Wall clock time and date at job start Tue Mar 31 2020 22:16:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.39232 * 119.15048 * 2 1 4 4 C 1.36635 * 119.89862 * 180.02562 * 3 2 1 5 5 C 1.40793 * 118.15794 * 0.02562 * 4 3 2 6 6 C 1.40478 * 121.25382 * 180.02562 * 5 4 3 7 7 C 1.36317 * 120.08608 * 180.02562 * 6 5 4 8 8 C 1.38915 * 121.05164 * 359.95131 * 7 6 5 9 9 C 1.38708 * 120.72964 * 0.06660 * 8 7 6 10 10 C 1.47436 * 120.32935 * 180.22842 * 9 8 7 11 11 O 1.21599 * 119.99841 * 179.72158 * 10 9 8 12 12 N 1.34776 * 120.00158 * 359.72940 * 10 9 8 13 13 C 1.46504 * 120.00133 * 179.97438 * 12 10 9 14 14 C 1.52995 * 109.47019 * 179.97438 * 13 12 10 15 15 H 1.09004 * 112.84760 * 45.33866 * 14 13 12 16 16 C 1.53786 * 113.61333 * 176.52830 * 14 13 12 17 17 C 1.53778 * 87.08113 * 139.98530 * 16 14 13 18 18 H 1.09003 * 113.61457 * 219.93639 * 17 16 14 19 19 N 1.46505 * 113.61431 * 89.11574 * 17 16 14 20 20 C 1.36937 * 119.99563 * 154.99881 * 19 17 16 21 21 H 1.07994 * 120.00602 * 0.02562 * 20 19 17 22 22 C 1.38818 * 119.99472 * 179.97438 * 20 19 17 23 23 N 1.31615 * 120.00017 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 119.99664 * 179.97438 * 22 20 19 25 25 H 1.48496 * 109.46970 * 60.00085 * 24 22 20 26 26 H 1.48502 * 109.46846 * 180.02562 * 24 22 20 27 27 H 1.48503 * 109.47101 * 300.00218 * 24 22 20 28 28 C 1.53779 * 113.61958 * 274.13647 * 14 13 12 29 29 C 1.41548 * 118.94633 * 0.02562 * 5 4 3 30 30 N 1.31227 * 119.15406 * 180.02562 * 2 1 3 31 31 H 1.09004 * 109.47272 * 269.97865 * 1 2 3 32 32 H 1.09001 * 109.47277 * 29.98034 * 1 2 3 33 33 H 1.08993 * 109.47183 * 149.97540 * 1 2 3 34 34 H 1.07994 * 120.05274 * 359.97438 * 3 2 1 35 35 H 1.08005 * 120.92179 * 179.97438 * 4 3 2 36 36 H 1.08001 * 119.95614 * 0.04266 * 6 5 4 37 37 H 1.07998 * 119.47166 * 179.97438 * 7 6 5 38 38 H 1.07995 * 119.63276 * 180.02562 * 8 7 6 39 39 H 0.97004 * 119.99570 * 359.97438 * 12 10 9 40 40 H 1.09000 * 109.46729 * 299.99827 * 13 12 10 41 41 H 1.09006 * 109.46448 * 59.99610 * 13 12 10 42 42 H 1.09000 * 113.61399 * 254.53292 * 16 14 13 43 43 H 1.09000 * 113.60995 * 25.43534 * 16 14 13 44 44 H 0.97000 * 119.99993 * 334.99994 * 19 17 16 45 45 H 0.96998 * 119.99887 * 180.02562 * 23 22 20 46 46 H 1.09005 * 113.61321 * 334.57096 * 28 14 13 47 47 H 1.09004 * 113.61225 * 105.46835 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1852 1.2160 0.0000 4 6 3.5514 1.2338 -0.0005 5 6 4.2320 0.0013 -0.0016 6 6 5.6356 -0.0563 -0.0017 7 6 6.2700 -1.2628 -0.0033 8 6 5.5502 -2.4509 -0.0038 9 6 4.1632 -2.4393 -0.0042 10 6 3.4080 -3.7055 0.0003 11 8 2.1922 -3.6883 0.0051 12 7 4.0653 -4.8822 -0.0008 13 6 3.3149 -6.1404 0.0042 14 6 4.2926 -7.3172 0.0011 15 1 5.1095 -7.1907 0.7117 16 6 3.6048 -8.6898 0.0913 17 6 4.6396 -9.1878 -0.9314 18 1 4.2235 -9.8606 -1.6813 19 7 5.8663 -9.7057 -0.3204 20 6 6.6329 -10.6197 -0.9928 21 1 6.3336 -10.9584 -1.9736 22 6 7.7955 -11.1100 -0.4141 23 7 8.1607 -10.6969 0.7810 24 14 8.8410 -12.3573 -1.3311 25 1 9.2997 -11.7699 -2.6155 26 1 10.0193 -12.7196 -0.5030 27 1 8.0348 -13.5743 -1.6033 28 6 4.7580 -7.7279 -1.4058 29 6 3.4788 -1.1972 -0.0027 30 7 2.1463 -1.1460 -0.0005 31 1 -0.3634 -0.0004 1.0277 32 1 -0.3634 0.8902 -0.5135 33 1 -0.3633 -0.8897 -0.5142 34 1 1.6323 2.1436 -0.0004 35 1 4.0943 2.1675 -0.0010 36 1 6.2127 0.8566 -0.0002 37 1 7.3495 -1.2954 -0.0037 38 1 6.0764 -3.3940 -0.0047 39 1 5.0352 -4.8958 -0.0049 40 1 2.6913 -6.1879 0.8969 41 1 2.6837 -6.1904 -0.8831 42 1 3.6966 -9.1607 1.0701 43 1 2.5822 -8.6912 -0.2860 44 1 6.1354 -9.4012 0.5604 45 1 8.9732 -11.0392 1.1852 46 1 4.0513 -7.4660 -2.1933 47 1 5.7795 -7.4235 -1.6340 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086397075.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:16:29 Heat of formation + Delta-G solvation = 30.685898 kcal Electronic energy + Delta-G solvation = -27803.326325 eV Core-core repulsion = 23950.889194 eV Total energy + Delta-G solvation = -3852.437131 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.02340 -40.67910 -39.73551 -38.14032 -35.99571 -34.96997 -34.43214 -32.92644 -32.17989 -31.27984 -28.90655 -28.52646 -26.44751 -25.78270 -24.94568 -24.34303 -23.38722 -22.93405 -21.45220 -19.90119 -19.36519 -19.08605 -18.77914 -17.58030 -17.06534 -16.76508 -16.54449 -16.42977 -15.86600 -15.70546 -15.67159 -15.50713 -15.02590 -14.81247 -14.66629 -14.56995 -14.08644 -13.89716 -13.77276 -13.65815 -13.29165 -13.12093 -12.98445 -12.92478 -12.90774 -12.62058 -12.32641 -12.29946 -12.19715 -12.06832 -11.55792 -11.49579 -11.48331 -11.12264 -10.92539 -10.78897 -10.12939 -10.08111 -9.69635 -9.26505 -8.99693 -7.94559 -5.22932 -0.84349 -0.19204 0.74855 1.48415 1.50967 1.57033 1.75207 2.14394 2.20260 2.56357 3.12571 3.22026 3.37475 3.53261 3.67572 3.71731 3.78210 3.80780 3.87665 3.96365 3.96893 4.13657 4.18826 4.31409 4.35411 4.39163 4.43215 4.59630 4.69901 4.72554 4.76016 4.79437 4.92035 4.93729 4.96239 4.98023 5.08097 5.10971 5.16924 5.21048 5.28088 5.34620 5.35541 5.48775 5.54313 5.58623 5.65212 5.83678 6.28738 6.54230 7.08872 7.27364 7.33881 8.10576 8.33645 9.28389 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.019772 B = 0.002035 C = 0.001881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1415.828836 B =13754.563195 C =14878.989495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.140 3.860 3 C -0.176 4.176 4 C -0.046 4.046 5 C -0.138 4.138 6 C -0.052 4.052 7 C -0.136 4.136 8 C -0.048 4.048 9 C -0.155 4.155 10 C 0.547 3.453 11 O -0.550 6.550 12 N -0.718 5.718 13 C 0.144 3.856 14 C -0.101 4.101 15 H 0.083 0.917 16 C -0.135 4.135 17 C 0.146 3.854 18 H 0.060 0.940 19 N -0.719 5.719 20 C -0.244 4.244 21 H 0.076 0.924 22 C -0.075 4.075 23 N -0.968 5.968 24 Si 0.973 3.027 25 H -0.278 1.278 26 H -0.296 1.296 27 H -0.279 1.279 28 C -0.153 4.153 29 C 0.138 3.862 30 N -0.499 5.499 31 H 0.087 0.913 32 H 0.108 0.892 33 H 0.058 0.942 34 H 0.175 0.825 35 H 0.184 0.816 36 H 0.176 0.824 37 H 0.169 0.831 38 H 0.150 0.850 39 H 0.408 0.592 40 H 0.059 0.941 41 H 0.064 0.936 42 H 0.059 0.941 43 H 0.103 0.897 44 H 0.375 0.625 45 H 0.251 0.749 46 H 0.088 0.912 47 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.452 30.179 -1.612 31.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.011 4.011 3 C -0.196 4.196 4 C -0.071 4.071 5 C -0.140 4.140 6 C -0.070 4.070 7 C -0.153 4.153 8 C -0.068 4.068 9 C -0.159 4.159 10 C 0.335 3.665 11 O -0.429 6.429 12 N -0.371 5.371 13 C 0.020 3.980 14 C -0.120 4.120 15 H 0.102 0.898 16 C -0.174 4.174 17 C 0.036 3.964 18 H 0.078 0.922 19 N -0.357 5.357 20 C -0.375 4.375 21 H 0.094 0.906 22 C -0.267 4.267 23 N -0.619 5.619 24 Si 0.802 3.198 25 H -0.204 1.204 26 H -0.222 1.222 27 H -0.206 1.206 28 C -0.193 4.193 29 C 0.015 3.985 30 N -0.208 5.208 31 H 0.105 0.895 32 H 0.126 0.874 33 H 0.077 0.923 34 H 0.192 0.808 35 H 0.201 0.799 36 H 0.193 0.807 37 H 0.186 0.814 38 H 0.167 0.833 39 H 0.245 0.755 40 H 0.077 0.923 41 H 0.082 0.918 42 H 0.077 0.923 43 H 0.122 0.878 44 H 0.207 0.793 45 H 0.060 0.940 46 H 0.107 0.893 47 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -9.663 29.151 -1.741 30.760 hybrid contribution 1.539 -0.423 0.111 1.600 sum -8.124 28.728 -1.630 29.899 Atomic orbital electron populations 1.20855 0.87413 1.04086 1.03832 1.22289 0.98730 0.88633 0.91494 1.22129 0.95646 0.99506 1.02307 1.21980 0.94622 0.97613 0.92931 1.19182 0.96052 0.93876 1.04864 1.21669 0.91657 1.00342 0.93354 1.21261 1.02335 0.91100 1.00649 1.21809 0.91384 1.01151 0.92455 1.19912 0.94394 0.91644 1.09918 1.18380 0.87321 0.84101 0.76707 1.90790 1.14618 1.87650 1.49802 1.45927 1.10877 1.05132 1.75162 1.21263 0.93833 0.81389 1.01472 1.22495 0.97866 0.93157 0.98508 0.89844 1.23346 0.99313 0.94737 1.00007 1.21397 0.86969 0.93083 0.94975 0.92174 1.42287 1.24150 1.49626 1.19634 1.19632 1.02362 1.15680 0.99866 0.90616 1.25553 1.00188 1.03098 0.97890 1.69802 1.26147 1.48876 1.17029 0.85216 0.77920 0.79120 0.77522 1.20381 1.22225 1.20550 1.23732 1.00570 0.99132 0.95886 1.18914 0.89643 0.92681 0.97274 1.68106 1.08948 1.29960 1.13800 0.89494 0.87376 0.92339 0.80808 0.79878 0.80709 0.81359 0.83265 0.75536 0.92257 0.91765 0.92265 0.87837 0.79317 0.94009 0.89350 0.93051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.70 10.14 71.23 0.72 -0.97 16 2 C 0.14 3.07 6.78 42.89 0.29 3.36 16 3 C -0.18 -2.42 9.64 22.13 0.21 -2.20 16 4 C -0.05 -0.57 9.89 22.52 0.22 -0.35 16 5 C -0.14 -2.56 5.74 -21.29 -0.12 -2.68 16 6 C -0.05 -0.63 9.75 22.37 0.22 -0.41 16 7 C -0.14 -1.77 9.93 21.98 0.22 -1.55 16 8 C -0.05 -0.90 9.52 22.54 0.21 -0.69 16 9 C -0.15 -4.23 5.91 -19.86 -0.12 -4.35 16 10 C 0.55 17.72 7.76 86.67 0.67 18.39 16 11 O -0.55 -22.14 15.19 -4.03 -0.06 -22.20 16 12 N -0.72 -19.75 5.51 -466.36 -2.57 -22.32 16 13 C 0.14 4.11 5.50 86.38 0.47 4.59 16 14 C -0.10 -3.06 3.62 -10.27 -0.04 -3.10 16 15 H 0.08 2.71 8.14 -2.38 -0.02 2.69 16 16 C -0.13 -4.29 7.39 31.12 0.23 -4.06 16 17 C 0.15 5.66 4.57 45.58 0.21 5.87 16 18 H 0.06 2.34 8.10 -2.39 -0.02 2.32 16 19 N -0.72 -35.72 5.31 -320.15 -1.70 -37.42 16 20 C -0.24 -13.41 9.97 84.03 0.84 -12.57 16 21 H 0.08 4.01 7.83 -2.91 -0.02 3.98 16 22 C -0.08 -4.26 5.50 84.86 0.47 -3.80 16 23 N -0.97 -58.49 13.06 21.65 0.28 -58.20 16 24 Si 0.97 45.74 29.55 68.60 2.03 47.76 16 25 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 26 H -0.30 -14.02 7.11 99.48 0.71 -13.32 16 27 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 28 C -0.15 -5.02 7.44 31.18 0.23 -4.79 16 29 C 0.14 3.83 6.61 40.61 0.27 4.10 16 30 N -0.50 -15.33 8.33 -176.10 -1.47 -16.80 16 31 H 0.09 1.25 8.14 -2.38 -0.02 1.23 16 32 H 0.11 0.95 8.07 -2.39 -0.02 0.93 16 33 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 34 H 0.17 0.95 8.06 -2.91 -0.02 0.93 16 35 H 0.18 0.57 8.06 -2.91 -0.02 0.55 16 36 H 0.18 0.61 8.06 -2.91 -0.02 0.59 16 37 H 0.17 1.07 8.06 -2.91 -0.02 1.05 16 38 H 0.15 2.24 6.36 -2.91 -0.02 2.22 16 39 H 0.41 9.35 6.50 -92.71 -0.60 8.75 16 40 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 41 H 0.06 1.89 7.87 -2.38 -0.02 1.87 16 42 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 43 H 0.10 2.78 8.10 -2.39 -0.02 2.76 16 44 H 0.37 19.88 7.90 -92.71 -0.73 19.15 16 45 H 0.25 14.77 8.31 -92.71 -0.77 13.99 16 46 H 0.09 2.57 7.92 -2.38 -0.02 2.55 16 47 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 Total: -1.00 -80.60 391.98 1.40 -79.20 By element: Atomic # 1 Polarization: 35.52 SS G_CDS: -0.33 Total: 35.18 kcal Atomic # 6 Polarization: -10.43 SS G_CDS: 5.22 Total: -5.21 kcal Atomic # 7 Polarization: -129.28 SS G_CDS: -5.45 Total: -134.74 kcal Atomic # 8 Polarization: -22.14 SS G_CDS: -0.06 Total: -22.20 kcal Atomic # 14 Polarization: 45.74 SS G_CDS: 2.03 Total: 47.76 kcal Total: -80.60 1.40 -79.20 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086397075.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.886 kcal (2) G-P(sol) polarization free energy of solvation -80.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.200 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds