Wall clock time and date at job start Tue Mar 31 2020 22:16:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.30822 * 119.22937 * 2 1 4 4 C 1.33790 * 121.71977 * 180.28968 * 3 2 1 5 5 C 1.40532 * 120.82982 * 179.71937 * 4 3 2 6 6 C 1.36123 * 119.82130 * 180.02562 * 5 4 3 7 7 C 1.39348 * 121.09264 * 0.02562 * 6 5 4 8 8 C 1.36136 * 120.83662 * 0.02562 * 7 6 5 9 9 C 1.40557 * 119.62061 * 359.95826 * 8 7 6 10 10 C 1.40486 * 121.22885 * 180.02562 * 9 8 7 11 11 C 1.39050 * 117.96124 * 180.02562 * 10 9 8 12 12 C 1.47762 * 120.26526 * 180.02562 * 11 10 9 13 13 O 1.21563 * 120.00038 * 173.70002 * 12 11 10 14 14 N 1.34777 * 119.99641 * 353.69422 * 12 11 10 15 15 C 1.46506 * 119.99741 * 180.02562 * 14 12 11 16 16 C 1.52991 * 109.47331 * 180.02562 * 15 14 12 17 17 H 1.09006 * 112.91161 * 316.24907 * 16 15 14 18 18 C 1.53960 * 113.66871 * 87.54682 * 16 15 14 19 19 C 1.53786 * 87.11201 * 139.88990 * 18 16 15 20 20 H 1.08996 * 113.61746 * 220.08764 * 19 18 16 21 21 N 1.46500 * 113.68823 * 89.19895 * 19 18 16 22 22 C 1.36940 * 119.99951 * 107.46466 * 21 19 18 23 23 H 1.07993 * 119.99681 * 0.02562 * 22 21 19 24 24 C 1.38811 * 119.99732 * 179.97438 * 22 21 19 25 25 N 1.31619 * 120.00527 * 0.02562 * 24 22 21 26 26 Si 1.86802 * 119.99834 * 180.02562 * 24 22 21 27 27 H 1.48504 * 109.47245 * 89.99963 * 26 24 22 28 28 H 1.48500 * 109.47565 * 210.00252 * 26 24 22 29 29 H 1.48504 * 109.46848 * 330.00104 * 26 24 22 30 30 C 1.53780 * 87.08018 * 334.64273 * 19 18 16 31 31 H 1.09005 * 109.46414 * 263.56733 * 1 2 3 32 32 H 1.08993 * 109.47264 * 23.56712 * 1 2 3 33 33 H 1.09000 * 109.47095 * 143.57012 * 1 2 3 34 34 H 1.08000 * 120.08954 * 0.05249 * 5 4 3 35 35 H 1.08000 * 119.45443 * 180.02562 * 6 5 4 36 36 H 1.08004 * 119.58478 * 179.97438 * 7 6 5 37 37 H 1.08001 * 120.19184 * 180.02562 * 8 7 6 38 38 H 1.07998 * 121.01843 * 0.03651 * 10 9 8 39 39 H 0.96991 * 120.00741 * 0.02562 * 14 12 11 40 40 H 1.09003 * 109.47423 * 59.99647 * 15 14 12 41 41 H 1.09001 * 109.46896 * 300.00543 * 15 14 12 42 42 H 1.08996 * 113.53294 * 25.34482 * 18 16 15 43 43 H 1.08993 * 113.66717 * 254.45809 * 18 16 15 44 44 H 0.97009 * 120.00339 * 287.46736 * 21 19 18 45 45 H 0.96999 * 120.00558 * 180.02562 * 25 24 22 46 46 H 1.09005 * 113.61398 * 139.97967 * 30 19 18 47 47 H 1.09000 * 113.61309 * 270.79850 * 30 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1459 1.1416 0.0000 4 6 3.4825 1.1998 -0.0058 5 6 4.1495 2.4367 -0.0116 6 6 5.5103 2.4719 -0.0179 7 6 6.2606 1.2976 -0.0193 8 6 5.6513 0.0802 -0.0148 9 6 4.2477 0.0059 -0.0079 10 6 3.5839 -1.2322 -0.0026 11 6 2.1934 -1.2265 0.0036 12 6 1.4435 -2.4997 0.0098 13 8 0.2339 -2.4920 0.1307 14 7 2.1005 -3.6694 -0.1186 15 6 1.3569 -4.9317 -0.1129 16 6 2.3328 -6.0992 -0.2723 17 1 3.0892 -5.9188 -1.0361 18 6 2.9116 -6.6073 1.0608 19 6 2.7559 -8.0295 0.4969 20 1 2.4018 -8.7538 1.2304 21 7 3.9274 -8.4993 -0.2467 22 6 4.7454 -9.4540 0.2962 23 1 4.5265 -9.8608 1.2724 24 6 5.8551 -9.8995 -0.4086 25 7 6.1216 -9.4041 -1.5985 26 14 6.9705 -11.2024 0.3317 27 1 6.4880 -12.5500 -0.0637 28 1 8.3566 -11.0076 -0.1646 29 1 6.9538 -11.0852 1.8120 30 6 1.6414 -7.4668 -0.4010 31 1 -0.3632 -0.1151 1.0213 32 1 -0.3633 0.9419 -0.4109 33 1 -0.3633 -0.8268 -0.6103 34 1 3.5841 3.3568 -0.0106 35 1 6.0169 3.4257 -0.0219 36 1 7.3391 1.3540 -0.0247 37 1 6.2429 -0.8233 -0.0155 38 1 4.1366 -2.1600 -0.0032 39 1 3.0657 -3.6756 -0.2148 40 1 0.6448 -4.9377 -0.9382 41 1 0.8205 -5.0331 0.8305 42 1 2.2704 -6.4053 1.9188 43 1 3.9482 -6.3148 1.2275 44 1 4.1238 -8.1341 -1.1237 45 1 6.8969 -9.7156 -2.0912 46 1 1.6527 -7.8681 -1.4144 47 1 0.6528 -7.5010 0.0569 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086380088.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:16:12 Heat of formation + Delta-G solvation = 30.209551 kcal Electronic energy + Delta-G solvation = -27833.027600 eV Core-core repulsion = 23980.569813 eV Total energy + Delta-G solvation = -3852.457787 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.16357 -40.76963 -39.86082 -38.08760 -36.15311 -35.20943 -34.46942 -32.86918 -32.15294 -31.28634 -29.12221 -28.34772 -26.41707 -25.97154 -25.37650 -23.69068 -23.31990 -22.87578 -21.99536 -20.05757 -19.43282 -19.23053 -18.59640 -17.87976 -16.90004 -16.74275 -16.64240 -16.60553 -15.91481 -15.73826 -15.53234 -15.50965 -15.31776 -14.80339 -14.67954 -14.56009 -14.38520 -14.00984 -13.93960 -13.69851 -13.26994 -13.14746 -12.92156 -12.90010 -12.72694 -12.62044 -12.44009 -12.35886 -12.14920 -12.05749 -11.64709 -11.50628 -11.46310 -11.08566 -10.92661 -10.82057 -10.47586 -10.16312 -9.73148 -9.29211 -8.98823 -7.94912 -5.22796 -0.87117 -0.43526 0.80244 1.48667 1.48958 1.49533 1.57811 2.03429 2.16647 2.56203 3.00807 3.11512 3.37666 3.41957 3.46839 3.57691 3.72642 3.76889 3.80052 3.87334 4.06313 4.16140 4.20035 4.29946 4.34495 4.37913 4.41919 4.55264 4.63679 4.73949 4.74721 4.79155 4.82350 4.92020 4.95268 5.01414 5.02884 5.11445 5.18721 5.31130 5.33953 5.36650 5.43492 5.46814 5.50123 5.55942 5.67642 5.83957 6.29060 6.41256 6.79557 7.08675 7.34237 8.11639 8.33744 9.28288 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.012138 B = 0.002318 C = 0.001985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2306.329071 B =12078.234706 C =14101.655139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.194 3.806 3 N -0.502 5.502 4 C 0.125 3.875 5 C -0.124 4.124 6 C -0.075 4.075 7 C -0.121 4.121 8 C -0.091 4.091 9 C -0.135 4.135 10 C -0.002 4.002 11 C -0.206 4.206 12 C 0.563 3.437 13 O -0.556 6.556 14 N -0.711 5.711 15 C 0.141 3.859 16 C -0.103 4.103 17 H 0.083 0.917 18 C -0.153 4.153 19 C 0.143 3.857 20 H 0.059 0.941 21 N -0.719 5.719 22 C -0.241 4.241 23 H 0.076 0.924 24 C -0.074 4.074 25 N -0.968 5.968 26 Si 0.970 3.030 27 H -0.289 1.289 28 H -0.296 1.296 29 H -0.270 1.270 30 C -0.134 4.134 31 H 0.082 0.918 32 H 0.076 0.924 33 H 0.094 0.906 34 H 0.143 0.857 35 H 0.163 0.837 36 H 0.161 0.839 37 H 0.155 0.845 38 H 0.170 0.830 39 H 0.409 0.591 40 H 0.068 0.932 41 H 0.073 0.927 42 H 0.091 0.909 43 H 0.049 0.951 44 H 0.375 0.625 45 H 0.251 0.749 46 H 0.057 0.943 47 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.799 23.976 3.597 24.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.041 3.959 3 N -0.212 5.212 4 C 0.004 3.996 5 C -0.142 4.142 6 C -0.095 4.095 7 C -0.139 4.139 8 C -0.109 4.109 9 C -0.137 4.137 10 C -0.028 4.028 11 C -0.211 4.211 12 C 0.350 3.650 13 O -0.437 6.437 14 N -0.362 5.362 15 C 0.018 3.982 16 C -0.122 4.122 17 H 0.101 0.899 18 C -0.194 4.194 19 C 0.033 3.967 20 H 0.077 0.923 21 N -0.358 5.358 22 C -0.373 4.373 23 H 0.094 0.906 24 C -0.267 4.267 25 N -0.619 5.619 26 Si 0.800 3.200 27 H -0.216 1.216 28 H -0.223 1.223 29 H -0.195 1.195 30 C -0.173 4.173 31 H 0.101 0.899 32 H 0.095 0.905 33 H 0.112 0.888 34 H 0.160 0.840 35 H 0.181 0.819 36 H 0.178 0.822 37 H 0.173 0.827 38 H 0.187 0.813 39 H 0.245 0.755 40 H 0.087 0.913 41 H 0.091 0.909 42 H 0.110 0.890 43 H 0.068 0.932 44 H 0.207 0.793 45 H 0.060 0.940 46 H 0.076 0.924 47 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -4.967 24.648 3.813 25.431 hybrid contribution 1.616 -1.486 -0.240 2.208 sum -3.351 23.162 3.573 23.675 Atomic orbital electron populations 1.21006 0.87068 1.03804 1.04093 1.21749 0.98120 0.86637 0.89400 1.67892 1.09208 1.28286 1.15813 1.19458 0.89034 0.94519 0.96561 1.21029 0.95339 0.95868 1.01994 1.21421 0.92898 1.00524 0.94612 1.21395 1.02206 0.91643 0.98635 1.21426 0.91536 1.00533 0.97425 1.19020 0.96215 0.93254 1.05246 1.22339 0.92693 0.98913 0.88880 1.20736 0.94754 0.94638 1.10972 1.18053 0.86865 0.83675 0.76384 1.90717 1.14541 1.87360 1.51061 1.45908 1.11683 1.05463 1.73195 1.21374 0.93862 0.80720 1.02259 1.22532 0.97726 0.93222 0.98688 0.89913 1.23749 1.00273 0.98837 0.96510 1.21385 0.87567 0.93665 0.94109 0.92329 1.42296 1.27354 1.46319 1.19786 1.19657 1.03675 1.13276 1.00665 0.90634 1.25515 1.00814 1.02942 0.97385 1.69798 1.30193 1.47806 1.14106 0.85187 0.77853 0.78974 0.78030 1.21618 1.22262 1.19482 1.23344 0.98931 0.94627 1.00447 0.89936 0.90544 0.88772 0.83960 0.81900 0.82187 0.82715 0.81314 0.75467 0.91335 0.90893 0.89039 0.93191 0.79321 0.94029 0.92414 0.87593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.37 8.82 71.24 0.63 -1.74 16 2 C 0.19 4.92 6.82 43.27 0.30 5.22 16 3 N -0.50 -12.92 10.20 -175.85 -1.79 -14.71 16 4 C 0.13 2.82 6.61 40.29 0.27 3.09 16 5 C -0.12 -2.09 9.97 22.34 0.22 -1.86 16 6 C -0.07 -0.84 9.94 22.04 0.22 -0.62 16 7 C -0.12 -1.30 9.96 22.05 0.22 -1.08 16 8 C -0.09 -1.27 9.77 22.35 0.22 -1.05 16 9 C -0.14 -2.66 5.74 -21.28 -0.12 -2.78 16 10 C 0.00 -0.04 9.38 23.01 0.22 0.18 16 11 C -0.21 -4.83 5.89 -20.00 -0.12 -4.95 16 12 C 0.56 14.11 7.69 86.76 0.67 14.78 16 13 O -0.56 -16.60 13.31 -3.91 -0.05 -16.65 16 14 N -0.71 -15.49 5.51 -466.05 -2.57 -18.06 16 15 C 0.14 3.25 5.51 86.38 0.48 3.72 16 16 C -0.10 -2.71 3.65 -10.21 -0.04 -2.75 16 17 H 0.08 2.40 8.14 -2.38 -0.02 2.38 16 18 C -0.15 -4.56 7.44 31.18 0.23 -4.33 16 19 C 0.14 5.21 4.56 45.52 0.21 5.41 16 20 H 0.06 2.16 8.10 -2.39 -0.02 2.14 16 21 N -0.72 -34.43 5.31 -320.45 -1.70 -36.13 16 22 C -0.24 -12.92 9.97 84.03 0.84 -12.08 16 23 H 0.08 3.91 7.83 -2.91 -0.02 3.88 16 24 C -0.07 -4.14 5.50 84.86 0.47 -3.67 16 25 N -0.97 -57.44 13.06 21.65 0.28 -57.16 16 26 Si 0.97 44.90 29.55 68.60 2.03 46.93 16 27 H -0.29 -13.24 7.11 99.48 0.71 -12.54 16 28 H -0.30 -13.80 7.11 99.48 0.71 -13.10 16 29 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 30 C -0.13 -3.87 7.38 31.12 0.23 -3.64 16 31 H 0.08 1.86 8.14 -2.38 -0.02 1.85 16 32 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 33 H 0.09 2.36 5.82 -2.39 -0.01 2.35 16 34 H 0.14 2.09 8.06 -2.91 -0.02 2.07 16 35 H 0.16 0.73 8.06 -2.91 -0.02 0.71 16 36 H 0.16 0.77 8.06 -2.91 -0.02 0.74 16 37 H 0.16 1.47 8.06 -2.91 -0.02 1.45 16 38 H 0.17 2.24 6.53 -2.91 -0.02 2.22 16 39 H 0.41 7.43 6.58 -92.71 -0.61 6.82 16 40 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 41 H 0.07 1.69 7.84 -2.39 -0.02 1.67 16 42 H 0.09 2.33 7.90 -2.39 -0.02 2.31 16 43 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 44 H 0.37 19.19 7.90 -92.70 -0.73 18.46 16 45 H 0.25 14.48 8.31 -92.71 -0.77 13.71 16 46 H 0.06 1.82 8.14 -2.38 -0.02 1.80 16 47 H 0.11 2.49 8.10 -2.39 -0.02 2.47 16 Total: -1.00 -69.84 388.85 0.99 -68.86 By element: Atomic # 1 Polarization: 35.41 SS G_CDS: -0.34 Total: 35.07 kcal Atomic # 6 Polarization: -13.27 SS G_CDS: 5.13 Total: -8.15 kcal Atomic # 7 Polarization: -120.28 SS G_CDS: -5.78 Total: -126.06 kcal Atomic # 8 Polarization: -16.60 SS G_CDS: -0.05 Total: -16.65 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 2.03 Total: 46.93 kcal Total: -69.84 0.99 -68.86 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086380088.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.068 kcal (2) G-P(sol) polarization free energy of solvation -69.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.859 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds