Wall clock time and date at job start Tue Mar 31 2020 22:16:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.39315 * 119.11589 * 2 1 4 4 C 1.36585 * 119.90674 * 180.02562 * 3 2 1 5 5 C 1.40887 * 118.15486 * 359.74737 * 4 3 2 6 6 C 1.40181 * 121.21646 * 179.67938 * 5 4 3 7 7 C 1.38549 * 119.40226 * 180.24093 * 6 5 4 8 8 C 1.47772 * 119.80607 * 180.27977 * 7 6 5 9 9 O 1.21566 * 119.99966 * 359.97438 * 8 7 6 10 10 N 1.34773 * 119.99969 * 180.02562 * 8 7 6 11 11 C 1.46500 * 120.00030 * 179.97438 * 10 8 7 12 12 C 1.53001 * 109.47527 * 179.97438 * 11 10 8 13 13 H 1.09005 * 112.84723 * 43.80454 * 12 11 10 14 14 C 1.53776 * 113.61536 * 175.00006 * 12 11 10 15 15 C 1.53785 * 87.08066 * 139.98381 * 14 12 11 16 16 H 1.09007 * 113.60969 * 219.93713 * 15 14 12 17 17 N 1.46492 * 113.61568 * 89.11422 * 15 14 12 18 18 C 1.36942 * 119.99659 * 154.99942 * 17 15 14 19 19 H 1.07993 * 120.00125 * 0.02562 * 18 17 15 20 20 C 1.38819 * 119.99986 * 179.97438 * 18 17 15 21 21 N 1.31607 * 120.00200 * 180.02562 * 20 18 17 22 22 Si 1.86799 * 119.99818 * 0.02562 * 20 18 17 23 23 H 1.48495 * 109.47313 * 89.99497 * 22 20 18 24 24 H 1.48500 * 109.47242 * 209.99975 * 22 20 18 25 25 H 1.48505 * 109.47441 * 329.99573 * 22 20 18 26 26 C 1.53780 * 113.61291 * 272.49781 * 12 11 10 27 27 C 1.40632 * 120.39101 * 0.29829 * 7 6 5 28 28 C 1.35699 * 120.92279 * 359.97438 * 27 7 6 29 29 C 1.40766 * 120.11277 * 0.02562 * 28 27 7 30 30 N 1.31123 * 119.11842 * 179.97438 * 2 1 3 31 31 H 1.09005 * 109.47092 * 270.02514 * 1 2 3 32 32 H 1.08999 * 109.46783 * 30.02210 * 1 2 3 33 33 H 1.08992 * 109.47207 * 150.02541 * 1 2 3 34 34 H 1.08001 * 120.04432 * 359.97438 * 3 2 1 35 35 H 1.07998 * 120.91919 * 180.02562 * 4 3 2 36 36 H 1.08002 * 120.30139 * 0.51990 * 6 5 4 37 37 H 0.97003 * 120.00189 * 359.97438 * 10 8 7 38 38 H 1.09000 * 109.47152 * 299.99889 * 11 10 8 39 39 H 1.08997 * 109.47419 * 59.99667 * 11 10 8 40 40 H 1.09010 * 113.61375 * 254.52823 * 14 12 11 41 41 H 1.08995 * 113.61483 * 25.43298 * 14 12 11 42 42 H 0.96998 * 120.00696 * 335.00156 * 17 15 14 43 43 H 0.97005 * 120.00364 * 180.02562 * 21 20 18 44 44 H 1.08996 * 113.61419 * 334.56484 * 26 12 11 45 45 H 1.09004 * 113.61195 * 105.46655 * 26 12 11 46 46 H 1.07996 * 119.54083 * 180.02562 * 27 7 6 47 47 H 1.07993 * 119.94665 * 179.97438 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1849 1.2171 0.0000 4 6 3.5506 1.2360 -0.0005 5 6 4.2324 0.0031 0.0044 6 6 5.6331 -0.0525 -0.0025 7 6 6.2649 -1.2855 -0.0024 8 6 7.7411 -1.3545 -0.0034 9 8 8.3974 -0.3312 -0.0048 10 7 8.3597 -2.5519 -0.0038 11 6 9.8231 -2.6203 -0.0054 12 6 10.2653 -4.0850 -0.0049 13 1 9.6928 -4.7002 -0.6992 14 6 11.7869 -4.2691 -0.1293 15 6 11.6551 -5.4016 0.9028 16 1 12.4629 -5.4218 1.6344 17 7 11.3962 -6.7135 0.3046 18 6 11.7510 -7.8537 0.9750 19 1 12.2212 -7.7857 1.9448 20 6 11.5053 -9.0970 0.4084 21 7 11.8458 -10.1927 1.0529 22 14 10.6914 -9.2146 -1.2688 23 1 11.7341 -9.2151 -2.3261 24 1 9.9037 -10.4708 -1.3498 25 1 9.7892 -8.0513 -1.4640 26 6 10.3861 -4.6915 1.4031 27 6 5.5098 -2.4719 -0.0017 28 6 4.1533 -2.4351 -0.0006 29 6 3.4804 -1.1986 -0.0007 30 7 2.1451 -1.1455 0.0005 31 1 -0.3633 0.0005 1.0277 32 1 -0.3633 0.8898 -0.5142 33 1 -0.3633 -0.8901 -0.5134 34 1 1.6312 2.1444 -0.0004 35 1 4.0927 2.1700 -0.0001 36 1 6.2146 0.8576 -0.0034 37 1 7.8360 -3.3684 -0.0031 38 1 10.2091 -2.1242 -0.8959 39 1 10.2110 -2.1237 0.8840 40 1 12.1064 -4.6108 -1.1139 41 1 12.3609 -3.4152 0.2304 42 1 10.9736 -6.7747 -0.5664 43 1 11.6744 -11.0615 0.6569 44 1 10.5771 -3.9530 2.1817 45 1 9.5746 -5.3740 1.6556 46 1 6.0165 -3.4256 -0.0012 47 1 3.5890 -3.3558 -0.0005 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086509536.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:16:40 Heat of formation + Delta-G solvation = 48.155107 kcal Electronic energy + Delta-G solvation = -27348.089766 eV Core-core repulsion = 23496.410157 eV Total energy + Delta-G solvation = -3851.679609 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.36085 -39.99022 -38.75409 -37.28133 -34.92608 -33.96345 -33.31763 -32.47944 -30.72305 -30.49924 -28.93295 -27.29258 -25.21670 -24.34299 -24.02613 -23.16461 -22.46868 -21.75494 -21.03299 -18.97183 -18.41583 -18.09977 -17.67372 -16.88714 -16.31004 -15.90011 -15.54537 -15.15226 -14.98243 -14.83979 -14.50317 -14.30461 -14.22650 -13.85075 -13.71151 -13.60930 -13.43209 -13.32007 -12.82711 -12.68298 -12.55372 -12.46868 -12.09261 -11.86240 -11.72486 -11.55809 -11.39282 -11.02932 -10.94563 -10.54976 -10.39337 -10.21416 -9.98697 -9.93099 -9.70203 -9.57375 -9.23989 -9.08846 -8.94762 -8.65386 -7.34074 -5.82965 -3.19347 -0.18548 0.24557 1.49169 2.05124 2.97980 3.03008 3.31346 3.34708 3.40724 3.68303 3.69237 4.10130 4.19263 4.32507 4.39460 4.52701 4.57080 4.66809 4.73805 4.87740 4.90811 4.92128 5.03127 5.05095 5.10664 5.34202 5.35912 5.38045 5.44301 5.45423 5.46567 5.58858 5.58942 5.71468 5.79071 5.84599 5.85960 5.90291 6.06850 6.08900 6.19417 6.24815 6.33741 6.44805 6.58410 6.69489 6.85385 7.33616 7.48112 7.94875 8.01540 8.36605 9.14345 9.86505 10.05593 11.35079 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.015984 B = 0.002008 C = 0.001834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1751.279471 B =13938.374537 C =15266.395107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C 0.167 3.833 3 C -0.178 4.178 4 C -0.043 4.043 5 C -0.120 4.120 6 C -0.024 4.024 7 C -0.135 4.135 8 C 0.556 3.444 9 O -0.541 6.541 10 N -0.718 5.718 11 C 0.131 3.869 12 C -0.125 4.125 13 H 0.090 0.910 14 C -0.148 4.148 15 C 0.172 3.828 16 H 0.072 0.928 17 N -0.730 5.730 18 C -0.248 4.248 19 H 0.092 0.908 20 C 0.006 3.994 21 N -0.931 5.931 22 Si 0.884 3.116 23 H -0.284 1.284 24 H -0.290 1.290 25 H -0.278 1.278 26 C -0.167 4.167 27 C -0.073 4.073 28 C -0.098 4.098 29 C 0.150 3.850 30 N -0.480 5.480 31 H 0.083 0.917 32 H 0.078 0.922 33 H 0.080 0.920 34 H 0.140 0.860 35 H 0.143 0.857 36 H 0.145 0.855 37 H 0.402 0.598 38 H 0.066 0.934 39 H 0.070 0.930 40 H 0.067 0.933 41 H 0.082 0.918 42 H 0.362 0.638 43 H 0.260 0.740 44 H 0.073 0.927 45 H 0.068 0.932 46 H 0.135 0.865 47 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.643 25.012 -3.191 32.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.014 3.986 3 C -0.198 4.198 4 C -0.069 4.069 5 C -0.122 4.122 6 C -0.044 4.044 7 C -0.138 4.138 8 C 0.343 3.657 9 O -0.420 6.420 10 N -0.369 5.369 11 C 0.008 3.992 12 C -0.143 4.143 13 H 0.108 0.892 14 C -0.188 4.188 15 C 0.061 3.939 16 H 0.090 0.910 17 N -0.370 5.370 18 C -0.377 4.377 19 H 0.110 0.890 20 C -0.190 4.190 21 N -0.578 5.578 22 Si 0.715 3.285 23 H -0.210 1.210 24 H -0.217 1.217 25 H -0.204 1.204 26 C -0.208 4.208 27 C -0.094 4.094 28 C -0.116 4.116 29 C 0.028 3.972 30 N -0.189 5.189 31 H 0.101 0.899 32 H 0.097 0.903 33 H 0.099 0.901 34 H 0.158 0.842 35 H 0.161 0.839 36 H 0.163 0.837 37 H 0.237 0.763 38 H 0.085 0.915 39 H 0.089 0.911 40 H 0.086 0.914 41 H 0.101 0.899 42 H 0.195 0.805 43 H 0.070 0.930 44 H 0.091 0.909 45 H 0.087 0.913 46 H 0.153 0.847 47 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -20.412 24.648 -3.024 32.145 hybrid contribution -0.434 0.135 -1.210 1.292 sum -20.846 24.783 -4.234 32.660 Atomic orbital electron populations 1.20823 0.88405 1.03880 1.03518 1.21602 0.97329 0.88189 0.91457 1.21743 0.94993 0.99387 1.03641 1.21571 0.94526 0.97302 0.93453 1.18799 0.94340 0.94376 1.04714 1.21433 0.92265 0.98052 0.92601 1.19967 0.93343 0.94145 1.06312 1.18173 0.87063 0.83812 0.76637 1.90772 1.66767 1.34212 1.50251 1.45995 1.08472 1.08050 1.74392 1.21523 0.78305 0.97277 1.02119 1.22769 0.97991 0.93601 0.99969 0.89189 1.23463 0.93902 1.00098 1.01317 1.21005 0.94838 0.84263 0.93828 0.91015 1.42511 1.72685 1.01111 1.20667 1.19113 1.33372 0.83039 1.02207 0.89020 1.24684 1.00964 0.95258 0.98121 1.69692 1.52649 0.97015 1.38486 0.86561 0.79511 0.76951 0.85509 1.21015 1.21668 1.20413 1.23868 1.02540 0.99918 0.94446 1.20997 0.93895 0.97735 0.96730 1.20693 0.93730 0.96714 1.00497 1.18976 0.89133 0.92895 0.96147 1.67913 1.08294 1.28787 1.13908 0.89883 0.90334 0.90094 0.84243 0.83882 0.83692 0.76255 0.91538 0.91139 0.91388 0.89938 0.80530 0.92964 0.90887 0.91304 0.84681 0.83980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.51 10.14 36.01 0.37 -0.15 16 2 C 0.17 1.33 6.78 -82.49 -0.56 0.77 16 3 C -0.18 -1.14 9.64 -39.78 -0.38 -1.52 16 4 C -0.04 -0.31 9.89 -39.18 -0.39 -0.70 16 5 C -0.12 -1.17 5.74 -106.82 -0.61 -1.78 16 6 C -0.02 -0.24 9.35 -38.74 -0.36 -0.60 16 7 C -0.13 -1.45 5.87 -104.98 -0.62 -2.07 16 8 C 0.56 7.05 7.77 -12.36 -0.10 6.96 16 9 O -0.54 -8.52 16.31 5.31 0.09 -8.43 16 10 N -0.72 -8.18 5.50 -61.27 -0.34 -8.52 16 11 C 0.13 1.59 5.51 -4.04 -0.02 1.57 16 12 C -0.12 -1.66 3.63 -89.81 -0.33 -1.99 16 13 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 14 C -0.15 -2.13 7.39 -25.92 -0.19 -2.32 16 15 C 0.17 3.12 4.56 -67.12 -0.31 2.81 16 16 H 0.07 1.34 8.10 -51.93 -0.42 0.92 16 17 N -0.73 -16.51 5.11 -52.64 -0.27 -16.78 16 18 C -0.25 -6.80 10.45 -15.05 -0.16 -6.96 16 19 H 0.09 2.70 8.06 -52.49 -0.42 2.28 16 20 C 0.01 0.17 5.50 -17.43 -0.10 0.07 16 21 N -0.93 -28.77 13.97 55.49 0.78 -28.00 16 22 Si 0.88 21.55 27.74 -169.99 -4.71 16.84 16 23 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 24 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 25 H -0.28 -6.29 6.52 56.52 0.37 -5.92 16 26 C -0.17 -2.55 7.43 -25.92 -0.19 -2.74 16 27 C -0.07 -0.68 9.44 -39.59 -0.37 -1.05 16 28 C -0.10 -0.95 9.95 -39.54 -0.39 -1.34 16 29 C 0.15 1.61 6.61 -84.78 -0.56 1.05 16 30 N -0.48 -5.05 10.23 -7.16 -0.07 -5.12 16 31 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.08 0.21 8.07 -51.93 -0.42 -0.21 16 33 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 34 H 0.14 0.46 8.06 -52.49 -0.42 0.04 16 35 H 0.14 0.65 8.06 -52.49 -0.42 0.23 16 36 H 0.15 1.36 7.62 -52.49 -0.40 0.96 16 37 H 0.40 3.85 6.46 -40.82 -0.26 3.59 16 38 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.07 0.89 7.84 -51.93 -0.41 0.49 16 40 H 0.07 1.01 8.14 -51.92 -0.42 0.59 16 41 H 0.08 1.03 8.10 -51.93 -0.42 0.61 16 42 H 0.36 8.02 5.76 -40.82 -0.24 7.78 16 43 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 44 H 0.07 1.01 7.89 -51.93 -0.41 0.60 16 45 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 46 H 0.14 0.98 6.35 -52.49 -0.33 0.65 16 47 H 0.14 1.18 8.06 -52.49 -0.42 0.76 16 LS Contribution 390.81 15.07 5.89 5.89 Total: -1.00 -34.27 390.81 -10.62 -44.89 By element: Atomic # 1 Polarization: 15.93 SS G_CDS: -6.71 Total: 9.22 kcal Atomic # 6 Polarization: -4.72 SS G_CDS: -5.27 Total: -9.99 kcal Atomic # 7 Polarization: -58.52 SS G_CDS: 0.10 Total: -58.42 kcal Atomic # 8 Polarization: -8.52 SS G_CDS: 0.09 Total: -8.43 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -4.71 Total: 16.84 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -34.27 -10.62 -44.89 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086509536.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.049 kcal (2) G-P(sol) polarization free energy of solvation -34.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.894 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds