Wall clock time and date at job start Tue Mar 31 2020 22:16:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.39315 * 119.05991 * 2 1 4 4 C 1.38858 * 119.57813 * 179.72245 * 3 2 1 5 5 C 1.47902 * 121.11040 * 179.97438 * 4 3 2 6 6 O 1.21547 * 120.00195 * 174.14731 * 5 4 3 7 7 N 1.34778 * 120.00219 * 354.14922 * 5 4 3 8 8 C 1.46501 * 120.00365 * 180.02562 * 7 5 4 9 9 C 1.52997 * 109.46964 * 179.97438 * 8 7 5 10 10 H 1.08997 * 112.85121 * 316.18860 * 9 8 7 11 11 C 1.53781 * 113.61532 * 87.50414 * 9 8 7 12 12 C 1.53775 * 87.08363 * 139.97858 * 11 9 8 13 13 H 1.08999 * 113.61718 * 220.02046 * 12 11 9 14 14 N 1.46502 * 113.61876 * 89.11528 * 12 11 9 15 15 C 1.36931 * 120.00529 * 107.49986 * 14 12 11 16 16 H 1.08004 * 119.99511 * 0.02562 * 15 14 12 17 17 C 1.38811 * 120.00515 * 180.02562 * 15 14 12 18 18 N 1.31616 * 120.00012 * 180.02562 * 17 15 14 19 19 Si 1.86795 * 119.99639 * 0.02562 * 17 15 14 20 20 H 1.48501 * 109.47299 * 89.99989 * 19 17 15 21 21 H 1.48503 * 109.47075 * 209.99632 * 19 17 15 22 22 H 1.48500 * 109.47465 * 330.00103 * 19 17 15 23 23 C 1.53781 * 87.08185 * 334.56456 * 12 11 9 24 24 C 1.41823 * 117.77781 * 0.02562 * 4 3 2 25 25 C 1.40102 * 121.37199 * 180.02562 * 24 4 3 26 26 C 1.36249 * 119.64161 * 179.97438 * 25 24 4 27 27 C 1.39347 * 120.83856 * 0.02562 * 26 25 24 28 28 C 1.36065 * 121.04652 * 359.97438 * 27 26 25 29 29 C 1.40704 * 119.74471 * 0.02562 * 28 27 26 30 30 N 1.30976 * 119.06041 * 179.73090 * 2 1 3 31 31 H 1.09003 * 109.47126 * 90.00094 * 1 2 3 32 32 H 1.09004 * 109.46927 * 209.99847 * 1 2 3 33 33 H 1.08998 * 109.47314 * 330.00067 * 1 2 3 34 34 H 1.07996 * 120.21147 * 359.70106 * 3 2 1 35 35 H 0.97005 * 119.99717 * 359.97438 * 7 5 4 36 36 H 1.09005 * 109.46696 * 299.99519 * 8 7 5 37 37 H 1.08996 * 109.47329 * 59.99262 * 8 7 5 38 38 H 1.09003 * 113.61405 * 254.52500 * 11 9 8 39 39 H 1.08995 * 113.61757 * 25.42592 * 11 9 8 40 40 H 0.97003 * 119.99878 * 287.50661 * 14 12 11 41 41 H 0.97002 * 119.99702 * 180.02562 * 18 17 15 42 42 H 1.08994 * 113.61491 * 270.88758 * 23 12 11 43 43 H 1.09003 * 113.61508 * 139.97865 * 23 12 11 44 44 H 1.07998 * 120.17874 * 359.95472 * 25 24 4 45 45 H 1.08003 * 119.58241 * 179.97438 * 26 25 24 46 46 H 1.08004 * 119.47531 * 179.97438 * 27 26 25 47 47 H 1.08001 * 120.12538 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1837 1.2178 0.0000 4 6 3.5722 1.2303 0.0059 5 6 4.3249 2.5035 0.0055 6 8 5.5351 2.4941 0.1180 7 7 3.6689 3.6742 -0.1196 8 6 4.4145 4.9353 -0.1205 9 6 3.4394 6.1041 -0.2755 10 1 2.6791 5.9231 -1.0351 11 6 2.8704 6.6128 1.0596 12 6 3.0226 8.0341 0.4926 13 1 3.3807 8.7596 1.2231 14 7 1.8460 8.5009 -0.2449 15 6 1.0303 9.4560 0.3005 16 1 1.2547 9.8656 1.2744 17 6 -0.0848 9.8979 -0.3982 18 7 -0.8684 10.8163 0.1260 19 14 -0.4731 9.1890 -2.0822 20 1 -1.3488 7.9995 -1.9286 21 1 -1.1689 10.2133 -2.9019 22 1 0.7895 8.7906 -2.7548 23 6 4.1322 7.4704 -0.4106 24 6 4.2444 -0.0184 0.0111 25 6 5.6434 -0.0936 0.0177 26 6 6.2528 -1.3122 0.0231 27 6 5.5021 -2.4862 0.0216 28 6 4.1419 -2.4494 0.0153 29 6 3.4772 -1.2094 0.0095 30 7 2.1432 -1.1449 0.0054 31 1 -0.3633 0.0000 -1.0277 32 1 -0.3633 -0.8900 0.5138 33 1 -0.3634 0.8900 0.5138 34 1 1.6318 2.1461 -0.0049 35 1 2.7031 3.6817 -0.2097 36 1 4.9576 5.0369 0.8191 37 1 5.1208 4.9392 -0.9507 38 1 1.8347 6.3203 1.2326 39 1 3.5163 6.4122 1.9143 40 1 1.6446 8.1333 -1.1197 41 1 -1.6478 11.1248 -0.3621 42 1 5.1230 7.5042 0.0423 43 1 4.1151 7.8702 -1.4245 44 1 6.2357 0.8095 0.0181 45 1 7.3313 -1.3691 0.0277 46 1 6.0079 -3.4405 0.0256 47 1 3.5748 -3.3686 0.0146 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086547109.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:16:16 Heat of formation + Delta-G solvation = 55.675978 kcal Electronic energy + Delta-G solvation = -27986.084190 eV Core-core repulsion = 24134.730710 eV Total energy + Delta-G solvation = -3851.353480 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.47818 -39.77875 -38.69720 -37.70618 -35.02894 -33.84934 -33.27978 -32.35009 -30.89098 -30.32737 -28.24725 -27.68162 -25.27799 -24.89122 -23.75846 -23.01880 -22.74416 -21.78071 -20.80999 -18.76327 -18.33268 -17.87285 -17.66321 -17.57156 -16.11951 -15.77805 -15.66452 -15.19723 -15.10499 -14.90094 -14.72950 -14.46738 -14.01157 -13.73539 -13.66668 -13.47548 -13.38622 -13.31117 -12.87949 -12.62071 -12.58606 -12.13049 -11.93881 -11.71131 -11.68879 -11.66039 -11.44464 -10.98718 -10.81180 -10.63721 -10.60332 -10.31778 -10.11853 -9.77873 -9.65598 -9.50930 -9.29747 -9.04211 -8.98492 -8.54827 -7.37436 -5.85676 -3.22331 -0.24339 0.43716 1.40196 2.42037 2.77338 2.82954 3.29163 3.31253 3.38247 3.76415 3.78382 4.08237 4.24079 4.37619 4.49815 4.49901 4.73325 4.78507 4.82139 4.85906 4.96615 4.97570 5.05714 5.12851 5.25130 5.30542 5.32783 5.38390 5.39607 5.41012 5.58297 5.64983 5.72384 5.75084 5.78023 5.82822 6.00821 6.03831 6.08976 6.15647 6.19007 6.29408 6.39558 6.53383 6.54994 6.64017 6.80403 7.16943 7.53200 7.85827 7.91789 8.33853 9.11303 9.83406 10.02345 11.32339 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.015968 B = 0.002330 C = 0.002103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1753.049273 B =12014.577475 C =13311.562444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C 0.155 3.845 3 C -0.134 4.134 4 C -0.067 4.067 5 C 0.559 3.441 6 O -0.529 6.529 7 N -0.712 5.712 8 C 0.130 3.870 9 C -0.125 4.125 10 H 0.090 0.910 11 C -0.167 4.167 12 C 0.173 3.827 13 H 0.072 0.928 14 N -0.729 5.729 15 C -0.248 4.248 16 H 0.092 0.908 17 C 0.006 3.994 18 N -0.931 5.931 19 Si 0.884 3.116 20 H -0.284 1.284 21 H -0.290 1.290 22 H -0.277 1.277 23 C -0.148 4.148 24 C -0.072 4.072 25 C -0.098 4.098 26 C -0.122 4.122 27 C -0.096 4.096 28 C -0.101 4.101 29 C 0.130 3.870 30 N -0.461 5.461 31 H 0.084 0.916 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.144 0.856 35 H 0.403 0.597 36 H 0.073 0.927 37 H 0.069 0.931 38 H 0.069 0.931 39 H 0.073 0.927 40 H 0.362 0.638 41 H 0.260 0.740 42 H 0.082 0.918 43 H 0.068 0.932 44 H 0.169 0.831 45 H 0.129 0.871 46 H 0.130 0.870 47 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.429 -26.051 -0.985 28.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.002 3.998 3 C -0.155 4.155 4 C -0.078 4.078 5 C 0.345 3.655 6 O -0.407 6.407 7 N -0.363 5.363 8 C 0.007 3.993 9 C -0.144 4.144 10 H 0.109 0.891 11 C -0.208 4.208 12 C 0.061 3.939 13 H 0.090 0.910 14 N -0.370 5.370 15 C -0.378 4.378 16 H 0.110 0.890 17 C -0.190 4.190 18 N -0.578 5.578 19 Si 0.714 3.286 20 H -0.210 1.210 21 H -0.216 1.216 22 H -0.203 1.203 23 C -0.188 4.188 24 C -0.074 4.074 25 C -0.116 4.116 26 C -0.140 4.140 27 C -0.116 4.116 28 C -0.120 4.120 29 C 0.008 3.992 30 N -0.171 5.171 31 H 0.102 0.898 32 H 0.100 0.900 33 H 0.100 0.900 34 H 0.162 0.838 35 H 0.238 0.762 36 H 0.091 0.909 37 H 0.087 0.913 38 H 0.088 0.912 39 H 0.092 0.908 40 H 0.195 0.805 41 H 0.071 0.929 42 H 0.101 0.899 43 H 0.086 0.914 44 H 0.186 0.814 45 H 0.146 0.854 46 H 0.148 0.852 47 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 10.778 -26.628 -0.760 28.737 hybrid contribution -0.495 0.242 -1.305 1.417 sum 10.283 -26.386 -2.065 28.394 Atomic orbital electron populations 1.20833 0.87877 1.04174 1.03714 1.21439 0.97426 0.87537 0.93350 1.22312 0.93526 1.00042 0.99634 1.20366 0.93661 0.93426 1.00350 1.18040 0.87086 0.83328 0.77007 1.90593 1.13587 1.86599 1.49933 1.46003 1.11375 1.05919 1.73001 1.21580 0.94419 0.80972 1.02308 1.22779 0.98151 0.93201 1.00255 0.89149 1.23875 1.00963 1.01021 0.94934 1.20993 0.86987 0.92695 0.93215 0.91016 1.42511 1.27588 1.47564 1.19300 1.19106 1.03034 1.12980 1.02650 0.89015 1.24688 0.97542 0.98649 0.98148 1.69696 1.17078 1.32497 1.38524 0.86567 0.77935 0.78635 0.85471 1.21041 1.21620 1.20343 1.23467 0.99115 0.94583 1.01604 1.18661 0.95185 0.92000 1.01600 1.22056 0.93374 1.00490 0.95703 1.21103 1.00576 0.92255 1.00061 1.21000 0.93731 0.98917 0.97978 1.20766 0.94238 0.96037 1.00922 1.18849 0.88766 0.92985 0.98588 1.67644 1.08816 1.28851 1.11771 0.89788 0.90005 0.89992 0.83834 0.76160 0.90892 0.91315 0.91245 0.90850 0.80529 0.92941 0.89919 0.91351 0.81447 0.85353 0.85235 0.84624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.73 10.14 36.00 0.37 -0.36 16 2 C 0.15 1.52 6.78 -82.56 -0.56 0.96 16 3 C -0.13 -1.27 9.21 -38.95 -0.36 -1.63 16 4 C -0.07 -0.77 5.94 -104.34 -0.62 -1.39 16 5 C 0.56 6.86 7.75 -12.30 -0.10 6.76 16 6 O -0.53 -7.69 13.53 5.32 0.07 -7.62 16 7 N -0.71 -7.58 5.51 -61.23 -0.34 -7.92 16 8 C 0.13 1.47 5.51 -4.04 -0.02 1.45 16 9 C -0.13 -1.58 3.63 -89.81 -0.33 -1.91 16 10 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 11 C -0.17 -2.43 7.43 -25.92 -0.19 -2.62 16 12 C 0.17 3.04 4.56 -67.12 -0.31 2.73 16 13 H 0.07 1.31 8.10 -51.93 -0.42 0.89 16 14 N -0.73 -16.17 5.11 -52.64 -0.27 -16.44 16 15 C -0.25 -6.71 10.45 -15.06 -0.16 -6.87 16 16 H 0.09 2.67 8.06 -52.48 -0.42 2.25 16 17 C 0.01 0.16 5.50 -17.43 -0.10 0.07 16 18 N -0.93 -28.46 13.97 55.49 0.78 -27.68 16 19 Si 0.88 21.19 27.74 -169.99 -4.71 16.48 16 20 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 21 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 22 H -0.28 -6.23 6.52 56.52 0.37 -5.86 16 23 C -0.15 -2.06 7.39 -25.92 -0.19 -2.25 16 24 C -0.07 -0.87 5.76 -106.52 -0.61 -1.49 16 25 C -0.10 -1.12 9.25 -39.60 -0.37 -1.49 16 26 C -0.12 -1.09 9.96 -39.88 -0.40 -1.49 16 27 C -0.10 -0.77 9.94 -39.95 -0.40 -1.17 16 28 C -0.10 -0.96 9.98 -39.43 -0.39 -1.36 16 29 C 0.13 1.53 6.61 -84.88 -0.56 0.97 16 30 N -0.46 -5.34 10.19 -7.25 -0.07 -5.42 16 31 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 32 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.08 0.43 8.07 -51.93 -0.42 0.01 16 34 H 0.14 0.97 6.55 -52.49 -0.34 0.62 16 35 H 0.40 3.55 6.65 -40.82 -0.27 3.27 16 36 H 0.07 0.86 7.85 -51.93 -0.41 0.45 16 37 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 39 H 0.07 0.96 7.90 -51.93 -0.41 0.55 16 40 H 0.36 7.84 5.76 -40.82 -0.24 7.61 16 41 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 42 H 0.08 0.99 8.10 -51.93 -0.42 0.57 16 43 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 44 H 0.17 2.08 4.98 -52.49 -0.26 1.82 16 45 H 0.13 0.84 8.06 -52.48 -0.42 0.42 16 46 H 0.13 0.65 8.06 -52.48 -0.42 0.23 16 47 H 0.14 1.06 8.06 -52.49 -0.42 0.64 16 LS Contribution 385.91 15.07 5.82 5.82 Total: -1.00 -32.99 385.91 -10.61 -43.59 By element: Atomic # 1 Polarization: 16.85 SS G_CDS: -6.59 Total: 10.26 kcal Atomic # 6 Polarization: -5.78 SS G_CDS: -5.29 Total: -11.07 kcal Atomic # 7 Polarization: -57.55 SS G_CDS: 0.09 Total: -57.46 kcal Atomic # 8 Polarization: -7.69 SS G_CDS: 0.07 Total: -7.62 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -4.71 Total: 16.48 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -32.99 -10.61 -43.59 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086547109.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.269 kcal (2) G-P(sol) polarization free energy of solvation -32.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.593 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds