Wall clock time and date at job start Tue Mar 31 2020 22:16:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.39318 * 119.06330 * 2 1 4 4 C 1.38849 * 119.58293 * 180.02562 * 3 2 1 5 5 C 1.47908 * 121.11410 * 179.97438 * 4 3 2 6 6 O 1.21535 * 120.00097 * 174.12206 * 5 4 3 7 7 N 1.34776 * 119.99757 * 353.84892 * 5 4 3 8 8 C 1.46495 * 120.00028 * 180.27980 * 7 5 4 9 9 C 1.53006 * 109.47171 * 179.97438 * 8 7 5 10 10 H 1.09001 * 112.84494 * 314.66260 * 9 8 7 11 11 C 1.53780 * 113.61268 * 85.86301 * 9 8 7 12 12 C 1.53957 * 87.01787 * 139.95255 * 11 9 8 13 13 H 1.09003 * 113.53721 * 89.18457 * 12 11 9 14 14 N 1.46501 * 113.74095 * 220.05375 * 12 11 9 15 15 C 1.36938 * 119.99782 * 252.59535 * 14 12 11 16 16 H 1.08001 * 120.00352 * 0.02562 * 15 14 12 17 17 C 1.38809 * 119.99871 * 179.97438 * 15 14 12 18 18 N 1.31624 * 120.00351 * 0.02562 * 17 15 14 19 19 Si 1.86807 * 120.00116 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47119 * 89.99878 * 19 17 15 21 21 H 1.48502 * 109.47189 * 210.00004 * 19 17 15 22 22 H 1.48500 * 109.46794 * 330.00076 * 19 17 15 23 23 C 1.53778 * 113.61352 * 183.47018 * 9 8 7 24 24 C 1.41822 * 117.77805 * 0.24870 * 4 3 2 25 25 C 1.40096 * 121.37505 * 179.73291 * 24 4 3 26 26 C 1.36254 * 119.64797 * 180.02562 * 25 24 4 27 27 C 1.39344 * 120.83165 * 359.97438 * 26 25 24 28 28 C 1.36076 * 121.04869 * 359.43552 * 27 26 25 29 29 C 1.40709 * 119.73924 * 0.84104 * 28 27 26 30 30 N 1.30968 * 119.06214 * 179.97438 * 2 1 3 31 31 H 1.08999 * 109.47297 * 89.99965 * 1 2 3 32 32 H 1.08997 * 109.47074 * 209.99837 * 1 2 3 33 33 H 1.09000 * 109.46996 * 329.99979 * 1 2 3 34 34 H 1.08003 * 120.20296 * 359.97438 * 3 2 1 35 35 H 0.97002 * 119.99789 * 0.27325 * 7 5 4 36 36 H 1.09001 * 109.47210 * 299.99180 * 8 7 5 37 37 H 1.09004 * 109.47449 * 59.99548 * 8 7 5 38 38 H 1.09001 * 113.60957 * 254.52734 * 11 9 8 39 39 H 1.08993 * 113.61886 * 25.43349 * 11 9 8 40 40 H 0.96994 * 119.99853 * 72.59689 * 14 12 11 41 41 H 0.96996 * 120.00405 * 180.02562 * 18 17 15 42 42 H 1.09004 * 113.61569 * 334.56203 * 23 9 8 43 43 H 1.08998 * 113.61770 * 105.46991 * 23 9 8 44 44 H 1.08002 * 120.17816 * 0.03910 * 25 24 4 45 45 H 1.08002 * 119.58487 * 179.97438 * 26 25 24 46 46 H 1.08000 * 119.47363 * 179.97438 * 27 26 25 47 47 H 1.08003 * 120.12396 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1837 1.2178 0.0000 4 6 3.5722 1.2303 -0.0005 5 6 4.3250 2.5035 -0.0011 6 8 5.5355 2.4938 0.1062 7 7 3.6689 3.6742 -0.1262 8 6 4.4150 4.9349 -0.1330 9 6 3.4398 6.1038 -0.2867 10 1 2.6924 5.9324 -1.0614 11 6 2.8458 6.5898 1.0459 12 6 3.0059 8.0214 0.5028 13 1 2.1387 8.3748 -0.0552 14 7 3.4683 8.9843 1.5053 15 6 2.6021 9.9178 2.0088 16 1 1.5779 9.9439 1.6672 17 6 3.0401 10.8298 2.9592 18 7 4.2882 10.7978 3.3760 19 14 1.8583 12.1028 3.6466 20 1 1.1818 11.5521 4.8483 21 1 2.6116 13.3270 4.0198 22 1 0.8422 12.4412 2.6179 23 6 4.1314 7.4734 -0.3903 24 6 4.2445 -0.0184 -0.0065 25 6 5.6434 -0.0936 -0.0130 26 6 6.2529 -1.3122 -0.0192 27 6 5.5022 -2.4861 -0.0186 28 6 4.1420 -2.4494 -0.0003 29 6 3.4772 -1.2093 0.0004 30 7 2.1432 -1.1448 0.0005 31 1 -0.3634 0.0000 -1.0276 32 1 -0.3633 -0.8900 0.5138 33 1 -0.3633 0.8900 0.5138 34 1 1.6318 2.1461 -0.0004 35 1 2.7027 3.6819 -0.2119 36 1 4.9619 5.0385 0.8042 37 1 5.1180 4.9366 -0.9660 38 1 1.8079 6.2921 1.1956 39 1 3.4768 6.3770 1.9087 40 1 4.3881 8.9607 1.8125 41 1 4.5942 11.4348 4.0404 42 1 5.1147 7.5027 0.0792 43 1 4.1301 7.8881 -1.3983 44 1 6.2357 0.8096 -0.0130 45 1 7.3314 -1.3690 -0.0246 46 1 6.0080 -3.4403 -0.0239 47 1 3.5750 -3.3686 0.0004 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086267197.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:16:10 Heat of formation + Delta-G solvation = 50.119740 kcal Electronic energy + Delta-G solvation = -27694.809127 eV Core-core repulsion = 23843.214710 eV Total energy + Delta-G solvation = -3851.594416 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.46530 -39.71219 -38.49282 -37.69762 -34.94472 -33.83222 -33.30728 -32.35764 -30.67482 -30.09686 -28.20952 -27.48809 -25.16995 -24.86307 -23.96170 -23.10854 -22.73612 -21.17365 -20.73865 -19.15329 -18.34189 -17.74247 -17.67953 -17.06816 -16.10138 -15.74716 -15.64271 -15.17009 -15.07956 -14.92080 -14.67095 -14.55127 -13.94600 -13.67211 -13.50633 -13.44919 -13.39016 -13.26750 -12.96225 -12.64564 -12.00925 -11.91367 -11.87675 -11.69535 -11.68466 -11.47481 -11.28689 -10.87289 -10.79834 -10.65059 -10.50885 -10.24074 -10.13769 -9.89362 -9.63613 -9.47674 -9.24109 -9.03617 -8.90726 -8.53415 -7.00359 -5.81651 -3.10843 -0.23105 0.44279 1.42043 2.43330 2.80427 2.85825 3.40266 3.45382 3.47268 3.76176 3.79187 4.09023 4.24662 4.38512 4.50867 4.54938 4.74719 4.82110 4.88398 4.92170 4.98003 5.04351 5.13050 5.14607 5.20925 5.35469 5.40062 5.41921 5.43167 5.56896 5.71287 5.73904 5.76174 5.80219 5.86413 6.02049 6.03954 6.09621 6.19711 6.22783 6.27668 6.30419 6.36487 6.52562 6.56943 6.75783 7.05162 7.20737 7.53138 7.65588 7.90373 8.36764 9.47869 10.05747 10.39759 11.40600 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.018485 B = 0.001955 C = 0.001851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1514.354697 B =14318.548915 C =15123.026675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C 0.154 3.846 3 C -0.136 4.136 4 C -0.065 4.065 5 C 0.557 3.443 6 O -0.526 6.526 7 N -0.712 5.712 8 C 0.131 3.869 9 C -0.128 4.128 10 H 0.089 0.911 11 C -0.162 4.162 12 C 0.166 3.834 13 H 0.075 0.925 14 N -0.712 5.712 15 C -0.245 4.245 16 H 0.071 0.929 17 C -0.013 4.013 18 N -0.932 5.932 19 Si 0.908 3.092 20 H -0.290 1.290 21 H -0.291 1.291 22 H -0.282 1.282 23 C -0.142 4.142 24 C -0.072 4.072 25 C -0.098 4.098 26 C -0.122 4.122 27 C -0.096 4.096 28 C -0.102 4.102 29 C 0.130 3.870 30 N -0.461 5.461 31 H 0.083 0.917 32 H 0.081 0.919 33 H 0.080 0.920 34 H 0.143 0.857 35 H 0.401 0.599 36 H 0.074 0.926 37 H 0.069 0.931 38 H 0.054 0.946 39 H 0.078 0.922 40 H 0.385 0.615 41 H 0.256 0.744 42 H 0.081 0.919 43 H 0.062 0.938 44 H 0.169 0.831 45 H 0.129 0.871 46 H 0.130 0.870 47 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.984 -26.488 -10.469 28.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.001 3.999 3 C -0.156 4.156 4 C -0.076 4.076 5 C 0.344 3.656 6 O -0.404 6.404 7 N -0.362 5.362 8 C 0.008 3.992 9 C -0.148 4.148 10 H 0.107 0.893 11 C -0.203 4.203 12 C 0.054 3.946 13 H 0.093 0.907 14 N -0.350 5.350 15 C -0.376 4.376 16 H 0.089 0.911 17 C -0.209 4.209 18 N -0.579 5.579 19 Si 0.738 3.262 20 H -0.217 1.217 21 H -0.217 1.217 22 H -0.207 1.207 23 C -0.181 4.181 24 C -0.074 4.074 25 C -0.116 4.116 26 C -0.140 4.140 27 C -0.116 4.116 28 C -0.120 4.120 29 C 0.008 3.992 30 N -0.171 5.171 31 H 0.101 0.899 32 H 0.100 0.900 33 H 0.099 0.901 34 H 0.161 0.839 35 H 0.236 0.764 36 H 0.093 0.907 37 H 0.087 0.913 38 H 0.073 0.927 39 H 0.097 0.903 40 H 0.219 0.781 41 H 0.066 0.934 42 H 0.100 0.900 43 H 0.081 0.919 44 H 0.186 0.814 45 H 0.147 0.853 46 H 0.148 0.852 47 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -2.623 -27.110 -10.326 29.128 hybrid contribution -0.343 1.391 0.549 1.534 sum -2.966 -25.719 -9.777 27.674 Atomic orbital electron populations 1.20816 0.87965 1.04112 1.03592 1.21421 0.97370 0.87579 0.93532 1.22274 0.93498 0.99936 0.99938 1.20390 0.93682 0.93467 1.00079 1.18036 0.87132 0.83322 0.77123 1.90604 1.13576 1.86544 1.49704 1.45978 1.11162 1.05984 1.73121 1.21553 0.94356 0.80724 1.02568 1.22659 0.98409 0.93564 1.00145 0.89291 1.23996 0.99832 1.01071 0.95445 1.21538 0.94948 0.87903 0.90197 0.90654 1.42408 1.11925 1.35078 1.45592 1.19294 0.93014 1.07717 1.17610 0.91085 1.24782 0.96386 0.99818 0.99943 1.69659 1.14816 1.39139 1.34328 0.86187 0.79885 0.81111 0.78971 1.21688 1.21744 1.20725 1.23445 1.00255 0.93704 1.00730 1.18664 0.95198 0.92007 1.01576 1.22072 0.93389 1.00539 0.95567 1.21113 1.00623 0.92242 0.99984 1.21007 0.93735 0.98928 0.97882 1.20765 0.94236 0.96022 1.01022 1.18841 0.88735 0.92984 0.98593 1.67632 1.08844 1.28854 1.11803 0.89868 0.90038 0.90092 0.83908 0.76362 0.90733 0.91293 0.92717 0.90305 0.78054 0.93416 0.90040 0.91902 0.81401 0.85311 0.85228 0.84637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.63 10.14 36.00 0.37 -0.26 16 2 C 0.15 1.42 6.78 -82.56 -0.56 0.86 16 3 C -0.14 -1.21 9.20 -38.95 -0.36 -1.57 16 4 C -0.07 -0.74 5.94 -104.34 -0.62 -1.36 16 5 C 0.56 6.96 7.75 -12.30 -0.10 6.86 16 6 O -0.53 -8.00 13.53 5.33 0.07 -7.92 16 7 N -0.71 -7.53 5.51 -61.23 -0.34 -7.86 16 8 C 0.13 1.57 5.50 -4.04 -0.02 1.55 16 9 C -0.13 -1.58 3.75 -89.81 -0.34 -1.91 16 10 H 0.09 0.93 8.14 -51.93 -0.42 0.50 16 11 C -0.16 -2.52 7.45 -25.83 -0.19 -2.71 16 12 C 0.17 3.08 4.48 -67.03 -0.30 2.78 16 13 H 0.08 1.38 8.10 -51.93 -0.42 0.96 16 14 N -0.71 -17.35 5.41 -52.55 -0.28 -17.64 16 15 C -0.25 -6.66 9.97 -15.06 -0.15 -6.81 16 16 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 17 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 18 N -0.93 -27.86 13.06 55.49 0.72 -27.14 16 19 Si 0.91 22.06 29.55 -169.99 -5.02 17.03 16 20 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 21 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 22 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 23 C -0.14 -2.13 7.40 -25.92 -0.19 -2.32 16 24 C -0.07 -0.87 5.76 -106.52 -0.61 -1.49 16 25 C -0.10 -1.14 9.25 -39.60 -0.37 -1.50 16 26 C -0.12 -1.12 9.96 -39.88 -0.40 -1.51 16 27 C -0.10 -0.78 9.94 -39.95 -0.40 -1.17 16 28 C -0.10 -0.97 9.99 -39.43 -0.39 -1.36 16 29 C 0.13 1.52 6.61 -84.87 -0.56 0.96 16 30 N -0.46 -5.20 10.19 -7.25 -0.07 -5.27 16 31 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.08 0.34 8.07 -51.93 -0.42 -0.08 16 34 H 0.14 0.83 6.55 -52.48 -0.34 0.48 16 35 H 0.40 3.20 6.65 -40.82 -0.27 2.93 16 36 H 0.07 1.03 7.88 -51.93 -0.41 0.62 16 37 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 38 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.08 1.37 7.92 -51.93 -0.41 0.96 16 40 H 0.39 10.04 7.92 -40.82 -0.32 9.71 16 41 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 42 H 0.08 1.29 8.08 -51.93 -0.42 0.88 16 43 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 44 H 0.17 2.16 4.99 -52.49 -0.26 1.90 16 45 H 0.13 0.89 8.06 -52.49 -0.42 0.46 16 46 H 0.13 0.67 8.06 -52.49 -0.42 0.24 16 47 H 0.14 1.05 8.06 -52.48 -0.42 0.62 16 LS Contribution 389.24 15.07 5.87 5.87 Total: -1.00 -33.02 389.24 -10.97 -44.00 By element: Atomic # 1 Polarization: 17.02 SS G_CDS: -6.63 Total: 10.38 kcal Atomic # 6 Polarization: -6.16 SS G_CDS: -5.29 Total: -11.44 kcal Atomic # 7 Polarization: -57.94 SS G_CDS: 0.03 Total: -57.91 kcal Atomic # 8 Polarization: -8.00 SS G_CDS: 0.07 Total: -7.92 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -33.02 -10.97 -44.00 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086267197.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.116 kcal (2) G-P(sol) polarization free energy of solvation -33.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.996 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds