.909 34 H 0.138 0.862 35 H 0.161 0.839 36 H 0.163 0.837 37 H 0.164 0.836 38 H 0.180 0.820 39 H 0.413 0.587 40 H 0.070 0.930 41 H 0.050 0.950 42 H 0.079 0.921 43 H 0.066 0.934 44 H 0.371 0.629 45 H 0.250 0.750 46 H 0.054 0.946 47 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.577 26.630 13.020 32.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.040 3.960 3 N -0.216 5.216 4 C 0.003 3.997 5 C -0.146 4.146 6 C -0.095 4.095 7 C -0.140 4.140 8 C -0.103 4.103 9 C -0.137 4.137 10 C -0.023 4.023 11 C -0.212 4.212 12 C 0.347 3.653 13 O -0.442 6.442 14 N -0.358 5.358 15 C 0.015 3.985 16 C -0.114 4.114 17 H 0.143 0.857 18 C -0.176 4.176 19 C 0.033 3.967 20 H 0.100 0.900 21 N -0.368 5.368 22 C -0.374 4.374 23 H 0.098 0.902 24 C -0.273 4.273 25 N -0.623 5.623 26 Si 0.802 3.198 27 H -0.202 1.202 28 H -0.226 1.226 29 H -0.204 1.204 30 C -0.195 4.195 31 H 0.101 0.899 32 H 0.092 0.908 33 H 0.109 0.891 34 H 0.156 0.844 35 H 0.179 0.821 36 H 0.180 0.820 37 H 0.181 0.819 38 H 0.197 0.803 39 H 0.251 0.749 40 H 0.089 0.911 41 H 0.068 0.932 42 H 0.098 0.902 43 H 0.085 0.915 44 H 0.203 0.797 45 H 0.058 0.942 46 H 0.073 0.927 47 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 12.489 27.326 13.019 32.744 hybrid contribution 0.190 -1.511 -0.964 1.802 sum 12.680 25.815 12.056 31.185 Atomic orbital electron populations 1.20998 0.87567 1.03592 1.04010 1.21696 0.97915 0.86886 0.89543 1.67882 1.09470 1.28327 1.15891 1.19480 0.88948 0.94735 0.96578 1.21014 0.95447 0.95850 1.02282 1.21420 0.92802 1.00704 0.94573 1.21408 1.02234 0.91626 0.98718 1.21452 0.91263 1.00627 0.97006 1.19038 0.96361 0.93118 1.05219 1.22379 0.92263 0.99135 0.88475 1.20697 0.95069 0.94235 1.11194 1.18142 0.86866 0.83903 0.76351 1.90739 1.14973 1.87388 1.51081 1.45778 1.11663 1.05039 1.73282 1.21297 0.94199 0.81387 1.01600 1.22483 0.99150 0.92285 0.97453 0.85723 1.23328 0.99343 0.95551 0.99414 1.21978 0.95942 0.89222 0.89578 0.90024 1.42642 1.06507 1.44131 1.43504 1.19698 0.91921 1.12514 1.13220 0.90235 1.25606 0.96756 1.02789 1.02173 1.69821 1.09124 1.43741 1.39605 0.85214 0.77352 0.78844 0.78375 1.20229 1.22577 1.20357 1.23738 1.01035 0.99089 0.95623 0.89948 0.90750 0.89109 0.84410 0.82142 0.81991 0.81883 0.80261 0.74908 0.91124 0.93164 0.90248 0.91530 0.79695 0.94173 0.92721 0.91241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.51 8.82 71.23 0.63 -1.88 16 2 C 0.19 4.80 6.82 43.28 0.30 5.09 16 3 N -0.51 -12.67 10.20 -175.85 -1.79 -14.47 16 4 C 0.12 2.58 6.61 40.28 0.27 2.85 16 5 C -0.13 -1.98 9.97 22.34 0.22 -1.76 16 6 C -0.08 -0.69 9.94 22.04 0.22 -0.47 16 7 C -0.12 -0.91 9.96 22.05 0.22 -0.69 16 8 C -0.09 -0.82 9.77 22.35 0.22 -0.60 16 9 C -0.14 -2.22 5.74 -21.29 -0.12 -2.34 16 10 C 0.00 0.05 9.38 23.01 0.22 0.27 16 11 C -0.21 -4.50 5.88 -20.00 -0.12 -4.61 16 12 C 0.56 13.57 7.69 86.76 0.67 14.24 16 13 O -0.56 -17.38 13.31 -3.93 -0.05 -17.43 16 14 N -0.71 -13.58 5.51 -466.05 -2.57 -16.15 16 15 C 0.14 3.18 5.51 86.38 0.48 3.66 16 16 C -0.09 -2.09 3.76 -10.27 -0.04 -2.13 16 17 H 0.12 1.96 8.14 -2.39 -0.02 1.95 16 18 C -0.14 -3.94 7.39 31.12 0.23 -3.71 16 19 C 0.14 5.13 4.48 45.52 0.20 5.34 16 20 H 0.08 2.83 8.10 -2.39 -0.02 2.81 16 21 N -0.73 -36.11 5.40 -320.44 -1.73 -37.84 16 22 C -0.24 -13.18 9.97 84.03 0.84 -12.34 16 23 H 0.08 4.09 7.83 -2.91 -0.02 4.06 16 24 C -0.08 -4.66 5.50 84.86 0.47 -4.19 16 25 N -0.97 -59.85 13.06 21.65 0.28 -59.57 16 26 Si 0.97 45.76 29.55 68.60 2.03 47.79 16 27 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 28 H -0.30 -14.35 7.11 99.48 0.71 -13.64 16 29 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 30 C -0.15 -4.60 7.43 31.12 0.23 -4.37 16 31 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 32 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 33 H 0.09 2.43 5.81 -2.39 -0.01 2.42 16 34 H 0.14 1.95 8.06 -2.91 -0.02 1.93 16 35 H 0.16 0.47 8.06 -2.91 -0.02 0.45 16 36 H 0.16 0.19 8.06 -2.91 -0.02 0.16 16 37 H 0.16 0.55 8.06 -2.91 -0.02 0.53 16 38 H 0.18 1.25 6.53 -2.91 -0.02 1.23 16 39 H 0.41 5.16 6.59 -92.71 -0.61 4.55 16 40 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 41 H 0.05 1.42 7.84 -2.39 -0.02 1.40 16 42 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 43 H 0.07 2.14 8.08 -2.39 -0.02 2.12 16 44 H 0.37 20.08 7.92 -92.71 -0.73 19.34 16 45 H 0.25 14.99 8.31 -92.70 -0.77 14.22 16 46 H 0.05 1.92 7.90 -2.39 -0.02 1.90 16 47 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 Total: -1.00 -75.36 388.95 0.95 -74.41 By element: Atomic # 1 Polarization: 31.22 SS G_CDS: -0.34 Total: 30.89 kcal Atomic # 6 Polarization: -12.75 SS G_CDS: 5.12 Total: -7.64 kcal Atomic # 7 Polarization: -122.22 SS G_CDS: -5.81 Total: -128.02 kcal Atomic # 8 Polarization: -17.38 SS G_CDS: -0.05 Total: -17.43 kcal Atomic # 14 Polarization: 45.76 SS G_CDS: 2.03 Total: 47.79 kcal Total: -75.36 0.95 -74.41 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086100639.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.670 kcal (2) G-P(sol) polarization free energy of solvation -75.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.411 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds