Wall clock time and date at job start Tue Mar 31 2020 22:39:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47057 * 2 1 4 4 H 1.09000 * 109.99916 * 305.73102 * 3 2 1 5 5 C 1.54340 * 109.99273 * 184.69906 * 3 2 1 6 6 H 1.09003 * 110.50790 * 336.97611 * 5 3 2 7 7 N 1.46498 * 111.00241 * 100.12584 * 5 3 2 8 8 C 1.34777 * 119.99913 * 200.23511 * 7 5 3 9 9 O 1.21611 * 119.99928 * 0.02562 * 8 7 5 10 10 C 1.47429 * 120.00102 * 180.02562 * 8 7 5 11 11 C 1.38745 * 120.33496 * 359.97438 * 10 8 7 12 12 C 1.38867 * 120.72697 * 179.97438 * 11 10 8 13 13 C 1.36350 * 121.05961 * 0.05152 * 12 11 10 14 14 C 1.40439 * 120.08338 * 359.97419 * 13 12 11 15 15 C 1.40813 * 121.26875 * 180.02562 * 14 13 12 16 16 C 1.36628 * 118.15545 * 179.97438 * 15 14 13 17 17 C 1.39239 * 119.90869 * 359.97438 * 16 15 14 18 18 N 1.31226 * 121.69836 * 0.03095 * 17 16 15 19 19 C 1.33360 * 121.34651 * 359.65218 * 18 17 16 20 20 C 1.55154 * 103.01909 * 218.66645 * 5 3 2 21 21 C 1.54915 * 101.58149 * 35.30574 * 20 5 3 22 22 N 1.47013 * 109.88115 * 66.83036 * 3 2 1 23 23 C 1.36939 * 125.65006 * 298.38988 * 22 3 2 24 24 H 1.07998 * 120.00219 * 325.76779 * 23 22 3 25 25 C 1.38811 * 119.99832 * 145.76486 * 23 22 3 26 26 N 1.31621 * 120.00421 * 339.05074 * 25 23 22 27 27 Si 1.86794 * 120.00074 * 159.04938 * 25 23 22 28 28 H 1.48496 * 109.47774 * 180.02562 * 27 25 23 29 29 H 1.48501 * 109.47174 * 300.00422 * 27 25 23 30 30 H 1.48505 * 109.47224 * 59.99674 * 27 25 23 31 31 H 1.09004 * 109.47139 * 171.17725 * 1 2 3 32 32 H 1.09001 * 109.47409 * 291.18103 * 1 2 3 33 33 H 1.09008 * 109.47223 * 51.18114 * 1 2 3 34 34 H 1.09008 * 109.46903 * 240.00295 * 2 1 3 35 35 H 1.08999 * 109.47326 * 120.00318 * 2 1 3 36 36 H 0.96999 * 120.00336 * 20.23600 * 7 5 3 37 37 H 1.08003 * 119.63794 * 359.97438 * 11 10 8 38 38 H 1.07995 * 119.47089 * 180.02562 * 12 11 10 39 39 H 1.08004 * 119.95976 * 179.97438 * 13 12 11 40 40 H 1.07998 * 120.92208 * 359.96680 * 15 14 13 41 41 H 1.07993 * 120.04738 * 180.02562 * 16 15 14 42 42 H 1.07999 * 119.15088 * 180.02562 * 17 16 15 43 43 H 1.08993 * 111.00570 * 277.22644 * 20 5 3 44 44 H 1.09004 * 111.03140 * 153.39091 * 20 5 3 45 45 H 1.09002 * 110.36505 * 204.14984 * 21 20 5 46 46 H 1.09001 * 110.46109 * 81.87990 * 21 20 5 47 47 H 0.97003 * 119.99485 * 353.68314 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6003 1.9933 -0.8315 5 6 3.5787 1.4582 -0.1188 6 1 3.9978 0.5119 0.2234 7 7 3.9963 1.7406 -1.4943 8 6 5.2358 1.4061 -1.9045 9 8 6.0074 0.8694 -1.1328 10 6 5.6562 1.6908 -3.2885 11 6 4.7814 2.3024 -4.1749 12 6 5.1690 2.5749 -5.4802 13 6 6.4156 2.2492 -5.9263 14 6 7.3326 1.6284 -5.0625 15 6 8.6264 1.2818 -5.4968 16 6 9.4670 0.6807 -4.6030 17 6 9.0339 0.4285 -3.3039 18 7 7.8269 0.7534 -2.9042 19 6 6.9607 1.3481 -3.7255 20 6 3.9906 2.6157 0.8286 21 6 2.9392 2.4820 1.9584 22 7 1.6938 2.0952 1.2710 23 6 0.4247 2.3040 1.7413 24 1 -0.3790 2.5148 1.0514 25 6 0.1713 2.2446 3.1048 26 7 1.0006 1.6038 3.9011 27 14 -1.3467 3.0740 3.8096 28 1 -1.3870 2.8663 5.2794 29 1 -1.2966 4.5291 3.5171 30 1 -2.5632 2.4868 3.1927 31 1 -0.3634 -1.0155 -0.1576 32 1 -0.3634 0.3713 0.9582 33 1 -0.3634 0.6442 -0.8007 34 1 1.8933 -0.5138 -0.8901 35 1 1.8934 -0.5139 0.8899 36 1 3.3807 2.1684 -2.1099 37 1 3.7879 2.5696 -3.8460 38 1 4.4718 3.0520 -6.1529 39 1 6.6983 2.4689 -6.9453 40 1 8.9455 1.4853 -6.5083 41 1 10.4662 0.4023 -4.9034 42 1 9.7086 -0.0469 -2.6074 43 1 3.9053 3.5799 0.3275 44 1 4.9993 2.4659 1.2138 45 1 2.8095 3.4354 2.4706 46 1 3.2374 1.7092 2.6669 47 1 1.7378 1.0964 3.5266 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087644460.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:39:13 Heat of formation + Delta-G solvation = 45.954862 kcal Electronic energy + Delta-G solvation = -29146.901506 eV Core-core repulsion = 25295.126487 eV Total energy + Delta-G solvation = -3851.775019 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.19285 -39.47450 -37.80255 -37.11178 -34.13259 -33.67164 -32.49672 -31.99031 -30.80222 -30.40593 -28.48464 -26.84375 -24.95764 -24.39843 -23.72293 -23.25799 -21.74617 -20.64669 -20.21048 -19.49833 -18.51569 -17.83902 -17.26867 -17.07083 -16.19791 -15.88908 -15.03252 -15.00988 -14.60034 -14.39062 -14.16764 -14.02219 -13.85989 -13.63036 -13.29556 -13.24786 -13.02719 -12.85080 -12.41647 -12.33763 -12.10877 -11.95871 -11.68981 -11.51891 -11.02712 -10.89632 -10.74542 -10.72402 -10.43200 -10.18867 -10.10164 -10.02535 -9.91212 -9.80903 -9.36634 -9.22263 -9.11020 -8.70262 -8.48460 -8.37580 -6.82356 -5.98955 -3.29730 -0.11480 0.52279 1.50412 2.50483 3.26467 3.27713 3.48667 3.52253 3.70009 3.96955 4.03137 4.25790 4.40891 4.50200 4.57720 4.58817 4.70943 4.80572 4.97642 5.10854 5.21145 5.36190 5.38777 5.45628 5.49483 5.56659 5.61257 5.72036 5.78049 5.86452 5.98898 6.00119 6.03671 6.14612 6.15960 6.22608 6.36846 6.47612 6.48787 6.58345 6.63329 6.73943 6.87033 6.97676 7.11797 7.17533 7.39359 7.71944 7.83968 7.97403 8.49916 8.54350 9.04218 9.80316 10.43181 11.24005 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.023092 B = 0.002538 C = 0.002437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1212.262405 B =11031.354696 C =11485.673859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.121 4.121 3 C 0.156 3.844 4 H 0.035 0.965 5 C 0.138 3.862 6 H 0.092 0.908 7 N -0.716 5.716 8 C 0.550 3.450 9 O -0.499 6.499 10 C -0.102 4.102 11 C -0.065 4.065 12 C -0.124 4.124 13 C -0.075 4.075 14 C -0.112 4.112 15 C -0.060 4.060 16 C -0.175 4.175 17 C 0.130 3.870 18 N -0.435 5.435 19 C 0.161 3.839 20 C -0.143 4.143 21 C 0.141 3.859 22 N -0.588 5.588 23 C -0.324 4.324 24 H 0.056 0.944 25 C -0.021 4.021 26 N -0.912 5.912 27 Si 1.067 2.933 28 H -0.286 1.286 29 H -0.293 1.293 30 H -0.292 1.292 31 H 0.028 0.972 32 H 0.091 0.909 33 H 0.037 0.963 34 H 0.037 0.963 35 H 0.056 0.944 36 H 0.394 0.606 37 H 0.136 0.864 38 H 0.135 0.865 39 H 0.133 0.867 40 H 0.139 0.861 41 H 0.138 0.862 42 H 0.160 0.840 43 H 0.064 0.936 44 H 0.065 0.935 45 H 0.047 0.953 46 H 0.031 0.969 47 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.054 0.833 -22.408 25.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.161 4.161 3 C 0.049 3.951 4 H 0.052 0.948 5 C 0.034 3.966 6 H 0.110 0.890 7 N -0.368 5.368 8 C 0.335 3.665 9 O -0.373 6.373 10 C -0.105 4.105 11 C -0.085 4.085 12 C -0.142 4.142 13 C -0.094 4.094 14 C -0.114 4.114 15 C -0.086 4.086 16 C -0.195 4.195 17 C -0.042 4.042 18 N -0.141 5.141 19 C 0.038 3.962 20 C -0.183 4.183 21 C 0.015 3.985 22 N -0.315 5.315 23 C -0.452 4.452 24 H 0.074 0.926 25 C -0.225 4.225 26 N -0.550 5.550 27 Si 0.897 3.103 28 H -0.211 1.211 29 H -0.220 1.220 30 H -0.219 1.219 31 H 0.047 0.953 32 H 0.110 0.890 33 H 0.056 0.944 34 H 0.056 0.944 35 H 0.075 0.925 36 H 0.229 0.771 37 H 0.154 0.846 38 H 0.153 0.847 39 H 0.151 0.849 40 H 0.157 0.843 41 H 0.155 0.845 42 H 0.177 0.823 43 H 0.082 0.918 44 H 0.084 0.916 45 H 0.066 0.934 46 H 0.049 0.951 47 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 12.341 0.674 -19.487 23.075 hybrid contribution 0.798 -0.040 -2.762 2.875 sum 13.139 0.635 -22.248 25.846 Atomic orbital electron populations 1.21848 0.95658 0.98684 1.04160 1.21862 0.97006 0.97575 0.99642 1.21227 0.89693 0.92341 0.91874 0.94766 1.22059 0.95701 0.99033 0.79838 0.88985 1.45993 1.14289 1.62505 1.14026 1.17886 0.82202 0.79768 0.86629 1.90852 1.51595 1.40410 1.54449 1.20035 0.93139 1.02352 0.95022 1.21510 0.99124 0.94725 0.93191 1.20850 0.96803 1.00733 0.95786 1.21148 0.93124 0.96012 0.99135 1.18841 0.95780 1.02014 0.94738 1.21449 0.91943 0.95263 0.99984 1.21972 1.01356 1.00978 0.95216 1.23215 0.92610 0.94296 0.94115 1.68360 1.02241 1.08692 1.34843 1.18641 0.93116 0.95333 0.89142 1.23172 0.99371 0.97778 0.97958 1.21592 0.85533 0.98393 0.92943 1.44431 1.01852 1.65740 1.19429 1.19511 0.84901 1.47691 0.93126 0.92588 1.25993 1.03841 0.98851 0.93803 1.70750 1.17595 1.28578 1.38126 0.83496 0.74730 0.75871 0.76228 1.21106 1.22025 1.21886 0.95312 0.89037 0.94398 0.94404 0.92532 0.77133 0.84624 0.84724 0.84892 0.84305 0.84456 0.82271 0.91769 0.91581 0.93418 0.95143 0.91728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.93 9.15 37.16 0.34 -2.59 16 2 C -0.12 -2.43 5.45 -26.73 -0.15 -2.57 16 3 C 0.16 3.17 2.99 -66.95 -0.20 2.97 16 4 H 0.03 0.68 7.69 -51.93 -0.40 0.28 16 5 C 0.14 2.59 2.76 -66.09 -0.18 2.40 16 6 H 0.09 1.89 7.39 -51.93 -0.38 1.51 16 7 N -0.72 -11.15 5.16 -53.09 -0.27 -11.42 16 8 C 0.55 9.24 7.76 -12.52 -0.10 9.15 16 9 O -0.50 -10.27 14.91 5.27 0.08 -10.19 16 10 C -0.10 -1.40 5.91 -104.61 -0.62 -2.02 16 11 C -0.06 -0.65 9.52 -39.16 -0.37 -1.02 16 12 C -0.12 -0.96 9.93 -40.03 -0.40 -1.36 16 13 C -0.08 -0.59 9.75 -39.43 -0.38 -0.97 16 14 C -0.11 -1.15 5.74 -106.82 -0.61 -1.77 16 15 C -0.06 -0.47 9.90 -39.19 -0.39 -0.86 16 16 C -0.18 -1.37 10.03 -39.79 -0.40 -1.77 16 17 C 0.13 1.41 11.15 -17.44 -0.19 1.21 16 18 N -0.43 -6.57 8.44 -10.76 -0.09 -6.66 16 19 C 0.16 2.24 6.61 -84.58 -0.56 1.68 16 20 C -0.14 -2.80 6.77 -24.58 -0.17 -2.97 16 21 C 0.14 3.29 5.81 -2.53 -0.01 3.28 16 22 N -0.59 -14.29 2.82 -162.57 -0.46 -14.75 16 23 C -0.32 -8.61 7.01 -15.06 -0.11 -8.72 16 24 H 0.06 1.50 7.66 -52.49 -0.40 1.10 16 25 C -0.02 -0.58 5.23 -17.43 -0.09 -0.67 16 26 N -0.91 -27.05 13.14 55.49 0.73 -26.32 16 27 Si 1.07 24.87 29.97 -169.99 -5.09 19.78 16 28 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 29 H -0.29 -6.62 7.11 56.52 0.40 -6.21 16 30 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 31 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.09 2.16 5.69 -51.93 -0.30 1.86 16 33 H 0.04 0.71 8.12 -51.92 -0.42 0.28 16 34 H 0.04 0.68 8.14 -51.92 -0.42 0.25 16 35 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 36 H 0.39 5.02 6.35 -40.82 -0.26 4.76 16 37 H 0.14 1.07 6.37 -52.48 -0.33 0.74 16 38 H 0.13 0.65 8.06 -52.49 -0.42 0.23 16 39 H 0.13 0.61 8.06 -52.48 -0.42 0.18 16 40 H 0.14 0.61 8.06 -52.49 -0.42 0.19 16 41 H 0.14 0.62 8.06 -52.49 -0.42 0.19 16 42 H 0.16 1.31 8.06 -52.49 -0.42 0.89 16 43 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 44 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 45 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16 46 H 0.03 0.77 6.68 -51.93 -0.35 0.43 16 47 H 0.27 8.14 6.19 -40.82 -0.25 7.88 16 LS Contribution 378.48 15.07 5.70 5.70 Total: -1.00 -34.56 378.48 -10.54 -45.10 By element: Atomic # 1 Polarization: 11.92 SS G_CDS: -6.54 Total: 5.38 kcal Atomic # 6 Polarization: -2.03 SS G_CDS: -4.59 Total: -6.61 kcal Atomic # 7 Polarization: -59.06 SS G_CDS: -0.09 Total: -59.15 kcal Atomic # 8 Polarization: -10.27 SS G_CDS: 0.08 Total: -10.19 kcal Atomic # 14 Polarization: 24.87 SS G_CDS: -5.09 Total: 19.78 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -34.56 -10.54 -45.10 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087644460.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.055 kcal (2) G-P(sol) polarization free energy of solvation -34.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.100 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds