Wall clock time and date at job start Tue Mar 31 2020 22:39:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.47470 * 2 1 4 4 H 1.09002 * 109.99221 * 314.69119 * 3 2 1 5 5 C 1.54334 * 109.99307 * 193.65269 * 3 2 1 6 6 H 1.09008 * 110.51214 * 336.97124 * 5 3 2 7 7 N 1.46493 * 111.00247 * 100.12293 * 5 3 2 8 8 C 1.34780 * 119.99822 * 200.23177 * 7 5 3 9 9 O 1.21581 * 120.00319 * 0.02562 * 8 7 5 10 10 C 1.47555 * 119.99780 * 179.97438 * 8 7 5 11 11 C 1.38696 * 120.38589 * 2.97179 * 10 8 7 12 12 C 1.38973 * 120.53529 * 179.69645 * 11 10 8 13 13 C 1.36206 * 121.23556 * 0.57681 * 12 11 10 14 14 C 1.40709 * 120.20355 * 359.72338 * 13 12 11 15 15 N 1.33680 * 120.94001 * 179.97438 * 14 13 12 16 16 C 1.31068 * 121.34590 * 179.97438 * 15 14 13 17 17 C 1.39332 * 121.70176 * 0.04493 * 16 15 14 18 18 C 1.36678 * 119.87613 * 359.97438 * 17 16 15 19 19 C 1.40478 * 118.16328 * 359.97438 * 18 17 16 20 20 C 1.55157 * 103.01922 * 218.66541 * 5 3 2 21 21 C 1.54910 * 101.58303 * 35.30479 * 20 5 3 22 22 N 1.47027 * 109.88209 * 75.78232 * 3 2 1 23 23 C 1.36937 * 125.64884 * 298.39869 * 22 3 2 24 24 H 1.07993 * 120.00001 * 41.88525 * 23 22 3 25 25 C 1.38814 * 119.99865 * 221.88962 * 23 22 3 26 26 N 1.31615 * 119.99797 * 196.22570 * 25 23 22 27 27 Si 1.86797 * 119.99777 * 16.22744 * 25 23 22 28 28 H 1.48502 * 109.46820 * 266.08694 * 27 25 23 29 29 H 1.48501 * 109.47323 * 26.08853 * 27 25 23 30 30 H 1.48498 * 109.46956 * 146.08994 * 27 25 23 31 31 H 1.08990 * 109.46930 * 170.24353 * 1 2 3 32 32 H 1.08999 * 109.46867 * 290.24809 * 1 2 3 33 33 H 1.08998 * 109.46522 * 50.24121 * 1 2 3 34 34 H 1.08998 * 109.47530 * 239.99505 * 2 1 3 35 35 H 1.09002 * 109.47081 * 119.99763 * 2 1 3 36 36 H 0.97001 * 120.00157 * 20.23755 * 7 5 3 37 37 H 1.08002 * 119.72991 * 359.97438 * 11 10 8 38 38 H 1.08001 * 119.37869 * 180.30618 * 12 11 10 39 39 H 1.07999 * 119.89696 * 179.70588 * 13 12 11 40 40 H 1.07999 * 119.14853 * 180.02562 * 16 15 14 41 41 H 1.08005 * 120.06519 * 179.97438 * 17 16 15 42 42 H 1.07998 * 120.92093 * 180.02562 * 18 17 16 43 43 H 1.09000 * 111.00561 * 277.23103 * 20 5 3 44 44 H 1.08994 * 111.03756 * 153.39422 * 20 5 3 45 45 H 1.09000 * 110.36627 * 204.14940 * 21 20 5 46 46 H 1.08998 * 110.45896 * 81.87740 * 21 20 5 47 47 H 0.97004 * 119.99710 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.4852 2.0340 -0.7282 5 6 3.5448 1.4701 -0.3423 6 1 4.0060 0.5090 -0.1148 7 7 3.7571 1.8250 -1.7477 8 6 4.9217 1.5169 -2.3520 9 8 5.7960 0.9440 -1.7309 10 6 5.1353 1.8739 -3.7677 11 6 4.1680 2.5807 -4.4666 12 6 4.3687 2.9240 -5.7982 13 6 5.5078 2.5691 -6.4552 14 6 6.5138 1.8463 -5.7880 15 7 7.6374 1.4900 -6.4186 16 6 8.5798 0.8170 -5.8047 17 6 8.4584 0.4395 -4.4690 18 6 7.3340 0.7724 -3.7669 19 6 6.3279 1.4946 -4.4299 20 6 4.0958 2.5785 0.5932 21 6 3.2210 2.3825 1.8565 22 7 1.8867 2.0271 1.3403 23 6 0.7012 2.2063 2.0019 24 1 -0.0532 1.4340 1.9769 25 6 0.4692 3.3808 2.7045 26 7 -0.5033 3.4369 3.5896 27 14 1.5371 4.8816 2.3936 28 1 2.6530 4.9064 3.3731 29 1 2.0886 4.8200 1.0162 30 1 0.7185 6.1113 2.5446 31 1 -0.3633 -1.0127 -0.1741 32 1 -0.3633 0.3557 0.9642 33 1 -0.3632 0.6573 -0.7900 34 1 1.8934 -0.5139 -0.8899 35 1 1.8934 -0.5138 0.8900 36 1 3.0595 2.2819 -2.2433 37 1 3.2534 2.8704 -3.9707 38 1 3.6051 3.4788 -6.3232 39 1 5.6391 2.8432 -7.4916 40 1 9.4734 0.5479 -6.3483 41 1 9.2514 -0.1151 -3.9892 42 1 7.2224 0.4888 -2.7308 43 1 3.9415 3.5671 0.1607 44 1 5.1493 2.4128 0.8179 45 1 3.1716 3.3075 2.4310 46 1 3.6169 1.5751 2.4725 47 1 -0.6657 4.2578 4.0804 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087678496.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:39:04 Heat of formation + Delta-G solvation = 54.751282 kcal Electronic energy + Delta-G solvation = -29259.419188 eV Core-core repulsion = 25408.025610 eV Total energy + Delta-G solvation = -3851.393578 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.30509 -39.76366 -38.09135 -37.15755 -34.41465 -33.53138 -32.66353 -32.26093 -30.82941 -30.62093 -29.17150 -27.19104 -25.09079 -24.41986 -23.70735 -23.22402 -22.08257 -21.07860 -20.49556 -19.64314 -18.44750 -17.75625 -17.09898 -16.98641 -16.47326 -16.29507 -15.41650 -15.14354 -15.04196 -14.52621 -14.35355 -14.23298 -14.06154 -13.99558 -13.42416 -13.03218 -12.89459 -12.71404 -12.47104 -12.41682 -12.27796 -12.05310 -11.90774 -11.64173 -11.54881 -11.26755 -10.97523 -10.84324 -10.70993 -10.57046 -10.40207 -10.24630 -10.10507 -9.91851 -9.41373 -9.38908 -9.10498 -8.98676 -8.57969 -8.52687 -6.76368 -6.04624 -3.56467 -0.13136 0.52925 1.51381 2.40026 3.02291 3.06051 3.27607 3.40582 3.45344 3.88424 3.97472 4.32550 4.41147 4.46153 4.52250 4.61230 4.79436 4.82887 4.90219 5.05401 5.08812 5.11201 5.17891 5.36632 5.47644 5.51374 5.55755 5.67766 5.75955 5.78306 5.85984 5.92068 5.93968 6.00166 6.07013 6.11358 6.25084 6.32170 6.36684 6.45248 6.50142 6.52204 6.58707 6.67579 6.78822 6.97431 7.01667 7.44650 7.61586 7.92280 8.11989 8.34666 8.81061 9.59203 10.19363 11.08891 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.018177 B = 0.002800 C = 0.002791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1540.006011 B = 9998.181174 C =10030.569995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.124 4.124 3 C 0.155 3.845 4 H 0.045 0.955 5 C 0.135 3.865 6 H 0.098 0.902 7 N -0.705 5.705 8 C 0.561 3.439 9 O -0.536 6.536 10 C -0.108 4.108 11 C -0.075 4.075 12 C -0.110 4.110 13 C -0.068 4.068 14 C 0.118 3.882 15 N -0.480 5.480 16 C 0.132 3.868 17 C -0.181 4.181 18 C -0.059 4.059 19 C -0.067 4.067 20 C -0.146 4.146 21 C 0.119 3.881 22 N -0.598 5.598 23 C -0.252 4.252 24 H 0.094 0.906 25 C 0.038 3.962 26 N -0.902 5.902 27 Si 0.886 3.114 28 H -0.286 1.286 29 H -0.268 1.268 30 H -0.302 1.302 31 H 0.034 0.966 32 H 0.084 0.916 33 H 0.044 0.956 34 H 0.044 0.956 35 H 0.062 0.938 36 H 0.400 0.600 37 H 0.135 0.865 38 H 0.138 0.862 39 H 0.139 0.861 40 H 0.159 0.841 41 H 0.138 0.862 42 H 0.181 0.819 43 H 0.068 0.932 44 H 0.071 0.929 45 H 0.046 0.954 46 H 0.034 0.966 47 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.056 -3.536 -18.992 23.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.164 4.164 3 C 0.048 3.952 4 H 0.062 0.938 5 C 0.030 3.970 6 H 0.116 0.884 7 N -0.355 5.355 8 C 0.349 3.651 9 O -0.415 6.415 10 C -0.112 4.112 11 C -0.094 4.094 12 C -0.130 4.130 13 C -0.087 4.087 14 C -0.003 4.003 15 N -0.188 5.188 16 C -0.041 4.041 17 C -0.201 4.201 18 C -0.084 4.084 19 C -0.070 4.070 20 C -0.185 4.185 21 C -0.005 4.005 22 N -0.325 5.325 23 C -0.380 4.380 24 H 0.111 0.889 25 C -0.163 4.163 26 N -0.543 5.543 27 Si 0.716 3.284 28 H -0.214 1.214 29 H -0.193 1.193 30 H -0.230 1.230 31 H 0.053 0.947 32 H 0.102 0.898 33 H 0.063 0.937 34 H 0.063 0.937 35 H 0.081 0.919 36 H 0.236 0.764 37 H 0.152 0.848 38 H 0.156 0.844 39 H 0.157 0.843 40 H 0.176 0.824 41 H 0.156 0.844 42 H 0.197 0.803 43 H 0.086 0.914 44 H 0.090 0.910 45 H 0.064 0.936 46 H 0.052 0.948 47 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 13.458 -3.534 -19.243 23.746 hybrid contribution 0.134 1.023 0.518 1.155 sum 13.592 -2.511 -18.725 23.274 Atomic orbital electron populations 1.21958 0.95635 0.99414 1.03991 1.21917 0.96798 0.97316 1.00324 1.21260 0.90467 0.93726 0.89740 0.93762 1.22153 0.97557 0.98873 0.78416 0.88368 1.45989 1.16778 1.59583 1.13183 1.18054 0.82391 0.78831 0.85854 1.90538 1.42315 1.42613 1.66047 1.19934 0.95260 1.02051 0.93985 1.21503 0.98051 0.95214 0.94630 1.20845 0.97832 1.00011 0.94297 1.20999 0.91817 0.95532 1.00381 1.18854 0.93411 0.97884 0.90196 1.68047 1.00937 1.12149 1.37654 1.23009 0.96751 0.92001 0.92318 1.22072 0.99637 1.02529 0.95857 1.22728 0.90957 0.91661 1.03064 1.18644 0.94837 0.99292 0.94184 1.23192 0.99504 0.98599 0.97211 1.21887 0.86354 0.98480 0.93814 1.44526 1.01713 1.73930 1.12294 1.18733 0.92821 0.99882 1.26553 0.88912 1.25606 0.95925 0.97390 0.97358 1.69792 1.32437 1.27743 1.24332 0.86735 0.79454 0.83146 0.79038 1.21366 1.19341 1.22997 0.94664 0.89765 0.93688 0.93719 0.91920 0.76423 0.84756 0.84405 0.84334 0.82408 0.84390 0.80283 0.91354 0.91025 0.93638 0.94765 0.92537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.65 9.50 37.16 0.35 -2.29 16 2 C -0.12 -2.10 5.38 -26.73 -0.14 -2.24 16 3 C 0.15 2.81 2.95 -66.94 -0.20 2.61 16 4 H 0.04 0.81 7.52 -51.93 -0.39 0.42 16 5 C 0.13 2.16 2.72 -66.09 -0.18 1.98 16 6 H 0.10 1.63 7.39 -51.92 -0.38 1.24 16 7 N -0.71 -9.41 5.16 -53.06 -0.27 -9.68 16 8 C 0.56 7.78 7.74 -12.46 -0.10 7.68 16 9 O -0.54 -8.62 13.11 5.29 0.07 -8.55 16 10 C -0.11 -1.31 5.90 -104.65 -0.62 -1.92 16 11 C -0.07 -0.70 9.53 -39.14 -0.37 -1.08 16 12 C -0.11 -0.89 9.92 -40.04 -0.40 -1.29 16 13 C -0.07 -0.65 9.96 -39.38 -0.39 -1.04 16 14 C 0.12 1.40 6.60 -84.88 -0.56 0.84 16 15 N -0.48 -5.60 10.34 -10.99 -0.11 -5.71 16 16 C 0.13 1.24 11.15 -17.47 -0.19 1.05 16 17 C -0.18 -1.74 10.03 -39.74 -0.40 -2.13 16 18 C -0.06 -0.72 9.30 -39.30 -0.37 -1.08 16 19 C -0.07 -0.84 5.76 -106.53 -0.61 -1.46 16 20 C -0.15 -2.54 6.77 -24.58 -0.17 -2.71 16 21 C 0.12 2.48 6.27 -2.53 -0.02 2.46 16 22 N -0.60 -13.34 2.55 -162.56 -0.41 -13.75 16 23 C -0.25 -6.62 9.70 -15.06 -0.15 -6.77 16 24 H 0.09 2.56 5.08 -52.49 -0.27 2.30 16 25 C 0.04 1.07 5.46 -17.43 -0.10 0.97 16 26 N -0.90 -26.63 13.97 55.49 0.78 -25.85 16 27 Si 0.89 21.71 25.02 -169.99 -4.25 17.46 16 28 H -0.29 -6.96 6.81 56.52 0.38 -6.57 16 29 H -0.27 -6.34 7.09 56.52 0.40 -5.94 16 30 H -0.30 -7.55 7.11 56.52 0.40 -7.15 16 31 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.08 1.72 4.92 -51.93 -0.26 1.47 16 33 H 0.04 0.74 7.99 -51.93 -0.41 0.33 16 34 H 0.04 0.67 8.09 -51.93 -0.42 0.25 16 35 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 36 H 0.40 4.45 6.37 -40.82 -0.26 4.19 16 37 H 0.13 0.97 6.39 -52.49 -0.34 0.63 16 38 H 0.14 0.71 8.06 -52.49 -0.42 0.29 16 39 H 0.14 1.05 8.06 -52.49 -0.42 0.63 16 40 H 0.16 0.94 8.06 -52.49 -0.42 0.52 16 41 H 0.14 0.93 8.06 -52.48 -0.42 0.51 16 42 H 0.18 2.38 4.94 -52.52 -0.26 2.12 16 43 H 0.07 1.22 8.12 -51.93 -0.42 0.80 16 44 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 45 H 0.05 1.03 3.84 -51.93 -0.20 0.83 16 46 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 47 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 369.56 15.07 5.57 5.57 Total: -1.00 -31.79 369.56 -9.39 -41.17 By element: Atomic # 1 Polarization: 11.92 SS G_CDS: -6.14 Total: 5.78 kcal Atomic # 6 Polarization: -1.83 SS G_CDS: -4.60 Total: -6.43 kcal Atomic # 7 Polarization: -54.97 SS G_CDS: -0.03 Total: -55.00 kcal Atomic # 8 Polarization: -8.62 SS G_CDS: 0.07 Total: -8.55 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -4.25 Total: 17.46 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -31.79 -9.39 -41.17 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087678496.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.926 kcal (2) G-P(sol) polarization free energy of solvation -31.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.175 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds