Wall clock time and date at job start Tue Mar 31 2020 22:16:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.39315 * 119.11339 * 2 1 4 4 C 1.36585 * 119.90398 * 180.02562 * 3 2 1 5 5 C 1.40891 * 118.15759 * 359.97438 * 4 3 2 6 6 C 1.40176 * 121.21461 * 180.02562 * 5 4 3 7 7 C 1.38553 * 119.40109 * 180.02562 * 6 5 4 8 8 C 1.47767 * 119.80622 * 179.97438 * 7 6 5 9 9 O 1.21561 * 120.00048 * 359.96106 * 8 7 6 10 10 N 1.34781 * 119.99884 * 179.97438 * 8 7 6 11 11 C 1.46494 * 120.00047 * 180.02562 * 10 8 7 12 12 C 1.52993 * 109.47302 * 180.02562 * 11 10 8 13 13 H 1.08995 * 112.85183 * 45.32486 * 12 11 10 14 14 C 1.53779 * 113.61595 * 176.53029 * 12 11 10 15 15 C 1.53774 * 87.08407 * 139.97836 * 14 12 11 16 16 H 1.08999 * 113.61657 * 89.20001 * 15 14 12 17 17 N 1.46507 * 113.61284 * 220.01696 * 15 14 12 18 18 C 1.36939 * 119.99754 * 204.99639 * 17 15 14 19 19 H 1.08005 * 120.00060 * 0.02562 * 18 17 15 20 20 C 1.38814 * 119.99730 * 180.02562 * 18 17 15 21 21 N 1.31617 * 120.00170 * 0.02562 * 20 18 17 22 22 Si 1.86807 * 119.99863 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47124 * 89.99936 * 22 20 18 24 24 H 1.48495 * 109.47106 * 210.00245 * 22 20 18 25 25 H 1.48504 * 109.46776 * 329.99988 * 22 20 18 26 26 C 1.53792 * 113.61236 * 274.13308 * 12 11 10 27 27 C 1.40632 * 120.38562 * 359.94140 * 7 6 5 28 28 C 1.35704 * 120.92439 * 0.05652 * 27 7 6 29 29 C 1.40746 * 120.11288 * 359.96457 * 28 27 7 30 30 N 1.31115 * 119.11840 * 179.97438 * 2 1 3 31 31 H 1.08997 * 109.47394 * 90.00195 * 1 2 3 32 32 H 1.09001 * 109.46913 * 209.99914 * 1 2 3 33 33 H 1.09006 * 109.47144 * 330.00149 * 1 2 3 34 34 H 1.08000 * 120.04971 * 0.27126 * 3 2 1 35 35 H 1.08003 * 120.92004 * 180.02562 * 4 3 2 36 36 H 1.08002 * 120.30270 * 359.95514 * 6 5 4 37 37 H 0.96995 * 119.99863 * 359.97438 * 10 8 7 38 38 H 1.09003 * 109.47206 * 299.99780 * 11 10 8 39 39 H 1.09003 * 109.47466 * 59.99017 * 11 10 8 40 40 H 1.09007 * 113.61406 * 254.52677 * 14 12 11 41 41 H 1.09004 * 113.61796 * 25.42458 * 14 12 11 42 42 H 0.96994 * 120.00095 * 25.00085 * 17 15 14 43 43 H 0.96999 * 120.00192 * 179.97438 * 21 20 18 44 44 H 1.08996 * 113.61302 * 334.56526 * 26 12 11 45 45 H 1.09001 * 113.61155 * 105.46854 * 26 12 11 46 46 H 1.08005 * 119.53399 * 180.02562 * 27 7 6 47 47 H 1.08000 * 119.93839 * 179.97438 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1848 1.2171 0.0000 4 6 3.5505 1.2360 -0.0005 5 6 4.2325 0.0031 -0.0005 6 6 5.6331 -0.0523 -0.0005 7 6 6.2650 -1.2854 -0.0010 8 6 7.7411 -1.3542 -0.0016 9 8 8.3973 -0.3310 -0.0023 10 7 8.3599 -2.5516 -0.0016 11 6 9.8232 -2.6199 -0.0016 12 6 10.2654 -4.0846 -0.0022 13 1 9.7117 -4.6936 -0.7167 14 6 11.7898 -4.2678 -0.0875 15 6 11.6307 -5.4092 0.9306 16 1 11.4517 -6.3816 0.4720 17 7 12.6889 -5.4439 1.9434 18 6 12.9946 -6.6204 2.5740 19 1 12.4560 -7.5227 2.3245 20 6 13.9968 -6.6532 3.5339 21 7 14.6528 -5.5535 3.8383 22 14 14.4144 -8.2582 4.3937 23 1 15.4680 -8.9708 3.6272 24 1 14.9079 -7.9715 5.7646 25 1 13.1992 -9.1081 4.4726 26 6 10.3462 -4.7043 1.4030 27 6 5.5099 -2.4717 -0.0003 28 6 4.1533 -2.4349 -0.0003 29 6 3.4805 -1.1986 -0.0002 30 7 2.1450 -1.1454 0.0005 31 1 -0.3634 0.0000 -1.0276 32 1 -0.3633 -0.8900 0.5138 33 1 -0.3634 0.8900 0.5138 34 1 1.6312 2.1445 0.0044 35 1 4.0927 2.1701 -0.0001 36 1 6.2145 0.8579 -0.0012 37 1 7.8362 -3.3681 -0.0008 38 1 10.2101 -2.1237 -0.8916 39 1 10.2102 -2.1235 0.8883 40 1 12.1355 -4.6008 -1.0662 41 1 12.3540 -3.4171 0.2948 42 1 13.1728 -4.6337 2.1672 43 1 15.3529 -5.5764 4.5093 44 1 10.5149 -3.9731 2.1936 45 1 9.5279 -5.3890 1.6259 46 1 6.0167 -3.4255 -0.0003 47 1 3.5891 -3.3558 -0.0001 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086229101.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:16:36 Heat of formation + Delta-G solvation = 20.776777 kcal Electronic energy + Delta-G solvation = -27057.661293 eV Core-core repulsion = 23204.794471 eV Total energy + Delta-G solvation = -3852.866823 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.01830 -40.91564 -39.82346 -37.99061 -36.13348 -35.10282 -34.53880 -33.13672 -32.14594 -31.15151 -29.66254 -28.15183 -26.44800 -25.87583 -24.96280 -24.27819 -23.11111 -22.41978 -21.93476 -20.56325 -19.36770 -19.01155 -18.87364 -17.65466 -17.12511 -16.76734 -16.57468 -16.51043 -16.04145 -15.69166 -15.55881 -15.47369 -15.10369 -14.84940 -14.78337 -14.49725 -14.43885 -13.94128 -13.85281 -13.42555 -13.22501 -13.13307 -13.02658 -13.01995 -12.92194 -12.66801 -12.46942 -12.27964 -12.18379 -12.07213 -11.63949 -11.62370 -11.54835 -11.17626 -10.97649 -10.79832 -10.54765 -10.18513 -9.74715 -9.34153 -8.96772 -7.94020 -5.22237 -0.84942 -0.37995 0.82548 1.34991 1.47670 1.49308 1.57613 2.06126 2.23082 2.57234 3.01753 3.13468 3.37848 3.51956 3.56574 3.63426 3.74535 3.75477 3.84062 3.92940 3.95614 4.01568 4.22934 4.26844 4.36334 4.37775 4.43469 4.56418 4.65625 4.74491 4.80050 4.81623 4.85582 4.93046 4.98043 4.99202 5.00260 5.05809 5.16212 5.18535 5.22528 5.23642 5.32955 5.42025 5.50727 5.53561 5.72937 5.74257 6.28315 6.46828 6.87309 7.11782 7.33836 8.12637 8.34049 9.29489 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.022839 B = 0.001656 C = 0.001604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1225.682270 B =16902.387710 C =17455.871821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.160 3.840 3 C -0.174 4.174 4 C -0.049 4.049 5 C -0.137 4.137 6 C -0.026 4.026 7 C -0.150 4.150 8 C 0.555 3.445 9 O -0.582 6.582 10 N -0.706 5.706 11 C 0.137 3.863 12 C -0.095 4.095 13 H 0.124 0.876 14 C -0.136 4.136 15 C 0.142 3.858 16 H 0.082 0.918 17 N -0.730 5.730 18 C -0.243 4.243 19 H 0.080 0.920 20 C -0.079 4.079 21 N -0.972 5.972 22 Si 0.973 3.027 23 H -0.287 1.287 24 H -0.298 1.298 25 H -0.268 1.268 26 C -0.154 4.154 27 C -0.067 4.067 28 C -0.106 4.106 29 C 0.131 3.869 30 N -0.511 5.511 31 H 0.094 0.906 32 H 0.074 0.926 33 H 0.103 0.897 34 H 0.175 0.825 35 H 0.167 0.833 36 H 0.144 0.856 37 H 0.415 0.585 38 H 0.069 0.931 39 H 0.049 0.951 40 H 0.079 0.921 41 H 0.066 0.934 42 H 0.371 0.629 43 H 0.250 0.750 44 H 0.054 0.946 45 H 0.069 0.931 46 H 0.160 0.840 47 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.217 12.703 -12.630 35.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.008 3.992 3 C -0.193 4.193 4 C -0.074 4.074 5 C -0.139 4.139 6 C -0.046 4.046 7 C -0.153 4.153 8 C 0.343 3.657 9 O -0.463 6.463 10 N -0.357 5.357 11 C 0.014 3.986 12 C -0.114 4.114 13 H 0.142 0.858 14 C -0.176 4.176 15 C 0.033 3.967 16 H 0.100 0.900 17 N -0.367 5.367 18 C -0.375 4.375 19 H 0.098 0.902 20 C -0.271 4.271 21 N -0.623 5.623 22 Si 0.802 3.198 23 H -0.214 1.214 24 H -0.225 1.225 25 H -0.193 1.193 26 C -0.195 4.195 27 C -0.087 4.087 28 C -0.125 4.125 29 C 0.009 3.991 30 N -0.222 5.222 31 H 0.113 0.887 32 H 0.093 0.907 33 H 0.122 0.878 34 H 0.193 0.807 35 H 0.185 0.815 36 H 0.162 0.838 37 H 0.253 0.747 38 H 0.088 0.912 39 H 0.067 0.933 40 H 0.098 0.902 41 H 0.085 0.915 42 H 0.203 0.797 43 H 0.058 0.942 44 H 0.073 0.927 45 H 0.088 0.912 46 H 0.178 0.822 47 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -31.099 12.325 -12.574 35.738 hybrid contribution 1.352 0.025 0.929 1.641 sum -29.747 12.350 -11.645 34.249 Atomic orbital electron populations 1.20934 0.86208 1.04838 1.04455 1.22267 0.98919 0.88212 0.89813 1.22141 0.94799 1.00318 1.02026 1.21946 0.95248 0.97436 0.92768 1.18972 0.94079 0.95397 1.05446 1.21536 0.92743 0.98087 0.92207 1.19890 0.92050 0.95243 1.08160 1.18504 0.87877 0.83515 0.75780 1.90760 1.67781 1.35635 1.52139 1.45807 1.07841 1.08315 1.73773 1.21292 0.79056 0.96846 1.01455 1.22482 0.96570 0.94142 0.98254 0.85824 1.23322 0.95286 0.98943 1.00024 1.22005 0.88320 0.96800 0.89599 0.90019 1.42637 1.41042 1.08460 1.44610 1.19753 1.13596 0.89502 1.14618 0.90229 1.25592 0.99714 1.00294 1.01536 1.69825 1.27372 1.28277 1.36820 0.85143 0.78141 0.79340 0.77169 1.21406 1.22534 1.19250 1.23760 0.99970 0.99865 0.95884 1.21133 0.93685 0.97909 0.96022 1.20879 0.93948 0.96956 1.00702 1.19286 0.89654 0.93645 0.96489 1.67961 1.08266 1.30238 1.15696 0.88740 0.90745 0.87810 0.80728 0.81534 0.83846 0.74673 0.91244 0.93289 0.90200 0.91505 0.79686 0.94154 0.92704 0.91209 0.82246 0.82772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.70 10.14 71.24 0.72 0.02 16 2 C 0.16 2.19 6.78 42.92 0.29 2.48 16 3 C -0.17 -1.77 9.64 22.14 0.21 -1.56 16 4 C -0.05 -0.63 9.89 22.53 0.22 -0.41 16 5 C -0.14 -2.56 5.74 -21.29 -0.12 -2.68 16 6 C -0.03 -0.53 9.35 22.82 0.21 -0.31 16 7 C -0.15 -3.14 5.87 -20.10 -0.12 -3.26 16 8 C 0.55 14.10 7.77 86.76 0.67 14.77 16 9 O -0.58 -19.42 16.31 -3.91 -0.06 -19.48 16 10 N -0.71 -14.83 5.50 -466.06 -2.57 -17.40 16 11 C 0.14 3.37 5.50 86.38 0.47 3.85 16 12 C -0.10 -2.24 3.75 -10.27 -0.04 -2.28 16 13 H 0.12 2.17 8.14 -2.39 -0.02 2.15 16 14 C -0.14 -4.07 7.39 31.12 0.23 -3.84 16 15 C 0.14 5.28 4.48 45.57 0.20 5.49 16 16 H 0.08 2.92 8.10 -2.39 -0.02 2.90 16 17 N -0.73 -36.66 5.40 -320.16 -1.73 -38.39 16 18 C -0.24 -13.41 9.97 84.03 0.84 -12.58 16 19 H 0.08 4.16 7.83 -2.91 -0.02 4.14 16 20 C -0.08 -4.58 5.50 84.86 0.47 -4.12 16 21 N -0.97 -60.25 13.06 21.65 0.28 -59.97 16 22 Si 0.97 46.19 29.55 68.60 2.03 48.22 16 23 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16 24 H -0.30 -14.39 7.11 99.48 0.71 -13.68 16 25 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 26 C -0.15 -4.78 7.45 31.18 0.23 -4.55 16 27 C -0.07 -1.08 9.44 22.27 0.21 -0.87 16 28 C -0.11 -1.83 9.95 22.30 0.22 -1.61 16 29 C 0.13 2.64 6.61 40.35 0.27 2.90 16 30 N -0.51 -10.00 10.23 -176.59 -1.81 -11.80 16 31 H 0.09 0.43 8.14 -2.39 -0.02 0.41 16 32 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 33 H 0.10 0.16 8.07 -2.38 -0.02 0.14 16 34 H 0.18 0.46 8.06 -2.91 -0.02 0.44 16 35 H 0.17 1.23 8.06 -2.91 -0.02 1.20 16 36 H 0.14 2.84 7.62 -2.91 -0.02 2.82 16 37 H 0.42 6.06 6.46 -92.71 -0.60 5.46 16 38 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 39 H 0.05 1.46 7.88 -2.39 -0.02 1.44 16 40 H 0.08 2.12 8.14 -2.38 -0.02 2.10 16 41 H 0.07 2.21 8.08 -2.38 -0.02 2.19 16 42 H 0.37 20.33 7.92 -92.71 -0.73 19.60 16 43 H 0.25 15.05 8.31 -92.71 -0.77 14.28 16 44 H 0.05 1.98 7.92 -2.39 -0.02 1.97 16 45 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 46 H 0.16 1.56 6.35 -2.91 -0.02 1.54 16 47 H 0.15 2.12 8.06 -2.91 -0.02 2.10 16 Total: -1.00 -76.86 394.13 1.02 -75.84 By element: Atomic # 1 Polarization: 31.86 SS G_CDS: -0.33 Total: 31.53 kcal Atomic # 6 Polarization: -13.75 SS G_CDS: 5.20 Total: -8.55 kcal Atomic # 7 Polarization: -121.74 SS G_CDS: -5.82 Total: -127.56 kcal Atomic # 8 Polarization: -19.42 SS G_CDS: -0.06 Total: -19.48 kcal Atomic # 14 Polarization: 46.19 SS G_CDS: 2.03 Total: 48.22 kcal Total: -76.86 1.02 -75.84 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086229101.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.617 kcal (2) G-P(sol) polarization free energy of solvation -76.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.840 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds