Wall clock time and date at job start Tue Mar 31 2020 22:16:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.39315 * 119.05991 * 2 1 4 4 C 1.38858 * 119.57813 * 179.72245 * 3 2 1 5 5 C 1.47902 * 121.11040 * 179.97438 * 4 3 2 6 6 O 1.21547 * 120.00195 * 174.14731 * 5 4 3 7 7 N 1.34778 * 120.00219 * 354.14922 * 5 4 3 8 8 C 1.46501 * 120.00365 * 180.02562 * 7 5 4 9 9 C 1.52997 * 109.46964 * 179.97438 * 8 7 5 10 10 H 1.08997 * 112.85121 * 316.18860 * 9 8 7 11 11 C 1.53781 * 113.61532 * 87.50414 * 9 8 7 12 12 C 1.53775 * 87.08363 * 139.97858 * 11 9 8 13 13 H 1.08999 * 113.61718 * 220.02046 * 12 11 9 14 14 N 1.46502 * 113.61876 * 89.11528 * 12 11 9 15 15 C 1.36931 * 120.00529 * 107.49986 * 14 12 11 16 16 H 1.08004 * 119.99511 * 0.02562 * 15 14 12 17 17 C 1.38811 * 120.00515 * 180.02562 * 15 14 12 18 18 N 1.31616 * 120.00012 * 180.02562 * 17 15 14 19 19 Si 1.86795 * 119.99639 * 0.02562 * 17 15 14 20 20 H 1.48501 * 109.47299 * 89.99989 * 19 17 15 21 21 H 1.48503 * 109.47075 * 209.99632 * 19 17 15 22 22 H 1.48500 * 109.47465 * 330.00103 * 19 17 15 23 23 C 1.53781 * 87.08185 * 334.56456 * 12 11 9 24 24 C 1.41823 * 117.77781 * 0.02562 * 4 3 2 25 25 C 1.40102 * 121.37199 * 180.02562 * 24 4 3 26 26 C 1.36249 * 119.64161 * 179.97438 * 25 24 4 27 27 C 1.39347 * 120.83856 * 0.02562 * 26 25 24 28 28 C 1.36065 * 121.04652 * 359.97438 * 27 26 25 29 29 C 1.40704 * 119.74471 * 0.02562 * 28 27 26 30 30 N 1.30976 * 119.06041 * 179.73090 * 2 1 3 31 31 H 1.09003 * 109.47126 * 90.00094 * 1 2 3 32 32 H 1.09004 * 109.46927 * 209.99847 * 1 2 3 33 33 H 1.08998 * 109.47314 * 330.00067 * 1 2 3 34 34 H 1.07996 * 120.21147 * 359.70106 * 3 2 1 35 35 H 0.97005 * 119.99717 * 359.97438 * 7 5 4 36 36 H 1.09005 * 109.46696 * 299.99519 * 8 7 5 37 37 H 1.08996 * 109.47329 * 59.99262 * 8 7 5 38 38 H 1.09003 * 113.61405 * 254.52500 * 11 9 8 39 39 H 1.08995 * 113.61757 * 25.42592 * 11 9 8 40 40 H 0.97003 * 119.99878 * 287.50661 * 14 12 11 41 41 H 0.97002 * 119.99702 * 180.02562 * 18 17 15 42 42 H 1.08994 * 113.61491 * 270.88758 * 23 12 11 43 43 H 1.09003 * 113.61508 * 139.97865 * 23 12 11 44 44 H 1.07998 * 120.17874 * 359.95472 * 25 24 4 45 45 H 1.08003 * 119.58241 * 179.97438 * 26 25 24 46 46 H 1.08004 * 119.47531 * 179.97438 * 27 26 25 47 47 H 1.08001 * 120.12538 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1837 1.2178 0.0000 4 6 3.5722 1.2303 0.0059 5 6 4.3249 2.5035 0.0055 6 8 5.5351 2.4941 0.1180 7 7 3.6689 3.6742 -0.1196 8 6 4.4145 4.9353 -0.1205 9 6 3.4394 6.1041 -0.2755 10 1 2.6791 5.9231 -1.0351 11 6 2.8704 6.6128 1.0596 12 6 3.0226 8.0341 0.4926 13 1 3.3807 8.7596 1.2231 14 7 1.8460 8.5009 -0.2449 15 6 1.0303 9.4560 0.3005 16 1 1.2547 9.8656 1.2744 17 6 -0.0848 9.8979 -0.3982 18 7 -0.8684 10.8163 0.1260 19 14 -0.4731 9.1890 -2.0822 20 1 -1.3488 7.9995 -1.9286 21 1 -1.1689 10.2133 -2.9019 22 1 0.7895 8.7906 -2.7548 23 6 4.1322 7.4704 -0.4106 24 6 4.2444 -0.0184 0.0111 25 6 5.6434 -0.0936 0.0177 26 6 6.2528 -1.3122 0.0231 27 6 5.5021 -2.4862 0.0216 28 6 4.1419 -2.4494 0.0153 29 6 3.4772 -1.2094 0.0095 30 7 2.1432 -1.1449 0.0054 31 1 -0.3633 0.0000 -1.0277 32 1 -0.3633 -0.8900 0.5138 33 1 -0.3634 0.8900 0.5138 34 1 1.6318 2.1461 -0.0049 35 1 2.7031 3.6817 -0.2097 36 1 4.9576 5.0369 0.8191 37 1 5.1208 4.9392 -0.9507 38 1 1.8347 6.3203 1.2326 39 1 3.5163 6.4122 1.9143 40 1 1.6446 8.1333 -1.1197 41 1 -1.6478 11.1248 -0.3621 42 1 5.1230 7.5042 0.0423 43 1 4.1151 7.8702 -1.4245 44 1 6.2357 0.8095 0.0181 45 1 7.3313 -1.3691 0.0277 46 1 6.0079 -3.4405 0.0256 47 1 3.5748 -3.3686 0.0146 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086547109.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:16:15 Heat of formation + Delta-G solvation = 34.798134 kcal Electronic energy + Delta-G solvation = -27986.989521 eV Core-core repulsion = 24134.730710 eV Total energy + Delta-G solvation = -3852.258811 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.25167 -40.75415 -39.86709 -38.40493 -36.19675 -35.11475 -34.51605 -33.00526 -32.67692 -31.19943 -29.11179 -28.57538 -26.45618 -25.90277 -25.19248 -24.06709 -23.50310 -22.94425 -21.72102 -20.15034 -19.56605 -19.04212 -18.55446 -18.47030 -17.06877 -16.72706 -16.61069 -16.42704 -16.10088 -15.89187 -15.70052 -15.60822 -15.14588 -14.98199 -14.64151 -14.57850 -14.27755 -14.08884 -14.05372 -13.91983 -13.35931 -13.13681 -13.09877 -13.00780 -12.68171 -12.60273 -12.37300 -12.33195 -12.24068 -11.88849 -11.65457 -11.61197 -11.57493 -11.35914 -10.97967 -10.86984 -10.38186 -10.22086 -9.74842 -9.29957 -9.28421 -8.01615 -5.35384 -1.00882 -0.28912 0.62849 1.38465 1.42476 1.50011 1.64093 1.89962 2.02779 2.49176 3.02187 3.11388 3.28212 3.31150 3.50914 3.53591 3.63288 3.72952 3.79804 3.82812 3.99071 4.12481 4.15720 4.27771 4.36203 4.36828 4.39218 4.42973 4.64075 4.69732 4.75513 4.78329 4.83405 4.94062 4.97542 4.98901 5.02882 5.09920 5.16012 5.24985 5.32239 5.34874 5.41923 5.47886 5.54206 5.55673 5.81811 5.86050 6.23592 6.32399 6.78149 6.98545 7.09040 7.85805 8.04414 9.19859 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.015968 B = 0.002330 C = 0.002103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1753.049273 B =12014.577475 C =13311.562444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.145 3.855 3 C -0.125 4.125 4 C -0.087 4.087 5 C 0.559 3.441 6 O -0.557 6.557 7 N -0.704 5.704 8 C 0.138 3.862 9 C -0.106 4.106 10 H 0.093 0.907 11 C -0.155 4.155 12 C 0.144 3.856 13 H 0.056 0.944 14 N -0.733 5.733 15 C -0.232 4.232 16 H 0.055 0.945 17 C -0.067 4.067 18 N -0.985 5.985 19 Si 0.956 3.044 20 H -0.274 1.274 21 H -0.300 1.300 22 H -0.250 1.250 23 C -0.133 4.133 24 C -0.092 4.092 25 C -0.124 4.124 26 C -0.115 4.115 27 C -0.090 4.090 28 C -0.110 4.110 29 C 0.106 3.894 30 N -0.478 5.478 31 H 0.095 0.905 32 H 0.081 0.919 33 H 0.099 0.901 34 H 0.171 0.829 35 H 0.413 0.587 36 H 0.073 0.927 37 H 0.072 0.928 38 H 0.055 0.945 39 H 0.091 0.909 40 H 0.367 0.633 41 H 0.257 0.743 42 H 0.107 0.893 43 H 0.066 0.934 44 H 0.154 0.846 45 H 0.153 0.847 46 H 0.165 0.835 47 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.224 -28.615 -2.266 30.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.007 4.007 3 C -0.146 4.146 4 C -0.098 4.098 5 C 0.347 3.653 6 O -0.437 6.437 7 N -0.355 5.355 8 C 0.015 3.985 9 C -0.125 4.125 10 H 0.111 0.889 11 C -0.195 4.195 12 C 0.035 3.965 13 H 0.074 0.926 14 N -0.375 5.375 15 C -0.363 4.363 16 H 0.073 0.927 17 C -0.258 4.258 18 N -0.635 5.635 19 Si 0.783 3.217 20 H -0.200 1.200 21 H -0.227 1.227 22 H -0.175 1.175 23 C -0.172 4.172 24 C -0.095 4.095 25 C -0.143 4.143 26 C -0.133 4.133 27 C -0.109 4.109 28 C -0.129 4.129 29 C -0.015 4.015 30 N -0.188 5.188 31 H 0.113 0.887 32 H 0.100 0.900 33 H 0.118 0.882 34 H 0.188 0.812 35 H 0.250 0.750 36 H 0.091 0.909 37 H 0.090 0.910 38 H 0.074 0.926 39 H 0.109 0.891 40 H 0.201 0.799 41 H 0.066 0.934 42 H 0.125 0.875 43 H 0.085 0.915 44 H 0.171 0.829 45 H 0.170 0.830 46 H 0.183 0.817 47 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 11.619 -29.237 -2.035 31.527 hybrid contribution -0.661 1.028 -0.777 1.448 sum 10.958 -28.209 -2.812 30.393 Atomic orbital electron populations 1.20925 0.85685 1.05049 1.04659 1.21989 0.98878 0.87277 0.92605 1.22606 0.92863 1.01134 0.97955 1.20389 0.94504 0.92919 1.01960 1.18168 0.86793 0.83843 0.76512 1.90584 1.14785 1.87014 1.51313 1.45896 1.11865 1.05295 1.72418 1.21439 0.93990 0.80584 1.02494 1.22599 0.97954 0.93128 0.98772 0.88861 1.23719 1.00835 0.98263 0.96697 1.21342 0.87013 0.93881 0.94274 0.92585 1.42421 1.28350 1.46909 1.19800 1.19053 1.03223 1.12853 1.01130 0.92660 1.25540 0.97767 0.99650 1.02830 1.69892 1.18045 1.34957 1.40619 0.85393 0.78648 0.77625 0.80000 1.19997 1.22696 1.17463 1.23363 0.98866 0.94324 1.00669 1.18878 0.95704 0.92594 1.02323 1.22024 0.93299 1.01022 0.97909 1.21445 1.01944 0.91750 0.98148 1.21367 0.93247 1.00024 0.96296 1.21070 0.95106 0.95875 1.00817 1.19194 0.89105 0.93719 0.99479 1.67694 1.08892 1.29810 1.12447 0.88658 0.90047 0.88209 0.81167 0.74980 0.90910 0.90971 0.92573 0.89087 0.79917 0.93380 0.87502 0.91491 0.82927 0.82976 0.81740 0.83226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.20 10.14 71.23 0.72 -0.47 16 2 C 0.15 2.65 6.78 42.94 0.29 2.94 16 3 C -0.13 -2.17 9.21 22.68 0.21 -1.96 16 4 C -0.09 -1.94 5.94 -19.68 -0.12 -2.06 16 5 C 0.56 13.20 7.75 86.80 0.67 13.88 16 6 O -0.56 -16.06 13.53 -3.86 -0.05 -16.11 16 7 N -0.70 -13.46 5.51 -465.92 -2.57 -16.03 16 8 C 0.14 2.76 5.51 86.38 0.48 3.23 16 9 C -0.11 -2.36 3.63 -10.27 -0.04 -2.40 16 10 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 11 C -0.15 -4.19 7.43 31.12 0.23 -3.96 16 12 C 0.14 4.91 4.56 45.52 0.21 5.12 16 13 H 0.06 2.06 8.10 -2.39 -0.02 2.04 16 14 N -0.73 -31.81 5.11 -320.46 -1.64 -33.45 16 15 C -0.23 -12.73 10.45 84.03 0.88 -11.86 16 16 H 0.06 3.37 8.06 -2.91 -0.02 3.35 16 17 C -0.07 -3.82 5.50 84.86 0.47 -3.35 16 18 N -0.98 -62.03 13.97 21.65 0.30 -61.73 16 19 Si 0.96 43.51 27.74 68.60 1.90 45.41 16 20 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 21 H -0.30 -14.07 7.11 99.48 0.71 -13.37 16 22 H -0.25 -10.12 6.52 99.48 0.65 -9.47 16 23 C -0.13 -3.33 7.39 31.12 0.23 -3.10 16 24 C -0.09 -2.24 5.76 -21.09 -0.12 -2.36 16 25 C -0.12 -2.84 9.25 22.26 0.21 -2.63 16 26 C -0.12 -1.91 9.96 22.07 0.22 -1.69 16 27 C -0.09 -1.26 9.94 22.03 0.22 -1.04 16 28 C -0.11 -1.96 9.98 22.37 0.22 -1.74 16 29 C 0.11 2.46 6.61 40.33 0.27 2.72 16 30 N -0.48 -10.74 10.19 -176.85 -1.80 -12.54 16 31 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 32 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 33 H 0.10 0.76 8.07 -2.39 -0.02 0.74 16 34 H 0.17 1.83 6.55 -2.91 -0.02 1.81 16 35 H 0.41 6.13 6.65 -92.70 -0.62 5.51 16 36 H 0.07 1.51 7.85 -2.38 -0.02 1.49 16 37 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 38 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 39 H 0.09 2.17 7.90 -2.39 -0.02 2.15 16 40 H 0.37 15.07 5.76 -92.71 -0.53 14.53 16 41 H 0.26 15.46 8.31 -92.71 -0.77 14.68 16 42 H 0.11 2.20 8.10 -2.39 -0.02 2.18 16 43 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 44 H 0.15 3.91 4.98 -2.91 -0.01 3.90 16 45 H 0.15 1.68 8.06 -2.91 -0.02 1.65 16 46 H 0.17 1.08 8.06 -2.91 -0.02 1.06 16 47 H 0.15 2.11 8.06 -2.91 -0.02 2.09 16 Total: -1.00 -74.57 385.91 1.19 -73.38 By element: Atomic # 1 Polarization: 31.98 SS G_CDS: -0.20 Total: 31.78 kcal Atomic # 6 Polarization: -15.97 SS G_CDS: 5.24 Total: -10.72 kcal Atomic # 7 Polarization: -118.03 SS G_CDS: -5.71 Total: -123.74 kcal Atomic # 8 Polarization: -16.06 SS G_CDS: -0.05 Total: -16.11 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 1.90 Total: 45.41 kcal Total: -74.57 1.19 -73.38 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086547109.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.177 kcal (2) G-P(sol) polarization free energy of solvation -74.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.379 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds