Wall clock time and date at job start Tue Mar 31 2020 22:39:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47386 * 2 1 4 4 H 1.09004 * 109.99685 * 304.61440 * 3 2 1 5 5 C 1.54331 * 109.99185 * 183.57689 * 3 2 1 6 6 H 1.09003 * 110.51677 * 336.97589 * 5 3 2 7 7 N 1.46503 * 110.84945 * 100.19543 * 5 3 2 8 8 C 1.34781 * 119.99864 * 200.14054 * 7 5 3 9 9 O 1.21541 * 120.00138 * 0.02562 * 8 7 5 10 10 C 1.47907 * 119.99709 * 180.02562 * 8 7 5 11 11 C 1.38886 * 121.11232 * 5.97246 * 10 8 7 12 12 C 1.39271 * 119.57824 * 179.68347 * 11 10 8 13 13 N 1.30996 * 121.88299 * 0.66426 * 12 11 10 14 14 C 1.33540 * 121.82588 * 359.64021 * 13 12 11 15 15 C 1.40715 * 120.96547 * 180.02562 * 14 13 12 16 16 C 1.36056 * 119.73670 * 179.97438 * 15 14 13 17 17 C 1.39354 * 121.05991 * 0.04678 * 16 15 14 18 18 C 1.36253 * 120.83731 * 359.97140 * 17 16 15 19 19 C 1.40110 * 119.64034 * 0.02562 * 18 17 16 20 20 C 1.55157 * 103.02189 * 218.66351 * 5 3 2 21 21 C 1.54911 * 101.57929 * 35.30762 * 20 5 3 22 22 N 1.47016 * 109.88311 * 65.70632 * 3 2 1 23 23 C 1.36939 * 125.64855 * 298.40204 * 22 3 2 24 24 H 1.07994 * 120.00023 * 335.72040 * 23 22 3 25 25 C 1.38817 * 119.99754 * 155.73279 * 23 22 3 26 26 N 1.31618 * 119.99872 * 332.65194 * 25 23 22 27 27 Si 1.86800 * 119.99766 * 152.65798 * 25 23 22 28 28 H 1.48500 * 109.47140 * 89.99784 * 27 25 23 29 29 H 1.48498 * 109.47334 * 329.99246 * 27 25 23 30 30 H 1.48504 * 109.46914 * 209.99503 * 27 25 23 31 31 H 1.08998 * 109.47229 * 171.33217 * 1 2 3 32 32 H 1.09000 * 109.47416 * 291.32938 * 1 2 3 33 33 H 1.09005 * 109.47081 * 51.33295 * 1 2 3 34 34 H 1.09005 * 109.47029 * 239.99876 * 2 1 3 35 35 H 1.09000 * 109.47398 * 120.00168 * 2 1 3 36 36 H 0.97001 * 120.00150 * 20.15024 * 7 5 3 37 37 H 1.08004 * 120.21251 * 0.02562 * 11 10 8 38 38 H 1.08003 * 119.06465 * 180.32771 * 12 11 10 39 39 H 1.07996 * 120.13142 * 0.02562 * 15 14 13 40 40 H 1.08006 * 119.47337 * 180.02562 * 16 15 14 41 41 H 1.07992 * 119.58403 * 179.97438 * 17 16 15 42 42 H 1.07995 * 120.17658 * 180.02562 * 18 17 16 43 43 H 1.08997 * 111.00209 * 277.23890 * 20 5 3 44 44 H 1.08993 * 111.04113 * 153.39482 * 20 5 3 45 45 H 1.09002 * 110.36788 * 204.15849 * 21 20 5 46 46 H 1.08998 * 110.36703 * 81.82847 * 21 20 5 47 47 H 0.97000 * 120.00530 * 354.73986 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6157 1.9879 -0.8430 5 6 3.5806 1.4574 -0.0905 6 1 3.9934 0.5134 0.2656 7 7 4.0198 1.7327 -1.4607 8 6 5.2665 1.3983 -1.8488 9 8 6.0261 0.8678 -1.0622 10 6 5.7100 1.6768 -3.2321 11 6 4.9079 2.3905 -4.1130 12 6 5.3601 2.6403 -5.4063 13 7 6.5230 2.2092 -5.8280 14 6 7.3439 1.5117 -5.0387 15 6 8.5896 1.0579 -5.5103 16 6 9.4066 0.3497 -4.6845 17 6 9.0304 0.0631 -3.3736 18 6 7.8318 0.4859 -2.8827 19 6 6.9653 1.2177 -3.7053 20 6 3.9752 2.6212 0.8568 21 6 2.9032 2.4949 1.9678 22 7 1.6705 2.1035 1.2601 23 6 0.3930 2.3152 1.7055 24 1 -0.4240 2.3612 1.0007 25 6 0.1481 2.4709 3.0630 26 7 0.9503 1.9127 3.9447 27 14 -1.3198 3.4726 3.6384 28 1 -2.5007 2.5835 3.7804 29 1 -1.6160 4.5338 2.6427 30 1 -1.0097 4.0969 4.9497 31 1 -0.3633 -1.0159 -0.1549 32 1 -0.3634 0.3738 0.9573 33 1 -0.3633 0.6421 -0.8024 34 1 1.8933 -0.5139 -0.8900 35 1 1.8933 -0.5138 0.8899 36 1 3.4135 2.1558 -2.0886 37 1 3.9419 2.7544 -3.7953 38 1 4.7318 3.2007 -6.0828 39 1 8.8962 1.2716 -6.5236 40 1 10.3620 0.0038 -5.0507 41 1 9.6974 -0.5012 -2.7388 42 1 7.5512 0.2581 -1.8650 43 1 3.8991 3.5820 0.3479 44 1 4.9765 2.4740 1.2615 45 1 2.7640 3.4516 2.4712 46 1 3.1892 1.7258 2.6853 47 1 1.6670 1.3303 3.6480 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087645961.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:39:16 Heat of formation + Delta-G solvation = 45.943501 kcal Electronic energy + Delta-G solvation = -29141.219667 eV Core-core repulsion = 25289.444155 eV Total energy + Delta-G solvation = -3851.775512 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.33794 -39.67817 -37.97655 -37.35034 -34.48826 -33.68299 -32.65645 -32.02229 -30.80572 -30.24752 -28.66904 -27.08397 -25.36835 -24.32831 -23.81976 -22.93659 -21.86633 -21.04433 -20.44375 -19.65248 -18.39546 -17.77454 -17.53908 -17.38628 -16.26989 -15.70009 -15.24732 -15.02214 -14.97322 -14.47520 -14.34735 -14.17700 -14.06683 -13.67389 -13.44035 -13.38649 -13.10673 -12.95415 -12.48125 -12.22955 -12.05194 -11.88292 -11.74922 -11.61205 -11.16483 -11.01627 -10.80439 -10.72561 -10.57466 -10.45101 -10.25600 -10.18368 -10.08804 -9.90149 -9.50199 -9.45551 -9.08218 -8.96213 -8.49514 -8.42233 -6.96965 -6.12998 -3.24317 -0.16207 0.51248 1.48898 2.54749 2.93537 2.97308 3.46026 3.50712 3.65311 3.87959 3.95579 4.27789 4.35516 4.45235 4.53929 4.57914 4.82770 4.92587 5.02642 5.06955 5.23334 5.25421 5.27449 5.33778 5.36275 5.49628 5.60920 5.75147 5.81129 5.86152 5.89829 5.97768 6.05635 6.07855 6.17648 6.23657 6.26891 6.35602 6.42347 6.50858 6.57588 6.62880 6.70014 6.88391 6.96765 7.03109 7.27144 7.40517 7.55505 7.80539 8.07320 8.44291 8.96167 9.74647 10.31997 11.17096 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.022589 B = 0.002524 C = 0.002442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1239.266876 B =11088.697426 C =11464.999974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.123 4.123 3 C 0.157 3.843 4 H 0.037 0.963 5 C 0.134 3.866 6 H 0.096 0.904 7 N -0.702 5.702 8 C 0.559 3.441 9 O -0.526 6.526 10 C -0.065 4.065 11 C -0.140 4.140 12 C 0.126 3.874 13 N -0.460 5.460 14 C 0.123 3.877 15 C -0.101 4.101 16 C -0.097 4.097 17 C -0.120 4.120 18 C -0.099 4.099 19 C -0.066 4.066 20 C -0.144 4.144 21 C 0.144 3.856 22 N -0.589 5.589 23 C -0.329 4.329 24 H 0.065 0.935 25 C -0.023 4.023 26 N -0.911 5.911 27 Si 1.064 2.936 28 H -0.294 1.294 29 H -0.292 1.292 30 H -0.286 1.286 31 H 0.029 0.971 32 H 0.092 0.908 33 H 0.038 0.962 34 H 0.038 0.962 35 H 0.056 0.944 36 H 0.399 0.601 37 H 0.144 0.856 38 H 0.166 0.834 39 H 0.136 0.864 40 H 0.130 0.870 41 H 0.129 0.871 42 H 0.170 0.830 43 H 0.066 0.934 44 H 0.067 0.933 45 H 0.052 0.948 46 H 0.030 0.970 47 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.914 -0.999 -18.019 21.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.163 4.163 3 C 0.050 3.950 4 H 0.054 0.946 5 C 0.030 3.970 6 H 0.114 0.886 7 N -0.352 5.352 8 C 0.345 3.655 9 O -0.404 6.404 10 C -0.077 4.077 11 C -0.161 4.161 12 C -0.046 4.046 13 N -0.169 5.169 14 C 0.002 3.998 15 C -0.119 4.119 16 C -0.117 4.117 17 C -0.138 4.138 18 C -0.117 4.117 19 C -0.069 4.069 20 C -0.183 4.183 21 C 0.018 3.982 22 N -0.315 5.315 23 C -0.457 4.457 24 H 0.083 0.917 25 C -0.226 4.226 26 N -0.550 5.550 27 Si 0.894 3.106 28 H -0.222 1.222 29 H -0.219 1.219 30 H -0.212 1.212 31 H 0.048 0.952 32 H 0.110 0.890 33 H 0.058 0.942 34 H 0.057 0.943 35 H 0.075 0.925 36 H 0.235 0.765 37 H 0.161 0.839 38 H 0.184 0.816 39 H 0.154 0.846 40 H 0.147 0.853 41 H 0.147 0.853 42 H 0.187 0.813 43 H 0.085 0.915 44 H 0.086 0.914 45 H 0.070 0.930 46 H 0.048 0.952 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 11.913 -0.627 -16.887 20.675 hybrid contribution 0.109 -0.605 -0.940 1.123 sum 12.022 -1.232 -17.826 21.537 Atomic orbital electron populations 1.21889 0.95554 0.98906 1.04238 1.21895 0.97174 0.97513 0.99710 1.21182 0.89345 0.92434 0.92053 0.94554 1.22196 0.95872 0.99375 0.79577 0.88620 1.45990 1.13553 1.61216 1.14476 1.18021 0.82313 0.78848 0.86327 1.90593 1.52790 1.43019 1.54019 1.20435 0.94557 0.98363 0.94307 1.22475 1.00556 0.98255 0.94831 1.22912 0.92316 0.95711 0.93625 1.67806 1.04082 1.08732 1.36275 1.18894 0.94971 0.96500 0.89474 1.20769 0.92024 0.98572 1.00566 1.21004 0.99612 0.97192 0.93899 1.21124 0.97031 1.00021 0.95634 1.22110 0.92856 0.94506 1.02180 1.18689 0.94203 0.99261 0.94752 1.23197 0.99547 0.97625 0.97964 1.21540 0.85185 0.98748 0.92715 1.44532 1.01945 1.65357 1.19668 1.19596 0.83535 1.49696 0.92866 0.91746 1.25806 1.03983 1.00759 0.92067 1.70744 1.19734 1.28514 1.36043 0.83549 0.74960 0.76340 0.75745 1.22169 1.21888 1.21207 0.95162 0.88964 0.94250 0.94301 0.92500 0.76497 0.83860 0.81646 0.84640 0.85253 0.85315 0.81302 0.91540 0.91401 0.92988 0.95235 0.91844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.81 8.93 37.16 0.33 -2.47 16 2 C -0.12 -2.28 5.47 -26.73 -0.15 -2.43 16 3 C 0.16 2.96 3.00 -66.95 -0.20 2.76 16 4 H 0.04 0.67 7.69 -51.93 -0.40 0.27 16 5 C 0.13 2.25 2.76 -66.09 -0.18 2.06 16 6 H 0.10 1.74 7.40 -51.93 -0.38 1.35 16 7 N -0.70 -9.50 5.16 -52.94 -0.27 -9.77 16 8 C 0.56 7.97 7.75 -12.30 -0.10 7.87 16 9 O -0.53 -8.87 13.26 5.33 0.07 -8.80 16 10 C -0.07 -0.81 5.94 -104.34 -0.62 -1.43 16 11 C -0.14 -1.34 9.59 -38.96 -0.37 -1.71 16 12 C 0.13 1.17 11.14 -17.52 -0.20 0.97 16 13 N -0.46 -5.34 10.30 -11.00 -0.11 -5.46 16 14 C 0.12 1.50 6.61 -84.87 -0.56 0.94 16 15 C -0.10 -1.01 9.98 -39.43 -0.39 -1.41 16 16 C -0.10 -0.85 9.94 -39.95 -0.40 -1.25 16 17 C -0.12 -1.19 9.96 -39.88 -0.40 -1.59 16 18 C -0.10 -1.24 9.25 -39.59 -0.37 -1.60 16 19 C -0.07 -0.86 5.76 -106.52 -0.61 -1.47 16 20 C -0.14 -2.57 6.77 -24.58 -0.17 -2.73 16 21 C 0.14 3.18 5.53 -2.52 -0.01 3.16 16 22 N -0.59 -13.59 2.94 -162.56 -0.48 -14.07 16 23 C -0.33 -8.46 7.29 -15.06 -0.11 -8.57 16 24 H 0.06 1.66 7.14 -52.49 -0.37 1.28 16 25 C -0.02 -0.62 5.14 -17.43 -0.09 -0.71 16 26 N -0.91 -26.33 13.06 55.49 0.72 -25.61 16 27 Si 1.06 24.36 30.00 -169.99 -5.10 19.26 16 28 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 29 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16 30 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 31 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.09 2.06 5.53 -51.93 -0.29 1.78 16 33 H 0.04 0.69 8.13 -51.93 -0.42 0.27 16 34 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 36 H 0.40 4.39 6.49 -40.82 -0.27 4.12 16 37 H 0.14 0.97 6.55 -52.48 -0.34 0.62 16 38 H 0.17 0.94 8.06 -52.48 -0.42 0.52 16 39 H 0.14 1.11 8.06 -52.49 -0.42 0.69 16 40 H 0.13 0.74 8.06 -52.48 -0.42 0.32 16 41 H 0.13 0.98 8.06 -52.49 -0.42 0.56 16 42 H 0.17 2.36 4.99 -52.49 -0.26 2.10 16 43 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 44 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 45 H 0.05 1.24 8.14 -51.93 -0.42 0.82 16 46 H 0.03 0.71 6.78 -51.93 -0.35 0.36 16 47 H 0.27 7.86 6.26 -40.82 -0.26 7.61 16 LS Contribution 374.88 15.07 5.65 5.65 Total: -1.00 -31.22 374.88 -10.48 -41.70 By element: Atomic # 1 Polarization: 13.07 SS G_CDS: -6.37 Total: 6.71 kcal Atomic # 6 Polarization: -5.01 SS G_CDS: -4.59 Total: -9.60 kcal Atomic # 7 Polarization: -54.77 SS G_CDS: -0.14 Total: -54.91 kcal Atomic # 8 Polarization: -8.87 SS G_CDS: 0.07 Total: -8.80 kcal Atomic # 14 Polarization: 24.36 SS G_CDS: -5.10 Total: 19.26 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -31.22 -10.48 -41.70 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087645961.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.643 kcal (2) G-P(sol) polarization free energy of solvation -31.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.700 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds