Wall clock time and date at job start Tue Mar 31 2020 22:16:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.39228 * 119.15279 * 2 1 4 4 C 1.36636 * 119.90426 * 179.97438 * 3 2 1 5 5 C 1.40796 * 118.15571 * 0.02562 * 4 3 2 6 6 C 1.40473 * 121.26062 * 180.02562 * 5 4 3 7 7 C 1.36322 * 120.08051 * 179.97438 * 6 5 4 8 8 C 1.38898 * 121.06073 * 0.02562 * 7 6 5 9 9 C 1.38715 * 120.72618 * 359.97438 * 8 7 6 10 10 C 1.47434 * 120.33401 * 180.02562 * 9 8 7 11 11 O 1.21603 * 120.00424 * 180.02562 * 10 9 8 12 12 N 1.34779 * 120.00129 * 0.02562 * 10 9 8 13 13 C 1.46495 * 120.00360 * 180.02562 * 12 10 9 14 14 C 1.53000 * 109.47702 * 180.02562 * 13 12 10 15 15 H 1.09004 * 112.84496 * 316.19683 * 14 13 12 16 16 C 1.53778 * 113.61203 * 87.49847 * 14 13 12 17 17 C 1.53783 * 87.07939 * 139.98924 * 16 14 13 18 18 H 1.08999 * 113.69545 * 89.12519 * 17 16 14 19 19 N 1.46505 * 113.61298 * 220.02260 * 17 16 14 20 20 C 1.36942 * 119.99762 * 252.49247 * 19 17 16 21 21 H 1.07998 * 119.99744 * 0.02562 * 20 19 17 22 22 C 1.38811 * 119.99623 * 179.97438 * 20 19 17 23 23 N 1.31618 * 119.99671 * 180.02562 * 22 20 19 24 24 Si 1.86792 * 120.00315 * 0.02562 * 22 20 19 25 25 H 1.48498 * 109.47281 * 89.99717 * 24 22 20 26 26 H 1.48496 * 109.47424 * 209.99795 * 24 22 20 27 27 H 1.48504 * 109.47008 * 330.00019 * 24 22 20 28 28 C 1.53777 * 113.62048 * 184.99877 * 14 13 12 29 29 C 1.41553 * 118.93906 * 359.97438 * 5 4 3 30 30 N 1.31225 * 119.15321 * 179.72564 * 2 1 3 31 31 H 1.09001 * 109.46953 * 89.99970 * 1 2 3 32 32 H 1.09000 * 109.47318 * 209.99568 * 1 2 3 33 33 H 1.09000 * 109.47161 * 330.00198 * 1 2 3 34 34 H 1.08000 * 120.05142 * 359.95155 * 3 2 1 35 35 H 1.08003 * 120.91879 * 179.97438 * 4 3 2 36 36 H 1.08001 * 119.96221 * 359.95274 * 6 5 4 37 37 H 1.08008 * 119.47068 * 179.97438 * 7 6 5 38 38 H 1.08002 * 119.64101 * 180.02562 * 8 7 6 39 39 H 0.97007 * 119.99768 * 0.02562 * 12 10 9 40 40 H 1.09004 * 109.47370 * 300.00347 * 13 12 10 41 41 H 1.08997 * 109.47163 * 60.00053 * 13 12 10 42 42 H 1.09003 * 113.62028 * 254.53016 * 16 14 13 43 43 H 1.09000 * 113.61430 * 25.43920 * 16 14 13 44 44 H 0.96997 * 120.00210 * 72.49344 * 19 17 16 45 45 H 0.96994 * 120.00282 * 179.97438 * 23 22 20 46 46 H 1.09001 * 113.61024 * 334.57341 * 28 14 13 47 47 H 1.09003 * 113.61306 * 105.38450 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1853 1.2159 0.0000 4 6 3.5515 1.2338 0.0005 5 6 4.2321 0.0013 0.0005 6 6 5.6357 -0.0564 0.0016 7 6 6.2699 -1.2631 0.0021 8 6 5.5501 -2.4510 0.0010 9 6 4.1630 -2.4392 -0.0001 10 6 3.4077 -3.7054 -0.0007 11 8 2.1918 -3.6881 -0.0021 12 7 4.0648 -4.8821 0.0004 13 6 3.3143 -6.1402 -0.0008 14 6 4.2917 -7.3173 0.0014 15 1 5.1211 -7.1799 -0.6923 16 6 4.7298 -7.7516 1.4101 17 6 4.6221 -9.2021 0.9109 18 1 5.5421 -9.5820 0.4667 19 7 4.0444 -10.1203 1.8956 20 6 4.8424 -11.0350 2.5295 21 1 5.8976 -11.0792 2.3037 22 6 4.2952 -11.9045 3.4629 23 7 5.0623 -12.7833 4.0725 24 14 2.4703 -11.8275 3.8538 25 1 1.7298 -12.7357 2.9417 26 1 2.2470 -12.2487 5.2602 27 1 1.9830 -10.4367 3.6703 28 6 3.6057 -8.6880 -0.1223 29 6 3.4788 -1.1971 0.0005 30 7 2.1463 -1.1460 0.0055 31 1 -0.3633 0.0000 -1.0277 32 1 -0.3634 -0.8900 0.5138 33 1 -0.3633 0.8900 0.5138 34 1 1.6324 2.1436 -0.0008 35 1 4.0943 2.1676 0.0001 36 1 6.2130 0.8564 0.0017 37 1 7.3495 -1.2959 0.0025 38 1 6.0762 -3.3943 0.0018 39 1 5.0347 -4.8960 0.0019 40 1 2.6854 -6.1890 0.8883 41 1 2.6882 -6.1890 -0.8917 42 1 5.7466 -7.4514 1.6631 43 1 4.0079 -7.5027 2.1879 44 1 3.0968 -10.0803 2.0986 45 1 4.6801 -13.3907 4.7250 46 1 2.5765 -8.6951 0.2365 47 1 3.7138 -9.1431 -1.1069 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086118351.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:16:26 Heat of formation + Delta-G solvation = 31.323962 kcal Electronic energy + Delta-G solvation = -27715.431285 eV Core-core repulsion = 23863.021823 eV Total energy + Delta-G solvation = -3852.409462 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.01995 -40.67763 -39.73270 -38.13421 -36.11777 -35.04508 -34.43311 -32.95743 -32.75026 -31.38742 -28.93915 -28.61194 -26.48017 -25.72865 -24.92804 -24.16966 -23.39205 -22.37565 -21.54869 -20.72311 -19.39378 -19.07961 -18.84461 -17.60596 -17.15423 -16.80426 -16.49993 -16.43881 -16.04055 -15.81634 -15.68341 -15.51553 -15.00247 -14.78272 -14.69846 -14.43817 -14.04716 -13.96873 -13.83993 -13.77939 -13.26856 -13.18953 -13.14559 -13.03898 -12.97263 -12.71676 -12.31912 -12.29087 -12.14584 -11.90890 -11.70292 -11.61682 -11.49665 -11.16891 -11.01706 -10.87091 -10.13358 -10.08799 -9.69088 -9.27430 -9.25301 -8.03457 -5.35402 -0.83593 -0.18534 0.75004 1.36873 1.38607 1.45764 1.76467 2.13108 2.21090 2.46846 3.13018 3.22606 3.26796 3.53544 3.58530 3.68596 3.70697 3.80270 3.86172 3.96638 3.96817 4.08337 4.18584 4.27029 4.35856 4.37170 4.43594 4.54050 4.61941 4.68935 4.73828 4.78871 4.94167 4.94388 4.95480 4.98232 5.02390 5.07710 5.15708 5.20624 5.21682 5.32348 5.36711 5.44229 5.58735 5.65794 5.77902 5.84331 6.22759 6.57382 7.07345 7.08992 7.30051 7.85979 8.03411 9.18009 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.018138 B = 0.002034 C = 0.001923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1543.351793 B =13761.966529 C =14556.613948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.139 3.861 3 C -0.178 4.178 4 C -0.047 4.047 5 C -0.138 4.138 6 C -0.054 4.054 7 C -0.134 4.134 8 C -0.043 4.043 9 C -0.156 4.156 10 C 0.545 3.455 11 O -0.554 6.554 12 N -0.714 5.714 13 C 0.141 3.859 14 C -0.096 4.096 15 H 0.123 0.877 16 C -0.155 4.155 17 C 0.147 3.853 18 H 0.082 0.918 19 N -0.745 5.745 20 C -0.229 4.229 21 H 0.062 0.938 22 C -0.066 4.066 23 N -0.983 5.983 24 Si 0.952 3.048 25 H -0.278 1.278 26 H -0.297 1.297 27 H -0.257 1.257 28 C -0.137 4.137 29 C 0.136 3.864 30 N -0.500 5.500 31 H 0.087 0.913 32 H 0.056 0.944 33 H 0.106 0.894 34 H 0.173 0.827 35 H 0.184 0.816 36 H 0.174 0.826 37 H 0.173 0.827 38 H 0.159 0.841 39 H 0.412 0.588 40 H 0.046 0.954 41 H 0.063 0.937 42 H 0.069 0.931 43 H 0.060 0.940 44 H 0.364 0.636 45 H 0.257 0.743 46 H 0.073 0.927 47 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.904 36.655 -13.463 39.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.012 4.012 3 C -0.197 4.197 4 C -0.072 4.072 5 C -0.140 4.140 6 C -0.072 4.072 7 C -0.151 4.151 8 C -0.063 4.063 9 C -0.160 4.160 10 C 0.333 3.667 11 O -0.432 6.432 12 N -0.368 5.368 13 C 0.017 3.983 14 C -0.115 4.115 15 H 0.141 0.859 16 C -0.195 4.195 17 C 0.039 3.961 18 H 0.100 0.900 19 N -0.386 5.386 20 C -0.360 4.360 21 H 0.080 0.920 22 C -0.258 4.258 23 N -0.634 5.634 24 Si 0.780 3.220 25 H -0.204 1.204 26 H -0.224 1.224 27 H -0.182 1.182 28 C -0.176 4.176 29 C 0.013 3.987 30 N -0.210 5.210 31 H 0.106 0.894 32 H 0.075 0.925 33 H 0.125 0.875 34 H 0.190 0.810 35 H 0.201 0.799 36 H 0.192 0.808 37 H 0.190 0.810 38 H 0.176 0.824 39 H 0.250 0.750 40 H 0.064 0.936 41 H 0.082 0.918 42 H 0.087 0.913 43 H 0.079 0.921 44 H 0.197 0.803 45 H 0.066 0.934 46 H 0.092 0.908 47 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -0.180 35.637 -13.398 38.073 hybrid contribution -0.436 -0.207 0.781 0.918 sum -0.617 35.430 -12.617 37.615 Atomic orbital electron populations 1.20854 0.87627 1.03955 1.03815 1.22251 0.98632 0.88705 0.91659 1.22114 0.95748 0.99424 1.02453 1.21985 0.94547 0.97752 0.92913 1.19187 0.96189 0.93758 1.04877 1.21680 0.91501 1.00582 0.93453 1.21295 1.02461 0.90984 1.00404 1.21849 0.91037 1.01379 0.92083 1.19912 0.94618 0.91368 1.10078 1.18437 0.87305 0.84292 0.76674 1.90810 1.15004 1.87693 1.49739 1.45823 1.10932 1.04754 1.75246 1.21213 0.94155 0.81874 1.01034 1.22481 0.98707 0.92185 0.98152 0.85907 1.23741 1.01188 0.98532 0.96082 1.21932 0.96504 0.88152 0.89548 0.89988 1.42826 1.07368 1.40472 1.47917 1.19142 0.92639 1.08650 1.15603 0.92015 1.25484 1.02103 0.98432 0.99751 1.69871 1.36536 1.24947 1.32029 0.85453 0.81172 0.78534 0.76882 1.20395 1.22360 1.18230 1.23361 0.98982 0.95115 1.00145 1.18974 0.89558 0.92915 0.97299 1.68108 1.09162 1.29910 1.13781 0.89438 0.92522 0.87509 0.80987 0.79916 0.80834 0.80955 0.82372 0.75027 0.93579 0.91841 0.91257 0.92140 0.80299 0.93424 0.90802 0.89765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.73 10.15 71.24 0.72 -1.00 16 2 C 0.14 3.00 6.78 42.89 0.29 3.29 16 3 C -0.18 -2.36 9.64 22.13 0.21 -2.14 16 4 C -0.05 -0.53 9.89 22.52 0.22 -0.31 16 5 C -0.14 -2.33 5.74 -21.29 -0.12 -2.45 16 6 C -0.05 -0.52 9.75 22.37 0.22 -0.30 16 7 C -0.13 -1.23 9.93 21.98 0.22 -1.01 16 8 C -0.04 -0.63 9.52 22.54 0.21 -0.41 16 9 C -0.16 -3.81 5.91 -19.86 -0.12 -3.93 16 10 C 0.55 16.28 7.76 86.67 0.67 16.95 16 11 O -0.55 -21.77 15.19 -4.04 -0.06 -21.83 16 12 N -0.71 -16.56 5.51 -466.37 -2.57 -19.12 16 13 C 0.14 3.62 5.51 86.38 0.48 4.10 16 14 C -0.10 -2.25 3.75 -10.27 -0.04 -2.29 16 15 H 0.12 2.19 8.14 -2.39 -0.02 2.17 16 16 C -0.15 -4.70 7.43 31.12 0.23 -4.47 16 17 C 0.15 5.31 4.48 45.52 0.20 5.51 16 18 H 0.08 2.98 8.10 -2.39 -0.02 2.96 16 19 N -0.75 -34.91 5.21 -320.44 -1.67 -36.58 16 20 C -0.23 -13.11 10.45 84.03 0.88 -12.23 16 21 H 0.06 3.81 8.06 -2.91 -0.02 3.79 16 22 C -0.07 -3.97 5.50 84.86 0.47 -3.51 16 23 N -0.98 -63.67 13.97 21.65 0.30 -63.37 16 24 Si 0.95 46.81 27.74 68.60 1.90 48.71 16 25 H -0.28 -13.30 7.11 99.48 0.71 -12.59 16 26 H -0.30 -14.79 7.11 99.48 0.71 -14.08 16 27 H -0.26 -11.67 6.52 99.48 0.65 -11.03 16 28 C -0.14 -3.84 7.39 31.12 0.23 -3.61 16 29 C 0.14 3.54 6.61 40.61 0.27 3.81 16 30 N -0.50 -15.00 8.33 -176.10 -1.47 -16.47 16 31 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 32 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 33 H 0.11 0.98 8.07 -2.39 -0.02 0.96 16 34 H 0.17 0.91 8.06 -2.91 -0.02 0.89 16 35 H 0.18 0.39 8.06 -2.91 -0.02 0.37 16 36 H 0.17 0.22 8.06 -2.91 -0.02 0.20 16 37 H 0.17 0.31 8.06 -2.91 -0.02 0.29 16 38 H 0.16 1.34 6.37 -2.91 -0.02 1.33 16 39 H 0.41 6.58 6.50 -92.70 -0.60 5.97 16 40 H 0.05 1.41 7.84 -2.38 -0.02 1.39 16 41 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 42 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 43 H 0.06 2.07 7.89 -2.39 -0.02 2.05 16 44 H 0.36 16.71 5.78 -92.71 -0.54 16.17 16 45 H 0.26 15.89 8.31 -92.71 -0.77 15.12 16 46 H 0.07 2.18 8.08 -2.39 -0.02 2.16 16 47 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 Total: -1.00 -87.94 388.95 1.50 -86.45 By element: Atomic # 1 Polarization: 26.41 SS G_CDS: -0.19 Total: 26.22 kcal Atomic # 6 Polarization: -9.25 SS G_CDS: 5.25 Total: -4.00 kcal Atomic # 7 Polarization: -130.13 SS G_CDS: -5.40 Total: -135.54 kcal Atomic # 8 Polarization: -21.77 SS G_CDS: -0.06 Total: -21.83 kcal Atomic # 14 Polarization: 46.81 SS G_CDS: 1.90 Total: 48.71 kcal Total: -87.94 1.50 -86.45 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086118351.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.770 kcal (2) G-P(sol) polarization free energy of solvation -87.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.446 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds