Wall clock time and date at job start Tue Mar 31 2020 22:16:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.39232 * 119.15048 * 2 1 4 4 C 1.36635 * 119.89862 * 180.02562 * 3 2 1 5 5 C 1.40793 * 118.15794 * 0.02562 * 4 3 2 6 6 C 1.40478 * 121.25382 * 180.02562 * 5 4 3 7 7 C 1.36317 * 120.08608 * 180.02562 * 6 5 4 8 8 C 1.38915 * 121.05164 * 359.95131 * 7 6 5 9 9 C 1.38708 * 120.72964 * 0.06660 * 8 7 6 10 10 C 1.47436 * 120.32935 * 180.22842 * 9 8 7 11 11 O 1.21599 * 119.99841 * 179.72158 * 10 9 8 12 12 N 1.34776 * 120.00158 * 359.72940 * 10 9 8 13 13 C 1.46504 * 120.00133 * 179.97438 * 12 10 9 14 14 C 1.52995 * 109.47019 * 179.97438 * 13 12 10 15 15 H 1.09004 * 112.84760 * 45.33866 * 14 13 12 16 16 C 1.53786 * 113.61333 * 176.52830 * 14 13 12 17 17 C 1.53778 * 87.08113 * 139.98530 * 16 14 13 18 18 H 1.09003 * 113.61457 * 219.93639 * 17 16 14 19 19 N 1.46505 * 113.61431 * 89.11574 * 17 16 14 20 20 C 1.36937 * 119.99563 * 154.99881 * 19 17 16 21 21 H 1.07994 * 120.00602 * 0.02562 * 20 19 17 22 22 C 1.38818 * 119.99472 * 179.97438 * 20 19 17 23 23 N 1.31615 * 120.00017 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 119.99664 * 179.97438 * 22 20 19 25 25 H 1.48496 * 109.46970 * 60.00085 * 24 22 20 26 26 H 1.48502 * 109.46846 * 180.02562 * 24 22 20 27 27 H 1.48503 * 109.47101 * 300.00218 * 24 22 20 28 28 C 1.53779 * 113.61958 * 274.13647 * 14 13 12 29 29 C 1.41548 * 118.94633 * 0.02562 * 5 4 3 30 30 N 1.31227 * 119.15406 * 180.02562 * 2 1 3 31 31 H 1.09004 * 109.47272 * 269.97865 * 1 2 3 32 32 H 1.09001 * 109.47277 * 29.98034 * 1 2 3 33 33 H 1.08993 * 109.47183 * 149.97540 * 1 2 3 34 34 H 1.07994 * 120.05274 * 359.97438 * 3 2 1 35 35 H 1.08005 * 120.92179 * 179.97438 * 4 3 2 36 36 H 1.08001 * 119.95614 * 0.04266 * 6 5 4 37 37 H 1.07998 * 119.47166 * 179.97438 * 7 6 5 38 38 H 1.07995 * 119.63276 * 180.02562 * 8 7 6 39 39 H 0.97004 * 119.99570 * 359.97438 * 12 10 9 40 40 H 1.09000 * 109.46729 * 299.99827 * 13 12 10 41 41 H 1.09006 * 109.46448 * 59.99610 * 13 12 10 42 42 H 1.09000 * 113.61399 * 254.53292 * 16 14 13 43 43 H 1.09000 * 113.60995 * 25.43534 * 16 14 13 44 44 H 0.97000 * 119.99993 * 334.99994 * 19 17 16 45 45 H 0.96998 * 119.99887 * 180.02562 * 23 22 20 46 46 H 1.09005 * 113.61321 * 334.57096 * 28 14 13 47 47 H 1.09004 * 113.61225 * 105.46835 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1852 1.2160 0.0000 4 6 3.5514 1.2338 -0.0005 5 6 4.2320 0.0013 -0.0016 6 6 5.6356 -0.0563 -0.0017 7 6 6.2700 -1.2628 -0.0033 8 6 5.5502 -2.4509 -0.0038 9 6 4.1632 -2.4393 -0.0042 10 6 3.4080 -3.7055 0.0003 11 8 2.1922 -3.6883 0.0051 12 7 4.0653 -4.8822 -0.0008 13 6 3.3149 -6.1404 0.0042 14 6 4.2926 -7.3172 0.0011 15 1 5.1095 -7.1907 0.7117 16 6 3.6048 -8.6898 0.0913 17 6 4.6396 -9.1878 -0.9314 18 1 4.2235 -9.8606 -1.6813 19 7 5.8663 -9.7057 -0.3204 20 6 6.6329 -10.6197 -0.9928 21 1 6.3336 -10.9584 -1.9736 22 6 7.7955 -11.1100 -0.4141 23 7 8.1607 -10.6969 0.7810 24 14 8.8410 -12.3573 -1.3311 25 1 9.2997 -11.7699 -2.6155 26 1 10.0193 -12.7196 -0.5030 27 1 8.0348 -13.5743 -1.6033 28 6 4.7580 -7.7279 -1.4058 29 6 3.4788 -1.1972 -0.0027 30 7 2.1463 -1.1460 -0.0005 31 1 -0.3634 -0.0004 1.0277 32 1 -0.3634 0.8902 -0.5135 33 1 -0.3633 -0.8897 -0.5142 34 1 1.6323 2.1436 -0.0004 35 1 4.0943 2.1675 -0.0010 36 1 6.2127 0.8566 -0.0002 37 1 7.3495 -1.2954 -0.0037 38 1 6.0764 -3.3940 -0.0047 39 1 5.0352 -4.8958 -0.0049 40 1 2.6913 -6.1879 0.8969 41 1 2.6837 -6.1904 -0.8831 42 1 3.6966 -9.1607 1.0701 43 1 2.5822 -8.6912 -0.2860 44 1 6.1354 -9.4012 0.5604 45 1 8.9732 -11.0392 1.1852 46 1 4.0513 -7.4660 -2.1933 47 1 5.7795 -7.4235 -1.6340 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086397075.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:16:30 Heat of formation + Delta-G solvation = 53.109785 kcal Electronic energy + Delta-G solvation = -27802.353952 eV Core-core repulsion = 23950.889194 eV Total energy + Delta-G solvation = -3851.464758 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.27435 -39.51138 -38.40169 -37.39405 -34.57239 -33.74850 -33.18423 -32.23511 -30.82032 -29.96141 -28.19114 -27.23787 -25.03697 -24.28533 -23.96261 -23.19973 -22.72649 -21.59593 -20.43344 -18.56210 -18.37578 -17.90145 -17.24707 -16.73250 -16.21791 -15.61315 -15.36884 -15.06435 -14.95670 -14.69673 -14.37736 -14.16719 -14.01314 -13.84072 -13.40001 -13.20517 -13.16337 -12.98889 -12.86072 -12.48579 -12.34755 -12.21152 -11.89393 -11.68944 -11.63330 -11.36061 -11.03074 -10.83450 -10.77020 -10.46477 -10.21199 -10.15349 -9.86190 -9.68527 -9.49437 -9.25434 -9.01778 -8.91866 -8.86076 -8.51882 -7.00190 -5.81033 -3.09901 -0.13782 0.49698 1.47473 2.45946 3.16519 3.20167 3.42100 3.46614 3.47493 3.88917 3.90640 4.22317 4.32566 4.45787 4.52551 4.55514 4.68014 4.76670 4.95006 5.00543 5.10001 5.12129 5.20579 5.26388 5.35723 5.37951 5.45682 5.54923 5.59542 5.66558 5.71916 5.74342 5.78457 5.86466 5.90185 5.99278 6.02876 6.14352 6.18383 6.24495 6.39495 6.46755 6.50866 6.62703 6.76153 6.92927 7.05968 7.60064 7.68386 7.81035 8.37130 8.38261 9.48807 10.06668 10.41014 11.41330 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.019772 B = 0.002035 C = 0.001881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1415.828836 B =13754.563195 C =14878.989495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.157 3.843 3 C -0.173 4.173 4 C -0.056 4.056 5 C -0.118 4.118 6 C -0.071 4.071 7 C -0.127 4.127 8 C -0.060 4.060 9 C -0.109 4.109 10 C 0.550 3.450 11 O -0.504 6.504 12 N -0.725 5.725 13 C 0.134 3.866 14 C -0.120 4.120 15 H 0.092 0.908 16 C -0.147 4.147 17 C 0.167 3.833 18 H 0.062 0.938 19 N -0.706 5.706 20 C -0.242 4.242 21 H 0.072 0.928 22 C -0.013 4.013 23 N -0.933 5.933 24 Si 0.909 3.091 25 H -0.286 1.286 26 H -0.291 1.291 27 H -0.285 1.285 28 C -0.168 4.168 29 C 0.168 3.832 30 N -0.439 5.439 31 H 0.080 0.920 32 H 0.075 0.925 33 H 0.082 0.918 34 H 0.137 0.863 35 H 0.140 0.860 36 H 0.133 0.867 37 H 0.136 0.864 38 H 0.137 0.863 39 H 0.398 0.602 40 H 0.063 0.937 41 H 0.066 0.934 42 H 0.068 0.932 43 H 0.077 0.923 44 H 0.385 0.615 45 H 0.256 0.744 46 H 0.067 0.933 47 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.364 27.328 -0.783 28.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.005 3.995 3 C -0.193 4.193 4 C -0.082 4.082 5 C -0.120 4.120 6 C -0.090 4.090 7 C -0.145 4.145 8 C -0.080 4.080 9 C -0.113 4.113 10 C 0.335 3.665 11 O -0.379 6.379 12 N -0.378 5.378 13 C 0.011 3.989 14 C -0.138 4.138 15 H 0.110 0.890 16 C -0.187 4.187 17 C 0.055 3.945 18 H 0.080 0.920 19 N -0.344 5.344 20 C -0.373 4.373 21 H 0.089 0.911 22 C -0.209 4.209 23 N -0.581 5.581 24 Si 0.740 3.260 25 H -0.212 1.212 26 H -0.217 1.217 27 H -0.212 1.212 28 C -0.209 4.209 29 C 0.045 3.955 30 N -0.147 5.147 31 H 0.099 0.901 32 H 0.093 0.907 33 H 0.101 0.899 34 H 0.155 0.845 35 H 0.158 0.842 36 H 0.151 0.849 37 H 0.154 0.846 38 H 0.155 0.845 39 H 0.233 0.767 40 H 0.082 0.918 41 H 0.084 0.916 42 H 0.087 0.913 43 H 0.096 0.904 44 H 0.219 0.781 45 H 0.066 0.934 46 H 0.086 0.914 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -10.557 26.289 -0.877 28.344 hybrid contribution 1.880 0.355 -0.121 1.917 sum -8.677 26.644 -0.999 28.039 Atomic orbital electron populations 1.20786 0.88547 1.03726 1.03363 1.21718 0.97567 0.88067 0.92177 1.21780 0.95069 0.99404 1.03056 1.21450 0.94498 0.97005 0.95230 1.18827 0.94814 0.94009 1.04352 1.21161 0.92541 0.98732 0.96566 1.20870 1.00818 0.91864 1.00913 1.21541 0.92575 0.99408 0.94516 1.19959 0.93153 0.92641 1.05547 1.17916 0.87599 0.83067 0.77880 1.90835 1.12688 1.86954 1.47385 1.46014 1.10437 1.05698 1.75624 1.21451 0.94257 0.81431 1.01750 1.22710 0.98249 0.93131 0.99754 0.88955 1.23435 0.98854 0.94984 1.01438 1.21097 0.87722 0.91878 0.93815 0.91976 1.42165 1.22762 1.49552 1.19940 1.19250 1.02296 1.15991 0.99779 0.91050 1.24764 0.98605 1.00680 0.96869 1.69648 1.25765 1.47226 1.15465 0.86243 0.79826 0.81287 0.78676 1.21234 1.21700 1.21207 1.23912 1.00801 1.01686 0.94531 1.18569 0.89364 0.91336 0.96240 1.68169 1.07727 1.27688 1.11128 0.90095 0.90654 0.89895 0.84493 0.84193 0.84865 0.84609 0.84498 0.76688 0.91823 0.91570 0.91330 0.90440 0.78117 0.93409 0.91400 0.91551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.85 10.14 36.00 0.37 -0.49 16 2 C 0.16 1.71 6.78 -82.48 -0.56 1.15 16 3 C -0.17 -1.38 9.64 -39.79 -0.38 -1.77 16 4 C -0.06 -0.44 9.89 -39.20 -0.39 -0.83 16 5 C -0.12 -1.20 5.74 -106.83 -0.61 -1.82 16 6 C -0.07 -0.55 9.75 -39.43 -0.38 -0.94 16 7 C -0.13 -1.00 9.93 -40.02 -0.40 -1.40 16 8 C -0.06 -0.59 9.52 -39.16 -0.37 -0.96 16 9 C -0.11 -1.44 5.91 -104.61 -0.62 -2.06 16 10 C 0.55 8.42 7.76 -12.51 -0.10 8.33 16 11 O -0.50 -9.44 15.19 5.28 0.08 -9.36 16 12 N -0.72 -9.72 5.51 -61.38 -0.34 -10.06 16 13 C 0.13 1.90 5.50 -4.04 -0.02 1.88 16 14 C -0.12 -1.82 3.62 -89.81 -0.33 -2.14 16 15 H 0.09 1.49 8.14 -51.93 -0.42 1.07 16 16 C -0.15 -2.39 7.39 -25.92 -0.19 -2.59 16 17 C 0.17 3.27 4.57 -67.02 -0.31 2.96 16 18 H 0.06 1.23 8.10 -51.93 -0.42 0.80 16 19 N -0.71 -17.31 5.31 -52.55 -0.28 -17.59 16 20 C -0.24 -6.63 9.97 -15.06 -0.15 -6.78 16 21 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 22 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 23 N -0.93 -27.68 13.06 55.49 0.72 -26.96 16 24 Si 0.91 22.11 29.55 -169.99 -5.02 17.09 16 25 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 26 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 27 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 28 C -0.17 -2.82 7.44 -25.83 -0.19 -3.01 16 29 C 0.17 2.27 6.61 -84.58 -0.56 1.72 16 30 N -0.44 -6.37 8.33 -7.01 -0.06 -6.43 16 31 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.07 0.39 8.07 -51.93 -0.42 -0.03 16 33 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.14 0.64 8.06 -52.49 -0.42 0.22 16 35 H 0.14 0.61 8.06 -52.48 -0.42 0.18 16 36 H 0.13 0.62 8.06 -52.49 -0.42 0.19 16 37 H 0.14 0.71 8.06 -52.49 -0.42 0.29 16 38 H 0.14 1.08 6.36 -52.49 -0.33 0.75 16 39 H 0.40 4.52 6.50 -40.82 -0.27 4.26 16 40 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 41 H 0.07 0.98 7.87 -51.93 -0.41 0.57 16 42 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 43 H 0.08 1.10 8.10 -51.93 -0.42 0.68 16 44 H 0.38 9.97 7.90 -40.82 -0.32 9.65 16 45 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 46 H 0.07 1.04 7.92 -51.93 -0.41 0.63 16 47 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 LS Contribution 391.98 15.07 5.91 5.91 Total: -1.00 -34.84 391.98 -11.05 -45.89 By element: Atomic # 1 Polarization: 17.49 SS G_CDS: -6.78 Total: 10.71 kcal Atomic # 6 Polarization: -3.91 SS G_CDS: -5.29 Total: -9.20 kcal Atomic # 7 Polarization: -61.09 SS G_CDS: 0.05 Total: -61.04 kcal Atomic # 8 Polarization: -9.44 SS G_CDS: 0.08 Total: -9.36 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -34.84 -11.05 -45.89 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086397075.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.000 kcal (2) G-P(sol) polarization free energy of solvation -34.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.891 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds