Wall clock time and date at job start Tue Mar 31 2020 22:16:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.39228 * 119.15279 * 2 1 4 4 C 1.36636 * 119.90426 * 179.97438 * 3 2 1 5 5 C 1.40796 * 118.15571 * 0.02562 * 4 3 2 6 6 C 1.40473 * 121.26062 * 180.02562 * 5 4 3 7 7 C 1.36322 * 120.08051 * 179.97438 * 6 5 4 8 8 C 1.38898 * 121.06073 * 0.02562 * 7 6 5 9 9 C 1.38715 * 120.72618 * 359.97438 * 8 7 6 10 10 C 1.47434 * 120.33401 * 180.02562 * 9 8 7 11 11 O 1.21603 * 120.00424 * 180.02562 * 10 9 8 12 12 N 1.34779 * 120.00129 * 0.02562 * 10 9 8 13 13 C 1.46495 * 120.00360 * 180.02562 * 12 10 9 14 14 C 1.53000 * 109.47702 * 180.02562 * 13 12 10 15 15 H 1.09004 * 112.84496 * 316.19683 * 14 13 12 16 16 C 1.53778 * 113.61203 * 87.49847 * 14 13 12 17 17 C 1.53783 * 87.07939 * 139.98924 * 16 14 13 18 18 H 1.08999 * 113.69545 * 89.12519 * 17 16 14 19 19 N 1.46505 * 113.61298 * 220.02260 * 17 16 14 20 20 C 1.36942 * 119.99762 * 252.49247 * 19 17 16 21 21 H 1.07998 * 119.99744 * 0.02562 * 20 19 17 22 22 C 1.38811 * 119.99623 * 179.97438 * 20 19 17 23 23 N 1.31618 * 119.99671 * 180.02562 * 22 20 19 24 24 Si 1.86792 * 120.00315 * 0.02562 * 22 20 19 25 25 H 1.48498 * 109.47281 * 89.99717 * 24 22 20 26 26 H 1.48496 * 109.47424 * 209.99795 * 24 22 20 27 27 H 1.48504 * 109.47008 * 330.00019 * 24 22 20 28 28 C 1.53777 * 113.62048 * 184.99877 * 14 13 12 29 29 C 1.41553 * 118.93906 * 359.97438 * 5 4 3 30 30 N 1.31225 * 119.15321 * 179.72564 * 2 1 3 31 31 H 1.09001 * 109.46953 * 89.99970 * 1 2 3 32 32 H 1.09000 * 109.47318 * 209.99568 * 1 2 3 33 33 H 1.09000 * 109.47161 * 330.00198 * 1 2 3 34 34 H 1.08000 * 120.05142 * 359.95155 * 3 2 1 35 35 H 1.08003 * 120.91879 * 179.97438 * 4 3 2 36 36 H 1.08001 * 119.96221 * 359.95274 * 6 5 4 37 37 H 1.08008 * 119.47068 * 179.97438 * 7 6 5 38 38 H 1.08002 * 119.64101 * 180.02562 * 8 7 6 39 39 H 0.97007 * 119.99768 * 0.02562 * 12 10 9 40 40 H 1.09004 * 109.47370 * 300.00347 * 13 12 10 41 41 H 1.08997 * 109.47163 * 60.00053 * 13 12 10 42 42 H 1.09003 * 113.62028 * 254.53016 * 16 14 13 43 43 H 1.09000 * 113.61430 * 25.43920 * 16 14 13 44 44 H 0.96997 * 120.00210 * 72.49344 * 19 17 16 45 45 H 0.96994 * 120.00282 * 179.97438 * 23 22 20 46 46 H 1.09001 * 113.61024 * 334.57341 * 28 14 13 47 47 H 1.09003 * 113.61306 * 105.38450 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1853 1.2159 0.0000 4 6 3.5515 1.2338 0.0005 5 6 4.2321 0.0013 0.0005 6 6 5.6357 -0.0564 0.0016 7 6 6.2699 -1.2631 0.0021 8 6 5.5501 -2.4510 0.0010 9 6 4.1630 -2.4392 -0.0001 10 6 3.4077 -3.7054 -0.0007 11 8 2.1918 -3.6881 -0.0021 12 7 4.0648 -4.8821 0.0004 13 6 3.3143 -6.1402 -0.0008 14 6 4.2917 -7.3173 0.0014 15 1 5.1211 -7.1799 -0.6923 16 6 4.7298 -7.7516 1.4101 17 6 4.6221 -9.2021 0.9109 18 1 5.5421 -9.5820 0.4667 19 7 4.0444 -10.1203 1.8956 20 6 4.8424 -11.0350 2.5295 21 1 5.8976 -11.0792 2.3037 22 6 4.2952 -11.9045 3.4629 23 7 5.0623 -12.7833 4.0725 24 14 2.4703 -11.8275 3.8538 25 1 1.7298 -12.7357 2.9417 26 1 2.2470 -12.2487 5.2602 27 1 1.9830 -10.4367 3.6703 28 6 3.6057 -8.6880 -0.1223 29 6 3.4788 -1.1971 0.0005 30 7 2.1463 -1.1460 0.0055 31 1 -0.3633 0.0000 -1.0277 32 1 -0.3634 -0.8900 0.5138 33 1 -0.3633 0.8900 0.5138 34 1 1.6324 2.1436 -0.0008 35 1 4.0943 2.1676 0.0001 36 1 6.2130 0.8564 0.0017 37 1 7.3495 -1.2959 0.0025 38 1 6.0762 -3.3943 0.0018 39 1 5.0347 -4.8960 0.0019 40 1 2.6854 -6.1890 0.8883 41 1 2.6882 -6.1890 -0.8917 42 1 5.7466 -7.4514 1.6631 43 1 4.0079 -7.5027 2.1879 44 1 3.0968 -10.0803 2.0986 45 1 4.6801 -13.3907 4.7250 46 1 2.5765 -8.6951 0.2365 47 1 3.7138 -9.1431 -1.1069 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086118351.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:16:26 Heat of formation + Delta-G solvation = 56.580799 kcal Electronic energy + Delta-G solvation = -27714.336067 eV Core-core repulsion = 23863.021823 eV Total energy + Delta-G solvation = -3851.314244 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.34812 -39.61206 -38.50204 -37.47366 -34.71444 -33.82203 -33.30963 -32.29812 -31.00211 -30.45453 -28.26300 -27.45500 -25.18532 -24.36947 -24.03841 -23.07855 -22.79004 -20.96246 -20.55545 -19.33738 -18.47603 -18.05175 -17.40500 -16.82691 -16.33796 -15.76725 -15.45962 -15.15780 -15.03925 -14.78790 -14.51310 -14.32274 -14.16402 -13.90754 -13.45736 -13.26888 -13.22794 -13.00728 -12.65397 -12.56035 -12.40442 -12.18620 -11.95771 -11.77308 -11.71080 -11.58363 -11.55487 -10.89119 -10.83481 -10.47079 -10.33821 -10.14436 -10.02594 -9.80014 -9.55148 -9.34338 -9.09115 -9.00742 -8.88619 -8.59918 -7.26033 -5.77900 -3.13212 -0.21494 0.42461 1.40595 2.37928 3.07146 3.09925 3.38859 3.42309 3.46524 3.81881 3.83653 4.14833 4.24962 4.38209 4.45192 4.59118 4.59195 4.67938 4.85955 4.87667 4.92271 4.97448 5.12459 5.16891 5.28950 5.32106 5.41036 5.44499 5.47861 5.51516 5.65156 5.67051 5.73968 5.76623 5.77969 5.82961 5.89812 5.93714 6.11263 6.19573 6.22286 6.25882 6.39570 6.44470 6.52453 6.70863 6.99975 7.48733 7.74656 7.98620 8.27790 8.42030 9.19981 9.92883 10.12800 11.40323 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.018138 B = 0.002034 C = 0.001923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1543.351793 B =13761.966529 C =14556.613948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C 0.159 3.841 3 C -0.172 4.172 4 C -0.056 4.056 5 C -0.118 4.118 6 C -0.070 4.070 7 C -0.128 4.128 8 C -0.061 4.061 9 C -0.108 4.108 10 C 0.549 3.451 11 O -0.500 6.500 12 N -0.726 5.726 13 C 0.135 3.865 14 C -0.127 4.127 15 H 0.091 0.909 16 C -0.161 4.161 17 C 0.172 3.828 18 H 0.084 0.916 19 N -0.737 5.737 20 C -0.247 4.247 21 H 0.091 0.909 22 C 0.004 3.996 23 N -0.933 5.933 24 Si 0.884 3.116 25 H -0.284 1.284 26 H -0.291 1.291 27 H -0.276 1.276 28 C -0.145 4.145 29 C 0.168 3.832 30 N -0.440 5.440 31 H 0.081 0.919 32 H 0.083 0.917 33 H 0.075 0.925 34 H 0.138 0.862 35 H 0.141 0.859 36 H 0.134 0.866 37 H 0.135 0.865 38 H 0.136 0.864 39 H 0.396 0.604 40 H 0.069 0.931 41 H 0.065 0.935 42 H 0.058 0.942 43 H 0.077 0.923 44 H 0.363 0.637 45 H 0.259 0.741 46 H 0.078 0.922 47 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.422 32.876 -12.135 35.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.006 3.994 3 C -0.192 4.192 4 C -0.082 4.082 5 C -0.120 4.120 6 C -0.089 4.089 7 C -0.146 4.146 8 C -0.082 4.082 9 C -0.112 4.112 10 C 0.335 3.665 11 O -0.375 6.375 12 N -0.379 5.379 13 C 0.012 3.988 14 C -0.146 4.146 15 H 0.109 0.891 16 C -0.202 4.202 17 C 0.060 3.940 18 H 0.102 0.898 19 N -0.377 5.377 20 C -0.377 4.377 21 H 0.108 0.892 22 C -0.192 4.192 23 N -0.581 5.581 24 Si 0.714 3.286 25 H -0.210 1.210 26 H -0.217 1.217 27 H -0.202 1.202 28 C -0.185 4.185 29 C 0.045 3.955 30 N -0.148 5.148 31 H 0.099 0.901 32 H 0.102 0.898 33 H 0.094 0.906 34 H 0.156 0.844 35 H 0.158 0.842 36 H 0.152 0.848 37 H 0.153 0.847 38 H 0.154 0.846 39 H 0.231 0.769 40 H 0.087 0.913 41 H 0.083 0.917 42 H 0.077 0.923 43 H 0.096 0.904 44 H 0.196 0.804 45 H 0.070 0.930 46 H 0.097 0.903 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -1.539 31.805 -12.019 34.035 hybrid contribution -0.166 0.849 0.431 0.967 sum -1.705 32.654 -11.588 34.691 Atomic orbital electron populations 1.20800 0.88491 1.03823 1.03391 1.21732 0.97605 0.88045 0.91970 1.21796 0.95081 0.99441 1.02896 1.21456 0.94504 0.97015 0.95212 1.18829 0.94809 0.94021 1.04344 1.21164 0.92552 0.98749 0.96409 1.20846 1.00735 0.91882 1.01167 1.21490 0.92526 0.99277 0.94858 1.19949 0.93156 0.92611 1.05510 1.17924 0.87632 0.83050 0.77906 1.90854 1.12701 1.86893 1.47013 1.45984 1.10242 1.05722 1.75983 1.21404 0.94158 0.81133 1.02131 1.22641 0.98553 0.93597 0.99816 0.89121 1.23917 1.00848 1.00715 0.94687 1.21509 0.95391 0.87942 0.89117 0.89806 1.42770 1.07642 1.40271 1.47013 1.19136 0.93375 1.08713 1.16499 0.89151 1.24699 0.97373 0.98097 0.99030 1.69701 1.34415 1.23369 1.30595 0.86551 0.86751 0.77609 0.77652 1.21022 1.21723 1.20250 1.23463 1.00139 0.94290 1.00593 1.18576 0.89401 0.91339 0.96207 1.68174 1.07703 1.27728 1.11170 0.90056 0.89838 0.90600 0.84430 0.84152 0.84847 0.84665 0.84637 0.76882 0.91299 0.91674 0.92333 0.90436 0.80436 0.93049 0.90325 0.91618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.84 10.15 36.01 0.37 -0.47 16 2 C 0.16 1.67 6.78 -82.48 -0.56 1.11 16 3 C -0.17 -1.30 9.64 -39.79 -0.38 -1.68 16 4 C -0.06 -0.40 9.89 -39.19 -0.39 -0.79 16 5 C -0.12 -1.11 5.74 -106.83 -0.61 -1.72 16 6 C -0.07 -0.48 9.75 -39.43 -0.38 -0.86 16 7 C -0.13 -0.84 9.93 -40.03 -0.40 -1.24 16 8 C -0.06 -0.51 9.52 -39.16 -0.37 -0.88 16 9 C -0.11 -1.31 5.91 -104.61 -0.62 -1.93 16 10 C 0.55 7.88 7.76 -12.51 -0.10 7.78 16 11 O -0.50 -9.11 15.19 5.27 0.08 -9.03 16 12 N -0.73 -8.62 5.51 -61.38 -0.34 -8.95 16 13 C 0.13 1.77 5.51 -4.04 -0.02 1.75 16 14 C -0.13 -1.62 3.75 -89.81 -0.34 -1.95 16 15 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 16 C -0.16 -2.54 7.43 -25.92 -0.19 -2.74 16 17 C 0.17 3.18 4.48 -67.12 -0.30 2.88 16 18 H 0.08 1.56 8.10 -51.93 -0.42 1.14 16 19 N -0.74 -17.37 5.21 -52.63 -0.27 -17.64 16 20 C -0.25 -6.96 10.45 -15.06 -0.16 -7.12 16 21 H 0.09 2.70 8.06 -52.49 -0.42 2.28 16 22 C 0.00 0.11 5.50 -17.43 -0.10 0.02 16 23 N -0.93 -29.38 13.97 55.49 0.78 -28.60 16 24 Si 0.88 22.34 27.74 -169.99 -4.71 17.63 16 25 H -0.28 -7.11 7.11 56.52 0.40 -6.71 16 26 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 27 H -0.28 -6.62 6.52 56.52 0.37 -6.25 16 28 C -0.15 -2.17 7.39 -25.92 -0.19 -2.36 16 29 C 0.17 2.15 6.61 -84.58 -0.56 1.59 16 30 N -0.44 -6.17 8.33 -7.01 -0.06 -6.23 16 31 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.08 0.38 8.07 -51.93 -0.42 -0.04 16 34 H 0.14 0.59 8.06 -52.49 -0.42 0.17 16 35 H 0.14 0.52 8.06 -52.48 -0.42 0.10 16 36 H 0.13 0.49 8.06 -52.49 -0.42 0.07 16 37 H 0.14 0.50 8.06 -52.48 -0.42 0.08 16 38 H 0.14 0.78 6.37 -52.49 -0.33 0.45 16 39 H 0.40 3.56 6.50 -40.82 -0.27 3.29 16 40 H 0.07 1.03 7.84 -51.93 -0.41 0.62 16 41 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 42 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 43 H 0.08 1.35 7.89 -51.93 -0.41 0.94 16 44 H 0.36 8.47 5.78 -40.82 -0.24 8.24 16 45 H 0.26 7.79 8.31 -40.82 -0.34 7.45 16 46 H 0.08 1.21 8.08 -51.93 -0.42 0.79 16 47 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 388.95 15.07 5.86 5.86 Total: -1.00 -36.90 388.95 -10.70 -47.61 By element: Atomic # 1 Polarization: 14.73 SS G_CDS: -6.73 Total: 8.00 kcal Atomic # 6 Polarization: -3.33 SS G_CDS: -5.31 Total: -8.64 kcal Atomic # 7 Polarization: -61.53 SS G_CDS: 0.10 Total: -61.42 kcal Atomic # 8 Polarization: -9.11 SS G_CDS: 0.08 Total: -9.03 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -4.71 Total: 17.63 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -36.90 -10.70 -47.61 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086118351.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.187 kcal (2) G-P(sol) polarization free energy of solvation -36.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.606 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds