Wall clock time and date at job start Tue Mar 31 2020 22:16:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.39315 * 119.11339 * 2 1 4 4 C 1.36585 * 119.90398 * 180.02562 * 3 2 1 5 5 C 1.40891 * 118.15759 * 359.97438 * 4 3 2 6 6 C 1.40176 * 121.21461 * 180.02562 * 5 4 3 7 7 C 1.38553 * 119.40109 * 180.02562 * 6 5 4 8 8 C 1.47767 * 119.80622 * 179.97438 * 7 6 5 9 9 O 1.21561 * 120.00048 * 359.96106 * 8 7 6 10 10 N 1.34781 * 119.99884 * 179.97438 * 8 7 6 11 11 C 1.46494 * 120.00047 * 180.02562 * 10 8 7 12 12 C 1.52993 * 109.47302 * 180.02562 * 11 10 8 13 13 H 1.08995 * 112.85183 * 45.32486 * 12 11 10 14 14 C 1.53779 * 113.61595 * 176.53029 * 12 11 10 15 15 C 1.53774 * 87.08407 * 139.97836 * 14 12 11 16 16 H 1.08999 * 113.61657 * 89.20001 * 15 14 12 17 17 N 1.46507 * 113.61284 * 220.01696 * 15 14 12 18 18 C 1.36939 * 119.99754 * 204.99639 * 17 15 14 19 19 H 1.08005 * 120.00060 * 0.02562 * 18 17 15 20 20 C 1.38814 * 119.99730 * 180.02562 * 18 17 15 21 21 N 1.31617 * 120.00170 * 0.02562 * 20 18 17 22 22 Si 1.86807 * 119.99863 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47124 * 89.99936 * 22 20 18 24 24 H 1.48495 * 109.47106 * 210.00245 * 22 20 18 25 25 H 1.48504 * 109.46776 * 329.99988 * 22 20 18 26 26 C 1.53792 * 113.61236 * 274.13308 * 12 11 10 27 27 C 1.40632 * 120.38562 * 359.94140 * 7 6 5 28 28 C 1.35704 * 120.92439 * 0.05652 * 27 7 6 29 29 C 1.40746 * 120.11288 * 359.96457 * 28 27 7 30 30 N 1.31115 * 119.11840 * 179.97438 * 2 1 3 31 31 H 1.08997 * 109.47394 * 90.00195 * 1 2 3 32 32 H 1.09001 * 109.46913 * 209.99914 * 1 2 3 33 33 H 1.09006 * 109.47144 * 330.00149 * 1 2 3 34 34 H 1.08000 * 120.04971 * 0.27126 * 3 2 1 35 35 H 1.08003 * 120.92004 * 180.02562 * 4 3 2 36 36 H 1.08002 * 120.30270 * 359.95514 * 6 5 4 37 37 H 0.96995 * 119.99863 * 359.97438 * 10 8 7 38 38 H 1.09003 * 109.47206 * 299.99780 * 11 10 8 39 39 H 1.09003 * 109.47466 * 59.99017 * 11 10 8 40 40 H 1.09007 * 113.61406 * 254.52677 * 14 12 11 41 41 H 1.09004 * 113.61796 * 25.42458 * 14 12 11 42 42 H 0.96994 * 120.00095 * 25.00085 * 17 15 14 43 43 H 0.96999 * 120.00192 * 179.97438 * 21 20 18 44 44 H 1.08996 * 113.61302 * 334.56526 * 26 12 11 45 45 H 1.09001 * 113.61155 * 105.46854 * 26 12 11 46 46 H 1.08005 * 119.53399 * 180.02562 * 27 7 6 47 47 H 1.08000 * 119.93839 * 179.97438 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1848 1.2171 0.0000 4 6 3.5505 1.2360 -0.0005 5 6 4.2325 0.0031 -0.0005 6 6 5.6331 -0.0523 -0.0005 7 6 6.2650 -1.2854 -0.0010 8 6 7.7411 -1.3542 -0.0016 9 8 8.3973 -0.3310 -0.0023 10 7 8.3599 -2.5516 -0.0016 11 6 9.8232 -2.6199 -0.0016 12 6 10.2654 -4.0846 -0.0022 13 1 9.7117 -4.6936 -0.7167 14 6 11.7898 -4.2678 -0.0875 15 6 11.6307 -5.4092 0.9306 16 1 11.4517 -6.3816 0.4720 17 7 12.6889 -5.4439 1.9434 18 6 12.9946 -6.6204 2.5740 19 1 12.4560 -7.5227 2.3245 20 6 13.9968 -6.6532 3.5339 21 7 14.6528 -5.5535 3.8383 22 14 14.4144 -8.2582 4.3937 23 1 15.4680 -8.9708 3.6272 24 1 14.9079 -7.9715 5.7646 25 1 13.1992 -9.1081 4.4726 26 6 10.3462 -4.7043 1.4030 27 6 5.5099 -2.4717 -0.0003 28 6 4.1533 -2.4349 -0.0003 29 6 3.4805 -1.1986 -0.0002 30 7 2.1450 -1.1454 0.0005 31 1 -0.3634 0.0000 -1.0276 32 1 -0.3633 -0.8900 0.5138 33 1 -0.3634 0.8900 0.5138 34 1 1.6312 2.1445 0.0044 35 1 4.0927 2.1701 -0.0001 36 1 6.2145 0.8579 -0.0012 37 1 7.8362 -3.3681 -0.0008 38 1 10.2101 -2.1237 -0.8916 39 1 10.2102 -2.1235 0.8883 40 1 12.1355 -4.6008 -1.0662 41 1 12.3540 -3.4171 0.2948 42 1 13.1728 -4.6337 2.1672 43 1 15.3529 -5.5764 4.5093 44 1 10.5149 -3.9731 2.1936 45 1 9.5279 -5.3890 1.6259 46 1 6.0167 -3.4255 -0.0003 47 1 3.5891 -3.3558 -0.0001 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086229101.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:16:37 Heat of formation + Delta-G solvation = 42.610755 kcal Electronic energy + Delta-G solvation = -27056.714501 eV Core-core repulsion = 23204.794471 eV Total energy + Delta-G solvation = -3851.920030 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.35742 -39.93930 -38.54504 -37.26335 -34.84655 -33.95876 -33.34153 -32.47877 -30.50265 -30.32274 -28.83758 -27.09968 -25.10879 -24.34596 -24.13561 -23.36304 -22.46301 -21.08751 -21.03266 -19.22253 -18.48509 -18.19166 -17.04884 -16.88797 -16.30930 -15.87240 -15.50270 -15.13679 -14.92651 -14.84378 -14.66264 -14.25472 -14.12998 -13.84828 -13.59819 -13.56506 -13.40602 -13.22257 -12.92538 -12.68762 -12.46444 -11.97771 -11.86737 -11.82067 -11.64395 -11.40489 -11.24134 -11.02755 -10.85368 -10.54638 -10.32673 -10.15949 -9.97735 -9.93167 -9.84196 -9.51071 -9.21226 -9.06054 -8.87810 -8.64967 -6.97228 -5.79069 -3.08007 -0.18053 0.24493 1.49605 2.05876 3.00576 3.05846 3.42215 3.47353 3.49182 3.67580 3.69793 4.10456 4.19188 4.32819 4.41056 4.56966 4.57640 4.66954 4.74342 4.92171 4.95361 4.98886 5.04462 5.09686 5.20543 5.34169 5.42780 5.45235 5.45740 5.49078 5.58242 5.59015 5.78559 5.80325 5.84372 5.88389 5.93310 6.06839 6.07986 6.21972 6.28925 6.32440 6.34654 6.41923 6.57696 6.80932 7.09902 7.37315 7.47473 7.68230 8.06089 8.39431 9.50534 10.08792 10.42923 11.43259 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.022839 B = 0.001656 C = 0.001604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1225.682270 B =16902.387710 C =17455.871821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C 0.167 3.833 3 C -0.178 4.178 4 C -0.042 4.042 5 C -0.120 4.120 6 C -0.023 4.023 7 C -0.134 4.134 8 C 0.555 3.445 9 O -0.539 6.539 10 N -0.718 5.718 11 C 0.131 3.869 12 C -0.128 4.128 13 H 0.088 0.912 14 C -0.142 4.142 15 C 0.166 3.834 16 H 0.075 0.925 17 N -0.713 5.713 18 C -0.245 4.245 19 H 0.071 0.929 20 C -0.013 4.013 21 N -0.932 5.932 22 Si 0.907 3.093 23 H -0.289 1.289 24 H -0.291 1.291 25 H -0.282 1.282 26 C -0.162 4.162 27 C -0.073 4.073 28 C -0.099 4.099 29 C 0.150 3.850 30 N -0.481 5.481 31 H 0.082 0.918 32 H 0.080 0.920 33 H 0.078 0.922 34 H 0.140 0.860 35 H 0.144 0.856 36 H 0.146 0.854 37 H 0.400 0.600 38 H 0.066 0.934 39 H 0.072 0.928 40 H 0.062 0.938 41 H 0.081 0.919 42 H 0.385 0.615 43 H 0.256 0.744 44 H 0.078 0.922 45 H 0.054 0.946 46 H 0.135 0.865 47 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.405 13.077 -11.443 33.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.014 3.986 3 C -0.198 4.198 4 C -0.068 4.068 5 C -0.122 4.122 6 C -0.043 4.043 7 C -0.137 4.137 8 C 0.342 3.658 9 O -0.417 6.417 10 N -0.369 5.369 11 C 0.009 3.991 12 C -0.147 4.147 13 H 0.107 0.893 14 C -0.182 4.182 15 C 0.054 3.946 16 H 0.093 0.907 17 N -0.350 5.350 18 C -0.376 4.376 19 H 0.089 0.911 20 C -0.209 4.209 21 N -0.580 5.580 22 Si 0.738 3.262 23 H -0.217 1.217 24 H -0.218 1.218 25 H -0.207 1.207 26 C -0.203 4.203 27 C -0.093 4.093 28 C -0.118 4.118 29 C 0.028 3.972 30 N -0.190 5.190 31 H 0.101 0.899 32 H 0.099 0.901 33 H 0.097 0.903 34 H 0.158 0.842 35 H 0.162 0.838 36 H 0.163 0.837 37 H 0.235 0.765 38 H 0.085 0.915 39 H 0.090 0.910 40 H 0.080 0.920 41 H 0.099 0.901 42 H 0.219 0.781 43 H 0.066 0.934 44 H 0.097 0.903 45 H 0.073 0.927 46 H 0.153 0.847 47 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -28.214 12.742 -11.342 32.970 hybrid contribution 0.651 -0.175 0.624 0.918 sum -27.564 12.567 -10.718 32.133 Atomic orbital electron populations 1.20822 0.88419 1.03899 1.03479 1.21592 0.97310 0.88196 0.91464 1.21745 0.95000 0.99393 1.03658 1.21585 0.94528 0.97345 0.93340 1.18801 0.94347 0.94379 1.04668 1.21452 0.92262 0.98135 0.92461 1.19982 0.93399 0.94138 1.06204 1.18170 0.87022 0.83880 0.76760 1.90786 1.66731 1.34200 1.49988 1.45968 1.08477 1.07910 1.74511 1.21491 0.78077 0.97223 1.02352 1.22650 0.98232 0.93933 0.99917 0.89341 1.23442 0.93260 1.00994 1.00457 1.21550 0.88488 0.95073 0.89534 0.90660 1.42412 1.39574 1.09801 1.43250 1.19309 1.14514 0.88394 1.15419 0.91086 1.24770 0.98983 0.97156 0.99974 1.69659 1.26394 1.26141 1.35776 0.86191 0.78129 0.82950 0.78915 1.21680 1.21764 1.20747 1.23985 1.01320 1.00366 0.94598 1.20977 0.93837 0.97685 0.96794 1.20670 0.93712 0.96663 1.00713 1.18965 0.89121 0.92904 0.96201 1.67908 1.08303 1.28796 1.14007 0.89916 0.90101 0.90321 0.84239 0.83849 0.83652 0.76469 0.91526 0.90964 0.91951 0.90070 0.78060 0.93444 0.90323 0.92743 0.84731 0.84049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.49 10.14 36.01 0.37 -0.12 16 2 C 0.17 1.29 6.78 -82.50 -0.56 0.73 16 3 C -0.18 -1.13 9.64 -39.78 -0.38 -1.51 16 4 C -0.04 -0.31 9.89 -39.18 -0.39 -0.69 16 5 C -0.12 -1.15 5.74 -106.82 -0.61 -1.76 16 6 C -0.02 -0.24 9.35 -38.74 -0.36 -0.60 16 7 C -0.13 -1.43 5.87 -104.98 -0.62 -2.04 16 8 C 0.55 7.13 7.77 -12.36 -0.10 7.03 16 9 O -0.54 -8.81 16.31 5.31 0.09 -8.73 16 10 N -0.72 -8.07 5.50 -61.28 -0.34 -8.41 16 11 C 0.13 1.69 5.50 -4.05 -0.02 1.67 16 12 C -0.13 -1.66 3.75 -89.81 -0.34 -1.99 16 13 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 14 C -0.14 -2.21 7.39 -25.92 -0.19 -2.40 16 15 C 0.17 3.15 4.48 -67.03 -0.30 2.85 16 16 H 0.08 1.42 8.10 -51.93 -0.42 1.00 16 17 N -0.71 -17.67 5.40 -52.55 -0.28 -17.95 16 18 C -0.25 -6.76 9.97 -15.06 -0.15 -6.91 16 19 H 0.07 1.89 7.83 -52.48 -0.41 1.48 16 20 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 21 N -0.93 -28.12 13.06 55.49 0.72 -27.39 16 22 Si 0.91 22.27 29.55 -169.99 -5.02 17.25 16 23 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 24 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 25 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 26 C -0.16 -2.61 7.45 -25.82 -0.19 -2.80 16 27 C -0.07 -0.63 9.44 -39.59 -0.37 -1.00 16 28 C -0.10 -0.89 9.95 -39.54 -0.39 -1.29 16 29 C 0.15 1.55 6.61 -84.78 -0.56 0.99 16 30 N -0.48 -4.90 10.23 -7.17 -0.07 -4.97 16 31 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.08 0.19 8.07 -51.93 -0.42 -0.22 16 34 H 0.14 0.46 8.06 -52.49 -0.42 0.03 16 35 H 0.14 0.66 8.06 -52.48 -0.42 0.24 16 36 H 0.15 1.39 7.62 -52.49 -0.40 0.99 16 37 H 0.40 3.45 6.46 -40.82 -0.26 3.19 16 38 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 39 H 0.07 1.06 7.88 -51.93 -0.41 0.65 16 40 H 0.06 0.90 8.14 -51.92 -0.42 0.48 16 41 H 0.08 1.34 8.08 -51.93 -0.42 0.92 16 42 H 0.39 10.19 7.92 -40.82 -0.32 9.87 16 43 H 0.26 7.47 8.31 -40.82 -0.34 7.14 16 44 H 0.08 1.42 7.92 -51.93 -0.41 1.00 16 45 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 46 H 0.13 0.82 6.35 -52.48 -0.33 0.49 16 47 H 0.14 1.05 8.06 -52.49 -0.42 0.63 16 LS Contribution 394.13 15.07 5.94 5.94 Total: -1.00 -34.26 394.13 -10.99 -45.25 By element: Atomic # 1 Polarization: 16.07 SS G_CDS: -6.75 Total: 9.32 kcal Atomic # 6 Polarization: -5.03 SS G_CDS: -5.27 Total: -10.30 kcal Atomic # 7 Polarization: -58.75 SS G_CDS: 0.03 Total: -58.72 kcal Atomic # 8 Polarization: -8.81 SS G_CDS: 0.09 Total: -8.73 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.25 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -34.26 -10.99 -45.25 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086229101.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.856 kcal (2) G-P(sol) polarization free energy of solvation -34.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.245 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds