Wall clock time and date at job start Tue Mar 31 2020 22:38:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47363 * 2 1 4 4 H 1.09000 * 109.86823 * 55.81410 * 3 2 1 5 5 C 1.54319 * 109.88441 * 294.78968 * 3 2 1 6 6 H 1.08998 * 110.71803 * 336.78230 * 5 3 2 7 7 N 1.46506 * 110.71804 * 99.87093 * 5 3 2 8 8 C 1.34768 * 120.00023 * 205.00386 * 7 5 3 9 9 O 1.21564 * 120.00165 * 359.97438 * 8 7 5 10 10 C 1.47771 * 120.00167 * 180.02562 * 8 7 5 11 11 C 1.40638 * 119.80211 * 359.97438 * 10 8 7 12 12 C 1.35701 * 120.92034 * 179.97438 * 11 10 8 13 13 C 1.40756 * 120.11443 * 0.02562 * 12 11 10 14 14 N 1.33650 * 120.83585 * 180.27113 * 13 12 11 15 15 C 1.31117 * 121.39494 * 180.27664 * 14 13 12 16 16 C 1.39308 * 121.76916 * 359.43803 * 15 14 13 17 17 C 1.36578 * 119.90891 * 0.27922 * 16 15 14 18 18 C 1.40897 * 118.15738 * 0.02562 * 17 16 15 19 19 C 1.38549 * 119.80576 * 179.97438 * 10 8 7 20 20 C 1.55154 * 102.94628 * 218.23449 * 5 3 2 21 21 C 1.54916 * 101.58033 * 35.50152 * 20 5 3 22 22 N 1.47025 * 110.01147 * 176.90424 * 3 2 1 23 23 C 1.36939 * 125.64841 * 298.40066 * 22 3 2 24 24 H 1.07996 * 119.99829 * 345.36794 * 23 22 3 25 25 C 1.38818 * 119.99883 * 165.36823 * 23 22 3 26 26 N 1.31623 * 119.99741 * 359.97438 * 25 23 22 27 27 Si 1.86792 * 119.99946 * 179.97438 * 25 23 22 28 28 H 1.48504 * 109.47225 * 0.02562 * 27 25 23 29 29 H 1.48508 * 109.47036 * 119.99884 * 27 25 23 30 30 H 1.48499 * 109.47272 * 239.99853 * 27 25 23 31 31 H 1.08999 * 109.47055 * 65.57716 * 1 2 3 32 32 H 1.08998 * 109.47479 * 185.57789 * 1 2 3 33 33 H 1.08996 * 109.46693 * 305.58378 * 1 2 3 34 34 H 1.09002 * 109.46703 * 239.99995 * 2 1 3 35 35 H 1.09003 * 109.47308 * 120.00508 * 2 1 3 36 36 H 0.97003 * 119.99855 * 24.99750 * 7 5 3 37 37 H 1.07996 * 119.53635 * 359.95978 * 11 10 8 38 38 H 1.07996 * 119.93961 * 180.02562 * 12 11 10 39 39 H 1.08002 * 119.10965 * 179.71896 * 15 14 13 40 40 H 1.08001 * 120.04901 * 180.25546 * 16 15 14 41 41 H 1.07998 * 120.92915 * 180.02562 * 17 16 15 42 42 H 1.07995 * 120.29700 * 0.02562 * 19 10 8 43 43 H 1.08996 * 111.00681 * 153.57705 * 20 5 3 44 44 H 1.08998 * 111.00603 * 277.43242 * 20 5 3 45 45 H 1.08994 * 110.36591 * 204.15238 * 21 20 5 46 46 H 1.09004 * 110.45327 * 81.87369 * 21 20 5 47 47 H 0.97005 * 119.99685 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6205 1.9838 0.8480 5 6 1.6414 2.1402 -1.3175 6 1 1.4661 1.4067 -2.1045 7 7 0.4572 2.9802 -1.1214 8 6 -0.3464 3.2663 -2.1648 9 8 -0.0884 2.8277 -3.2688 10 6 -1.5405 4.1140 -1.9671 11 6 -1.8348 4.6197 -0.6882 12 6 -2.9250 5.4007 -0.4811 13 6 -3.7816 5.7162 -1.5526 14 7 -4.8562 6.4885 -1.3660 15 6 -5.6644 6.7849 -2.3550 16 6 -5.4400 6.3217 -3.6496 17 6 -4.3570 5.5320 -3.9121 18 6 -3.4943 5.2105 -2.8455 19 6 -2.3635 4.4060 -3.0428 20 6 2.8846 3.0107 -1.6398 21 6 4.0371 2.1042 -1.1399 22 7 3.5083 1.4570 0.0746 23 6 4.2602 0.9533 1.1023 24 1 3.7934 0.7148 2.0465 25 6 5.6225 0.7493 0.9304 26 7 6.1914 1.0395 -0.2205 27 14 6.6483 0.0629 2.3325 28 1 5.7774 -0.1790 3.5108 29 1 7.2733 -1.2159 1.9087 30 1 7.7097 1.0371 2.6925 31 1 -0.3633 0.4249 -0.9357 32 1 -0.3634 -1.0228 0.0999 33 1 -0.3632 0.5980 0.8358 34 1 1.8933 -0.5139 -0.8900 35 1 1.8934 -0.5139 0.8899 36 1 0.2515 3.3304 -0.2404 37 1 -1.1842 4.3829 0.1406 38 1 -3.1357 5.7809 0.5075 39 1 -6.5247 7.4085 -2.1617 40 1 -6.1216 6.5863 -4.4444 41 1 -4.1670 5.1642 -4.9096 42 1 -2.1362 4.0165 -4.0241 43 1 2.9672 3.1923 -2.7114 44 1 2.8582 3.9496 -1.0869 45 1 4.9143 2.7043 -0.8986 46 1 4.2857 1.3549 -1.8914 47 1 7.1433 0.8966 -0.3407 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087710400.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:38:46 Heat of formation + Delta-G solvation = 41.004747 kcal Electronic energy + Delta-G solvation = -28747.112730 eV Core-core repulsion = 24895.123058 eV Total energy + Delta-G solvation = -3851.989672 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.20193 -39.82098 -37.92977 -36.80243 -34.20900 -33.78917 -32.80071 -31.86777 -30.89651 -30.36667 -28.95534 -26.72834 -25.21782 -24.21860 -24.10730 -22.55232 -22.12498 -21.00230 -20.26419 -19.80130 -18.42730 -17.88742 -17.25601 -16.82144 -16.07679 -15.87972 -14.98899 -14.88661 -14.74261 -14.46205 -14.35764 -14.17988 -13.95630 -13.76827 -13.72118 -13.44881 -13.20784 -12.71968 -12.36080 -12.14431 -11.95756 -11.87991 -11.75088 -11.65650 -11.16290 -10.95339 -10.91900 -10.85782 -10.63638 -10.47462 -10.32754 -10.06763 -9.88735 -9.82659 -9.70634 -9.67687 -9.17378 -8.73514 -8.61737 -8.52856 -6.82741 -5.77405 -3.13847 -0.08213 0.33764 1.59256 2.20235 3.21491 3.23443 3.37370 3.43488 3.45489 3.82225 3.89336 4.23150 4.32668 4.44678 4.49307 4.58762 4.68813 4.79898 4.86704 5.10827 5.24933 5.34044 5.40769 5.49153 5.52720 5.55958 5.60124 5.68388 5.74080 5.78455 5.83870 5.92550 5.99064 6.04715 6.13516 6.21156 6.26420 6.39550 6.41332 6.45380 6.54114 6.65655 6.71631 6.93135 7.11878 7.49067 7.51947 7.58447 7.65909 7.77354 8.23656 8.30799 9.16080 9.77038 10.44734 11.34605 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.025717 B = 0.002267 C = 0.002234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1088.500434 B =12350.252956 C =12529.853642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.132 4.132 3 C 0.160 3.840 4 H 0.035 0.965 5 C 0.137 3.863 6 H 0.096 0.904 7 N -0.706 5.706 8 C 0.556 3.444 9 O -0.538 6.538 10 C -0.127 4.127 11 C -0.073 4.073 12 C -0.098 4.098 13 C 0.141 3.859 14 N -0.478 5.478 15 C 0.138 3.862 16 C -0.182 4.182 17 C -0.045 4.045 18 C -0.113 4.113 19 C -0.028 4.028 20 C -0.156 4.156 21 C 0.174 3.826 22 N -0.594 5.594 23 C -0.227 4.227 24 H 0.076 0.924 25 C -0.004 4.004 26 N -0.916 5.916 27 Si 0.910 3.090 28 H -0.279 1.279 29 H -0.290 1.290 30 H -0.291 1.291 31 H 0.047 0.953 32 H 0.044 0.956 33 H 0.046 0.954 34 H 0.058 0.942 35 H 0.064 0.936 36 H 0.397 0.603 37 H 0.136 0.864 38 H 0.141 0.859 39 H 0.160 0.840 40 H 0.139 0.861 41 H 0.142 0.858 42 H 0.146 0.854 43 H 0.063 0.937 44 H 0.061 0.939 45 H 0.074 0.926 46 H 0.028 0.972 47 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.700 10.089 -5.064 25.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.171 4.171 3 C 0.052 3.948 4 H 0.052 0.948 5 C 0.033 3.967 6 H 0.114 0.886 7 N -0.356 5.356 8 C 0.342 3.658 9 O -0.417 6.417 10 C -0.130 4.130 11 C -0.094 4.094 12 C -0.116 4.116 13 C 0.020 3.980 14 N -0.186 5.186 15 C -0.035 4.035 16 C -0.202 4.202 17 C -0.071 4.071 18 C -0.115 4.115 19 C -0.048 4.048 20 C -0.196 4.196 21 C 0.049 3.951 22 N -0.318 5.318 23 C -0.356 4.356 24 H 0.094 0.906 25 C -0.201 4.201 26 N -0.562 5.562 27 Si 0.740 3.260 28 H -0.204 1.204 29 H -0.217 1.217 30 H -0.218 1.218 31 H 0.067 0.933 32 H 0.063 0.937 33 H 0.065 0.935 34 H 0.077 0.923 35 H 0.083 0.917 36 H 0.233 0.767 37 H 0.153 0.847 38 H 0.159 0.841 39 H 0.177 0.823 40 H 0.157 0.843 41 H 0.160 0.840 42 H 0.164 0.836 43 H 0.081 0.919 44 H 0.080 0.920 45 H 0.092 0.908 46 H 0.047 0.953 47 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -22.306 9.979 -4.893 24.921 hybrid contribution 0.624 -0.552 0.256 0.871 sum -21.682 9.427 -4.638 24.093 Atomic orbital electron populations 1.21770 0.97251 1.00530 1.00908 1.22011 0.93556 0.99124 1.02444 1.21082 0.87132 0.93401 0.93150 0.94776 1.22167 0.83151 0.92451 0.98947 0.88567 1.46006 1.26602 1.51848 1.11159 1.18109 0.82458 0.80438 0.84788 1.90777 1.73519 1.53162 1.24195 1.20069 0.97206 1.01330 0.94378 1.21017 0.96691 0.95457 0.96197 1.20683 0.93709 0.98650 0.98598 1.19013 0.92933 0.94027 0.92049 1.68076 1.03540 1.12601 1.34379 1.23038 0.96826 0.95144 0.88465 1.21904 0.99296 1.00216 0.98791 1.21589 0.92601 0.94254 0.98694 1.18821 0.97278 1.00768 0.94681 1.21457 0.90894 0.93036 0.99414 1.23430 0.96699 0.99065 1.00421 1.21435 0.93074 0.92917 0.87702 1.44451 0.98351 1.68322 1.20716 1.18981 0.89854 1.35909 0.90818 0.90644 1.24921 0.97256 1.00931 0.96989 1.69941 1.10554 1.52867 1.22859 0.86082 0.80248 0.78484 0.81155 1.20437 1.21696 1.21750 0.93346 0.93665 0.93459 0.92341 0.91682 0.76735 0.84672 0.84088 0.82261 0.84293 0.83984 0.83632 0.91855 0.91980 0.90787 0.95347 0.93659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.16 9.57 37.16 0.36 -1.80 16 2 C -0.13 -2.41 5.42 -26.73 -0.14 -2.56 16 3 C 0.16 3.11 2.93 -66.95 -0.20 2.92 16 4 H 0.03 0.64 7.72 -51.93 -0.40 0.24 16 5 C 0.14 2.41 2.02 -66.10 -0.13 2.28 16 6 H 0.10 1.85 7.19 -51.93 -0.37 1.48 16 7 N -0.71 -10.00 4.85 -53.00 -0.26 -10.26 16 8 C 0.56 8.15 7.77 -12.37 -0.10 8.05 16 9 O -0.54 -9.71 15.95 5.31 0.08 -9.62 16 10 C -0.13 -1.51 5.87 -104.98 -0.62 -2.13 16 11 C -0.07 -0.73 9.44 -39.58 -0.37 -1.10 16 12 C -0.10 -0.97 9.95 -39.54 -0.39 -1.36 16 13 C 0.14 1.55 6.61 -84.77 -0.56 0.99 16 14 N -0.48 -5.00 10.33 -10.92 -0.11 -5.12 16 15 C 0.14 1.03 11.15 -17.46 -0.19 0.83 16 16 C -0.18 -1.15 10.03 -39.78 -0.40 -1.55 16 17 C -0.05 -0.35 9.89 -39.18 -0.39 -0.73 16 18 C -0.11 -1.16 5.74 -106.81 -0.61 -1.78 16 19 C -0.03 -0.31 9.35 -38.74 -0.36 -0.67 16 20 C -0.16 -3.00 6.77 -24.58 -0.17 -3.17 16 21 C 0.17 4.14 5.41 -2.53 -0.01 4.12 16 22 N -0.59 -14.41 3.13 -162.57 -0.51 -14.92 16 23 C -0.23 -6.06 9.76 -15.06 -0.15 -6.21 16 24 H 0.08 1.96 7.83 -52.49 -0.41 1.55 16 25 C 0.00 -0.11 5.47 -17.43 -0.10 -0.20 16 26 N -0.92 -26.35 10.58 55.49 0.59 -25.76 16 27 Si 0.91 21.64 29.55 -169.99 -5.02 16.62 16 28 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 29 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 30 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 31 H 0.05 0.72 7.40 -51.93 -0.38 0.33 16 32 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.06 1.15 8.07 -51.93 -0.42 0.73 16 35 H 0.06 1.28 7.91 -51.93 -0.41 0.87 16 36 H 0.40 4.66 6.35 -40.82 -0.26 4.40 16 37 H 0.14 1.06 6.35 -52.49 -0.33 0.72 16 38 H 0.14 1.17 8.06 -52.49 -0.42 0.75 16 39 H 0.16 0.67 8.06 -52.49 -0.42 0.25 16 40 H 0.14 0.45 8.06 -52.49 -0.42 0.02 16 41 H 0.14 0.74 8.06 -52.49 -0.42 0.32 16 42 H 0.15 1.54 7.62 -52.49 -0.40 1.15 16 43 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 44 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 45 H 0.07 1.95 6.93 -51.93 -0.36 1.59 16 46 H 0.03 0.74 8.06 -51.93 -0.42 0.32 16 47 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 LS Contribution 383.36 15.07 5.78 5.78 Total: -1.00 -32.52 383.36 -10.68 -43.19 By element: Atomic # 1 Polarization: 10.84 SS G_CDS: -6.69 Total: 4.16 kcal Atomic # 6 Polarization: 0.47 SS G_CDS: -4.54 Total: -4.07 kcal Atomic # 7 Polarization: -55.76 SS G_CDS: -0.29 Total: -56.06 kcal Atomic # 8 Polarization: -9.71 SS G_CDS: 0.08 Total: -9.62 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -32.52 -10.68 -43.19 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087710400.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.197 kcal (2) G-P(sol) polarization free energy of solvation -32.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.192 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds