Wall clock time and date at job start Tue Mar 31 2020 22:38:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47363 * 2 1 4 4 H 1.09000 * 109.86823 * 55.81410 * 3 2 1 5 5 C 1.54319 * 109.88441 * 294.78968 * 3 2 1 6 6 H 1.08998 * 110.71803 * 336.78230 * 5 3 2 7 7 N 1.46506 * 110.71804 * 99.87093 * 5 3 2 8 8 C 1.34768 * 120.00023 * 205.00386 * 7 5 3 9 9 O 1.21564 * 120.00165 * 359.97438 * 8 7 5 10 10 C 1.47771 * 120.00167 * 180.02562 * 8 7 5 11 11 C 1.40638 * 119.80211 * 359.97438 * 10 8 7 12 12 C 1.35701 * 120.92034 * 179.97438 * 11 10 8 13 13 C 1.40756 * 120.11443 * 0.02562 * 12 11 10 14 14 N 1.33650 * 120.83585 * 180.27113 * 13 12 11 15 15 C 1.31117 * 121.39494 * 180.27664 * 14 13 12 16 16 C 1.39308 * 121.76916 * 359.43803 * 15 14 13 17 17 C 1.36578 * 119.90891 * 0.27922 * 16 15 14 18 18 C 1.40897 * 118.15738 * 0.02562 * 17 16 15 19 19 C 1.38549 * 119.80576 * 179.97438 * 10 8 7 20 20 C 1.55154 * 102.94628 * 218.23449 * 5 3 2 21 21 C 1.54916 * 101.58033 * 35.50152 * 20 5 3 22 22 N 1.47025 * 110.01147 * 176.90424 * 3 2 1 23 23 C 1.36939 * 125.64841 * 298.40066 * 22 3 2 24 24 H 1.07996 * 119.99829 * 345.36794 * 23 22 3 25 25 C 1.38818 * 119.99883 * 165.36823 * 23 22 3 26 26 N 1.31623 * 119.99741 * 359.97438 * 25 23 22 27 27 Si 1.86792 * 119.99946 * 179.97438 * 25 23 22 28 28 H 1.48504 * 109.47225 * 0.02562 * 27 25 23 29 29 H 1.48508 * 109.47036 * 119.99884 * 27 25 23 30 30 H 1.48499 * 109.47272 * 239.99853 * 27 25 23 31 31 H 1.08999 * 109.47055 * 65.57716 * 1 2 3 32 32 H 1.08998 * 109.47479 * 185.57789 * 1 2 3 33 33 H 1.08996 * 109.46693 * 305.58378 * 1 2 3 34 34 H 1.09002 * 109.46703 * 239.99995 * 2 1 3 35 35 H 1.09003 * 109.47308 * 120.00508 * 2 1 3 36 36 H 0.97003 * 119.99855 * 24.99750 * 7 5 3 37 37 H 1.07996 * 119.53635 * 359.95978 * 11 10 8 38 38 H 1.07996 * 119.93961 * 180.02562 * 12 11 10 39 39 H 1.08002 * 119.10965 * 179.71896 * 15 14 13 40 40 H 1.08001 * 120.04901 * 180.25546 * 16 15 14 41 41 H 1.07998 * 120.92915 * 180.02562 * 17 16 15 42 42 H 1.07995 * 120.29700 * 0.02562 * 19 10 8 43 43 H 1.08996 * 111.00681 * 153.57705 * 20 5 3 44 44 H 1.08998 * 111.00603 * 277.43242 * 20 5 3 45 45 H 1.08994 * 110.36591 * 204.15238 * 21 20 5 46 46 H 1.09004 * 110.45327 * 81.87369 * 21 20 5 47 47 H 0.97005 * 119.99685 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6205 1.9838 0.8480 5 6 1.6414 2.1402 -1.3175 6 1 1.4661 1.4067 -2.1045 7 7 0.4572 2.9802 -1.1214 8 6 -0.3464 3.2663 -2.1648 9 8 -0.0884 2.8277 -3.2688 10 6 -1.5405 4.1140 -1.9671 11 6 -1.8348 4.6197 -0.6882 12 6 -2.9250 5.4007 -0.4811 13 6 -3.7816 5.7162 -1.5526 14 7 -4.8562 6.4885 -1.3660 15 6 -5.6644 6.7849 -2.3550 16 6 -5.4400 6.3217 -3.6496 17 6 -4.3570 5.5320 -3.9121 18 6 -3.4943 5.2105 -2.8455 19 6 -2.3635 4.4060 -3.0428 20 6 2.8846 3.0107 -1.6398 21 6 4.0371 2.1042 -1.1399 22 7 3.5083 1.4570 0.0746 23 6 4.2602 0.9533 1.1023 24 1 3.7934 0.7148 2.0465 25 6 5.6225 0.7493 0.9304 26 7 6.1914 1.0395 -0.2205 27 14 6.6483 0.0629 2.3325 28 1 5.7774 -0.1790 3.5108 29 1 7.2733 -1.2159 1.9087 30 1 7.7097 1.0371 2.6925 31 1 -0.3633 0.4249 -0.9357 32 1 -0.3634 -1.0228 0.0999 33 1 -0.3632 0.5980 0.8358 34 1 1.8933 -0.5139 -0.8900 35 1 1.8934 -0.5139 0.8899 36 1 0.2515 3.3304 -0.2404 37 1 -1.1842 4.3829 0.1406 38 1 -3.1357 5.7809 0.5075 39 1 -6.5247 7.4085 -2.1617 40 1 -6.1216 6.5863 -4.4444 41 1 -4.1670 5.1642 -4.9096 42 1 -2.1362 4.0165 -4.0241 43 1 2.9672 3.1923 -2.7114 44 1 2.8582 3.9496 -1.0869 45 1 4.9143 2.7043 -0.8986 46 1 4.2857 1.3549 -1.8914 47 1 7.1433 0.8966 -0.3407 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001087710400.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:38:45 Heat of formation + Delta-G solvation = 21.609812 kcal Electronic energy + Delta-G solvation = -28747.953758 eV Core-core repulsion = 24895.123058 eV Total energy + Delta-G solvation = -3852.830700 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.95077 -41.00391 -39.39410 -37.66770 -35.70772 -34.53339 -34.29380 -33.53778 -31.85360 -31.09477 -30.65480 -28.19465 -26.63140 -25.52872 -24.84887 -23.72482 -23.08117 -22.34724 -21.80341 -21.30736 -19.35160 -18.78091 -18.73935 -17.96394 -17.22857 -16.85485 -16.67735 -16.08893 -15.78021 -15.61430 -15.41875 -15.40621 -15.18475 -14.98561 -14.65832 -14.42763 -14.33217 -13.97324 -13.79970 -13.55219 -13.24371 -13.08815 -12.91083 -12.74606 -12.70400 -12.59332 -12.44648 -12.21822 -12.02439 -11.96828 -11.90637 -11.59344 -11.57981 -11.37441 -11.06209 -10.68190 -10.50692 -10.09986 -9.80186 -9.32843 -8.82639 -7.85295 -5.23169 -0.80098 -0.33501 0.88058 1.40943 1.47321 1.48285 1.58239 2.02573 2.29520 2.51470 3.09235 3.27685 3.34730 3.52068 3.56325 3.68108 3.75830 3.83276 3.90869 3.97734 4.01877 4.06358 4.18886 4.30682 4.37246 4.41343 4.53045 4.60383 4.64150 4.74367 4.77619 4.85050 4.89906 4.97360 5.01999 5.03906 5.13833 5.19122 5.20146 5.27531 5.29720 5.45416 5.49088 5.50754 5.58169 5.65296 5.72402 5.76376 6.23763 6.50566 6.89264 7.09460 7.15682 7.76955 8.44110 9.26233 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.025717 B = 0.002267 C = 0.002234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1088.500434 B =12350.252956 C =12529.853642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.126 4.126 3 C 0.158 3.842 4 H 0.054 0.946 5 C 0.156 3.844 6 H 0.080 0.920 7 N -0.695 5.695 8 C 0.560 3.440 9 O -0.577 6.577 10 C -0.144 4.144 11 C -0.071 4.071 12 C -0.103 4.103 13 C 0.124 3.876 14 N -0.509 5.509 15 C 0.139 3.861 16 C -0.172 4.172 17 C -0.054 4.054 18 C -0.130 4.130 19 C -0.028 4.028 20 C -0.142 4.142 21 C 0.182 3.818 22 N -0.612 5.612 23 C -0.229 4.229 24 H 0.083 0.917 25 C -0.064 4.064 26 N -0.950 5.950 27 Si 0.974 3.026 28 H -0.263 1.263 29 H -0.296 1.296 30 H -0.293 1.293 31 H 0.046 0.954 32 H 0.058 0.942 33 H 0.067 0.933 34 H 0.035 0.965 35 H 0.050 0.950 36 H 0.412 0.588 37 H 0.155 0.845 38 H 0.155 0.845 39 H 0.192 0.808 40 H 0.177 0.823 41 H 0.164 0.836 42 H 0.144 0.856 43 H 0.067 0.933 44 H 0.075 0.925 45 H 0.041 0.959 46 H -0.006 1.006 47 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.124 11.348 -4.316 28.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.165 4.165 3 C 0.051 3.949 4 H 0.072 0.928 5 C 0.051 3.949 6 H 0.098 0.902 7 N -0.346 5.346 8 C 0.349 3.651 9 O -0.458 6.458 10 C -0.147 4.147 11 C -0.091 4.091 12 C -0.121 4.121 13 C 0.003 3.997 14 N -0.217 5.217 15 C -0.033 4.033 16 C -0.191 4.191 17 C -0.079 4.079 18 C -0.132 4.132 19 C -0.047 4.047 20 C -0.182 4.182 21 C 0.056 3.944 22 N -0.337 5.337 23 C -0.358 4.358 24 H 0.101 0.899 25 C -0.258 4.258 26 N -0.598 5.598 27 Si 0.803 3.197 28 H -0.187 1.187 29 H -0.224 1.224 30 H -0.221 1.221 31 H 0.065 0.935 32 H 0.077 0.923 33 H 0.086 0.914 34 H 0.054 0.946 35 H 0.069 0.931 36 H 0.251 0.749 37 H 0.173 0.827 38 H 0.172 0.828 39 H 0.209 0.791 40 H 0.194 0.806 41 H 0.182 0.818 42 H 0.162 0.838 43 H 0.085 0.915 44 H 0.093 0.907 45 H 0.059 0.941 46 H 0.012 0.988 47 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -25.789 11.253 -4.109 28.435 hybrid contribution 1.491 -0.847 -0.060 1.716 sum -24.298 10.406 -4.169 26.759 Atomic orbital electron populations 1.21653 0.93929 1.01942 1.01678 1.21896 0.96356 0.97661 1.00625 1.21269 0.84472 0.94573 0.94588 0.92816 1.21687 0.83804 0.92001 0.97440 0.90180 1.45743 1.25384 1.51352 1.12110 1.18489 0.82784 0.79871 0.83957 1.90759 1.74567 1.54747 1.25688 1.19852 0.96613 1.02449 0.95762 1.21112 0.97029 0.95184 0.95795 1.20882 0.93538 0.98526 0.99164 1.19294 0.93481 0.94371 0.92562 1.68127 1.04175 1.13608 1.35814 1.23733 0.96790 0.94258 0.88504 1.22320 0.98965 0.98532 0.99294 1.21948 0.92531 0.94379 0.99072 1.18980 0.97589 1.01101 0.95517 1.21540 0.91126 0.92898 0.99180 1.23244 0.95543 0.98750 1.00614 1.21133 0.93807 0.92325 0.87124 1.44684 1.00541 1.68355 1.20139 1.19339 0.90253 1.34543 0.91674 0.89893 1.25719 0.98630 1.02109 0.99304 1.70149 1.10248 1.54574 1.24841 0.85069 0.78583 0.77104 0.78940 1.18696 1.22362 1.22066 0.93473 0.92272 0.91420 0.94607 0.93091 0.74936 0.82734 0.82760 0.79075 0.80601 0.81835 0.83828 0.91467 0.90675 0.94058 0.98782 0.94418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.67 9.57 71.98 0.69 -2.98 16 2 C -0.13 -4.56 5.42 30.59 0.17 -4.39 16 3 C 0.16 6.04 2.93 45.34 0.13 6.17 16 4 H 0.05 1.89 7.72 -2.39 -0.02 1.87 16 5 C 0.16 5.47 2.02 46.18 0.09 5.57 16 6 H 0.08 3.13 7.19 -2.39 -0.02 3.11 16 7 N -0.69 -18.76 4.85 -439.86 -2.13 -20.90 16 8 C 0.56 16.03 7.77 86.77 0.67 16.71 16 9 O -0.58 -20.89 15.95 -3.92 -0.06 -20.95 16 10 C -0.14 -3.28 5.87 -20.10 -0.12 -3.40 16 11 C -0.07 -1.29 9.44 22.27 0.21 -1.08 16 12 C -0.10 -1.88 9.95 22.30 0.22 -1.65 16 13 C 0.12 2.52 6.61 40.36 0.27 2.79 16 14 N -0.51 -9.59 10.33 -188.45 -1.95 -11.54 16 15 C 0.14 1.63 11.15 85.06 0.95 2.58 16 16 C -0.17 -1.54 10.03 22.14 0.22 -1.31 16 17 C -0.05 -0.68 9.89 22.53 0.22 -0.46 16 18 C -0.13 -2.47 5.74 -21.28 -0.12 -2.59 16 19 C -0.03 -0.59 9.35 22.82 0.21 -0.38 16 20 C -0.14 -5.51 6.77 31.99 0.22 -5.29 16 21 C 0.18 9.04 5.41 86.86 0.47 9.51 16 22 N -0.61 -30.29 3.13 -668.25 -2.09 -32.39 16 23 C -0.23 -12.36 9.76 84.03 0.82 -11.54 16 24 H 0.08 4.26 7.83 -2.91 -0.02 4.24 16 25 C -0.06 -3.61 5.47 84.86 0.46 -3.14 16 26 N -0.95 -56.96 10.58 21.65 0.23 -56.73 16 27 Si 0.97 45.25 29.55 68.60 2.03 47.28 16 28 H -0.26 -11.36 7.11 99.48 0.71 -10.65 16 29 H -0.30 -13.95 7.11 99.48 0.71 -13.24 16 30 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 31 H 0.05 1.31 7.40 -2.39 -0.02 1.29 16 32 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 33 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 34 H 0.04 1.43 8.07 -2.39 -0.02 1.42 16 35 H 0.05 1.98 7.91 -2.39 -0.02 1.96 16 36 H 0.41 8.69 6.35 -92.71 -0.59 8.10 16 37 H 0.16 2.02 6.35 -2.91 -0.02 2.00 16 38 H 0.15 2.28 8.06 -2.91 -0.02 2.26 16 39 H 0.19 0.84 8.06 -2.91 -0.02 0.81 16 40 H 0.18 0.25 8.06 -2.91 -0.02 0.22 16 41 H 0.16 1.27 8.06 -2.91 -0.02 1.24 16 42 H 0.14 3.02 7.62 -2.91 -0.02 3.00 16 43 H 0.07 2.56 8.14 -2.39 -0.02 2.54 16 44 H 0.07 2.72 8.14 -2.39 -0.02 2.70 16 45 H 0.04 2.30 6.93 -2.39 -0.02 2.28 16 46 H -0.01 -0.33 8.06 -2.38 -0.02 -0.35 16 47 H 0.25 14.43 8.31 -92.70 -0.77 13.66 16 Total: -1.00 -73.78 383.36 2.21 -71.57 By element: Atomic # 1 Polarization: 18.15 SS G_CDS: 0.40 Total: 18.54 kcal Atomic # 6 Polarization: -0.68 SS G_CDS: 5.79 Total: 5.11 kcal Atomic # 7 Polarization: -115.61 SS G_CDS: -5.94 Total: -121.55 kcal Atomic # 8 Polarization: -20.89 SS G_CDS: -0.06 Total: -20.95 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 2.03 Total: 47.28 kcal Total: -73.78 2.21 -71.57 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087710400.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.178 kcal (2) G-P(sol) polarization free energy of solvation -73.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.568 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds