Wall clock time and date at job start Tue Mar 31 2020 22:38:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52991 * 109.47072 * 2 1 4 4 H 1.08998 * 110.00544 * 311.50925 * 3 2 1 5 5 C 1.54337 * 109.99334 * 190.47346 * 3 2 1 6 6 H 1.09005 * 110.51204 * 336.97803 * 5 3 2 7 7 N 1.46498 * 111.00297 * 100.12773 * 5 3 2 8 8 C 1.34778 * 120.00123 * 200.24236 * 7 5 3 9 9 O 1.21550 * 119.99846 * 359.97438 * 8 7 5 10 10 C 1.47888 * 120.00011 * 180.02562 * 8 7 5 11 11 C 1.40565 * 119.70419 * 359.71608 * 10 8 7 12 12 C 1.35816 * 120.73124 * 179.77391 * 11 10 8 13 13 C 1.40543 * 119.98457 * 0.48541 * 12 11 10 14 14 C 1.40815 * 121.13099 * 179.75499 * 13 12 11 15 15 C 1.36554 * 118.19937 * 180.02562 * 14 13 12 16 16 C 1.39419 * 119.93717 * 359.97438 * 15 14 13 17 17 N 1.31023 * 121.71619 * 0.02740 * 16 15 14 18 18 C 1.33750 * 121.34773 * 359.95590 * 17 16 15 19 19 C 1.38410 * 119.70394 * 179.97438 * 10 8 7 20 20 C 1.55153 * 103.02484 * 218.66740 * 5 3 2 21 21 C 1.54912 * 101.57877 * 35.30695 * 20 5 3 22 22 N 1.47023 * 109.88436 * 72.60852 * 3 2 1 23 23 C 1.36941 * 125.64449 * 298.39881 * 22 3 2 24 24 H 1.07989 * 120.00345 * 46.91818 * 23 22 3 25 25 C 1.38816 * 119.99427 * 226.91421 * 23 22 3 26 26 N 1.31612 * 119.99668 * 192.98383 * 25 23 22 27 27 Si 1.86799 * 120.00059 * 12.99170 * 25 23 22 28 28 H 1.48500 * 109.46884 * 267.29175 * 27 25 23 29 29 H 1.48501 * 109.47361 * 27.28732 * 27 25 23 30 30 H 1.48499 * 109.47233 * 147.29223 * 27 25 23 31 31 H 1.08996 * 109.46870 * 278.57546 * 1 2 3 32 32 H 1.09000 * 109.47047 * 38.57519 * 1 2 3 33 33 H 1.09003 * 109.46879 * 158.57301 * 1 2 3 34 34 H 1.09000 * 109.47109 * 239.99892 * 2 1 3 35 35 H 1.08998 * 109.47072 * 120.00315 * 2 1 3 36 36 H 0.97003 * 120.00276 * 20.23492 * 7 5 3 37 37 H 1.07996 * 119.63424 * 0.03042 * 11 10 8 38 38 H 1.07999 * 120.00872 * 180.24084 * 12 11 10 39 39 H 1.08000 * 120.90006 * 0.03936 * 14 13 12 40 40 H 1.08004 * 120.02977 * 179.97438 * 15 14 13 41 41 H 1.07998 * 119.14037 * 179.97438 * 16 15 14 42 42 H 1.07999 * 120.22988 * 359.95256 * 19 10 8 43 43 H 1.08998 * 111.00629 * 277.23684 * 20 5 3 44 44 H 1.08997 * 111.03733 * 153.39042 * 20 5 3 45 45 H 1.09005 * 110.36538 * 204.15466 * 21 20 5 46 46 H 1.08994 * 110.37184 * 81.83019 * 21 20 5 47 47 H 0.97002 * 119.99749 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5243 2.0202 -0.7670 5 6 3.5605 1.4646 -0.2636 6 1 4.0087 0.5080 0.0053 7 7 3.8461 1.7937 -1.6623 8 6 5.0406 1.4750 -2.1992 9 8 5.8809 0.9149 -1.5228 10 6 5.3291 1.8078 -3.6110 11 6 4.3510 2.4511 -4.3889 12 6 4.5954 2.7705 -5.6862 13 6 5.8337 2.4485 -6.2675 14 6 6.1109 2.7637 -7.6116 15 6 7.3335 2.4228 -8.1155 16 6 8.2667 1.7811 -7.3025 17 7 8.0058 1.4891 -6.0521 18 6 6.8280 1.7957 -5.4972 19 6 6.5580 1.4781 -4.1560 20 6 4.0624 2.5903 0.6787 21 6 3.1228 2.4171 1.8980 22 7 1.8170 2.0516 1.3194 23 6 0.5986 2.2424 1.9147 24 1 -0.1238 1.4400 1.9353 25 6 0.2924 3.4672 2.4917 26 7 -0.7561 3.5797 3.2793 27 14 1.3681 4.9557 2.1502 28 1 2.4097 5.0656 3.2030 29 1 2.0189 4.8024 0.8242 30 1 0.5311 6.1823 2.1521 31 1 -0.3633 0.1532 1.0162 32 1 -0.3633 0.8034 -0.6408 33 1 -0.3633 -0.9567 -0.3754 34 1 1.8933 -0.5138 -0.8900 35 1 1.8933 -0.5139 0.8899 36 1 3.1756 2.2409 -2.2021 37 1 3.3960 2.6979 -3.9490 38 1 3.8368 3.2682 -6.2720 39 1 5.3766 3.2617 -8.2273 40 1 7.5773 2.6502 -9.1428 41 1 9.2295 1.5170 -7.7143 42 1 7.3040 0.9808 -3.5539 43 1 3.9314 3.5707 0.2207 44 1 5.1027 2.4292 0.9612 45 1 3.0437 3.3526 2.4519 46 1 3.4864 1.6206 2.5471 47 1 -0.9703 4.4357 3.6823 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087766868.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:38:53 Heat of formation + Delta-G solvation = 45.192962 kcal Electronic energy + Delta-G solvation = -28791.270892 eV Core-core repulsion = 24939.462834 eV Total energy + Delta-G solvation = -3851.808058 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.24474 -39.90129 -38.13511 -36.92046 -34.28530 -33.84533 -32.60263 -32.24500 -31.08391 -30.36835 -29.27281 -27.19708 -25.36618 -24.25652 -24.00384 -22.50663 -22.04884 -21.37917 -20.39405 -19.80447 -18.48592 -17.80691 -17.25161 -16.94462 -16.38922 -16.30463 -15.20699 -14.99369 -14.84440 -14.53411 -14.45263 -14.25593 -14.02634 -13.99310 -13.75144 -13.44300 -12.87977 -12.65780 -12.46394 -12.26151 -12.21304 -12.06003 -11.90634 -11.85998 -11.48444 -11.22053 -10.95321 -10.93256 -10.82054 -10.48472 -10.30704 -10.05222 -9.99045 -9.91297 -9.84445 -9.43585 -9.21176 -8.84642 -8.64385 -8.54572 -6.64550 -6.01612 -3.60660 -0.09671 0.27244 1.52978 2.19054 3.07996 3.14848 3.29873 3.41740 3.47456 3.78425 3.90850 4.16163 4.30145 4.45325 4.48103 4.51056 4.59111 4.75397 4.80917 4.98224 5.08420 5.12899 5.20029 5.37931 5.41134 5.48153 5.52439 5.57860 5.66469 5.81638 5.86134 5.89002 5.93556 5.96099 6.06632 6.10498 6.18426 6.33437 6.36419 6.40781 6.50318 6.56485 6.63227 6.74314 6.84279 7.02645 7.06677 7.49943 7.54543 8.00267 8.20217 8.39349 8.84180 9.61357 10.24560 11.10791 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.019113 B = 0.002530 C = 0.002490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1464.617511 B =11064.568370 C =11243.618192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.124 4.124 3 C 0.155 3.845 4 H 0.044 0.956 5 C 0.135 3.865 6 H 0.097 0.903 7 N -0.708 5.708 8 C 0.556 3.444 9 O -0.533 6.533 10 C -0.112 4.112 11 C -0.089 4.089 12 C -0.100 4.100 13 C -0.088 4.088 14 C -0.061 4.061 15 C -0.170 4.170 16 C 0.128 3.872 17 N -0.466 5.466 18 C 0.116 3.884 19 C -0.024 4.024 20 C -0.146 4.146 21 C 0.119 3.881 22 N -0.598 5.598 23 C -0.253 4.253 24 H 0.090 0.910 25 C 0.041 3.959 26 N -0.903 5.903 27 Si 0.888 3.112 28 H -0.286 1.286 29 H -0.267 1.267 30 H -0.302 1.302 31 H 0.074 0.926 32 H 0.049 0.951 33 H 0.032 0.968 34 H 0.045 0.955 35 H 0.060 0.940 36 H 0.399 0.601 37 H 0.134 0.866 38 H 0.137 0.863 39 H 0.141 0.859 40 H 0.139 0.861 41 H 0.161 0.839 42 H 0.151 0.849 43 H 0.067 0.933 44 H 0.071 0.929 45 H 0.046 0.954 46 H 0.034 0.966 47 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.770 -1.530 -23.450 26.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.164 4.164 3 C 0.048 3.952 4 H 0.062 0.938 5 C 0.030 3.970 6 H 0.115 0.885 7 N -0.359 5.359 8 C 0.343 3.657 9 O -0.411 6.411 10 C -0.117 4.117 11 C -0.108 4.108 12 C -0.119 4.119 13 C -0.090 4.090 14 C -0.087 4.087 15 C -0.190 4.190 16 C -0.045 4.045 17 N -0.173 5.173 18 C -0.004 4.004 19 C -0.044 4.044 20 C -0.186 4.186 21 C -0.006 4.006 22 N -0.325 5.325 23 C -0.380 4.380 24 H 0.108 0.892 25 C -0.161 4.161 26 N -0.543 5.543 27 Si 0.718 3.282 28 H -0.213 1.213 29 H -0.192 1.192 30 H -0.230 1.230 31 H 0.093 0.907 32 H 0.068 0.932 33 H 0.051 0.949 34 H 0.063 0.937 35 H 0.079 0.921 36 H 0.235 0.765 37 H 0.152 0.848 38 H 0.155 0.845 39 H 0.159 0.841 40 H 0.157 0.843 41 H 0.178 0.822 42 H 0.169 0.831 43 H 0.086 0.914 44 H 0.089 0.911 45 H 0.064 0.936 46 H 0.052 0.948 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 13.710 -2.239 -22.155 26.150 hybrid contribution -0.442 1.716 -0.948 2.010 sum 13.267 -0.523 -23.103 26.647 Atomic orbital electron populations 1.21848 0.95485 0.99198 1.03558 1.21909 0.96847 0.97361 1.00253 1.21302 0.90111 0.93465 0.90341 0.93795 1.22135 0.97091 0.98923 0.78844 0.88478 1.45965 1.15933 1.60495 1.13513 1.18137 0.82365 0.79011 0.86236 1.90783 1.46081 1.42010 1.62223 1.19991 0.95206 1.02053 0.94448 1.21036 0.98841 0.96754 0.94128 1.20883 0.95699 1.00025 0.95299 1.18968 0.95561 0.99625 0.94885 1.21530 0.97125 0.96329 0.93674 1.21974 0.94778 1.00431 1.01795 1.23028 0.99325 0.93103 0.89060 1.68044 1.18983 1.17577 1.12726 1.18773 0.89933 0.97472 0.94261 1.21250 0.95915 0.94928 0.92297 1.23197 0.99439 0.98510 0.97421 1.21902 0.86509 0.98404 0.93779 1.44495 1.01589 1.72792 1.13603 1.18708 0.90890 0.96400 1.32044 0.89245 1.25737 0.95457 0.97583 0.97296 1.69777 1.27967 1.25384 1.31205 0.86684 0.79625 0.82644 0.79217 1.21304 1.19189 1.23012 0.90684 0.93175 0.94930 0.93671 0.92084 0.76521 0.84816 0.84525 0.84115 0.84306 0.82160 0.83103 0.91385 0.91080 0.93630 0.94844 0.92561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.56 9.12 37.16 0.34 -2.22 16 2 C -0.12 -2.16 5.40 -26.73 -0.14 -2.30 16 3 C 0.15 2.88 2.93 -66.95 -0.20 2.69 16 4 H 0.04 0.82 7.45 -51.93 -0.39 0.44 16 5 C 0.13 2.26 2.74 -66.09 -0.18 2.08 16 6 H 0.10 1.70 7.39 -51.93 -0.38 1.32 16 7 N -0.71 -9.94 5.16 -52.95 -0.27 -10.21 16 8 C 0.56 8.18 7.77 -12.31 -0.10 8.08 16 9 O -0.53 -9.60 16.02 5.32 0.09 -9.51 16 10 C -0.11 -1.36 5.87 -105.01 -0.62 -1.98 16 11 C -0.09 -0.84 9.44 -39.57 -0.37 -1.22 16 12 C -0.10 -0.83 9.74 -39.58 -0.39 -1.21 16 13 C -0.09 -0.83 5.75 -106.73 -0.61 -1.44 16 14 C -0.06 -0.41 9.88 -39.22 -0.39 -0.80 16 15 C -0.17 -1.01 10.03 -39.75 -0.40 -1.41 16 16 C 0.13 0.98 11.15 -17.46 -0.19 0.79 16 17 N -0.47 -5.22 10.34 -10.98 -0.11 -5.34 16 18 C 0.12 1.35 6.60 -84.87 -0.56 0.79 16 19 C -0.02 -0.30 9.56 -38.68 -0.37 -0.67 16 20 C -0.15 -2.65 6.77 -24.58 -0.17 -2.82 16 21 C 0.12 2.51 6.25 -2.53 -0.02 2.50 16 22 N -0.60 -13.57 2.47 -162.57 -0.40 -13.97 16 23 C -0.25 -6.70 9.56 -15.06 -0.14 -6.85 16 24 H 0.09 2.51 5.23 -52.49 -0.27 2.24 16 25 C 0.04 1.14 5.48 -17.43 -0.10 1.05 16 26 N -0.90 -26.80 13.97 55.49 0.78 -26.02 16 27 Si 0.89 21.91 25.12 -169.99 -4.27 17.64 16 28 H -0.29 -7.01 6.83 56.52 0.39 -6.62 16 29 H -0.27 -6.34 6.93 56.52 0.39 -5.95 16 30 H -0.30 -7.59 7.11 56.52 0.40 -7.19 16 31 H 0.07 1.54 5.53 -51.93 -0.29 1.25 16 32 H 0.05 0.89 7.79 -51.93 -0.40 0.49 16 33 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 34 H 0.04 0.69 8.12 -51.93 -0.42 0.27 16 35 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 36 H 0.40 4.65 6.31 -40.82 -0.26 4.39 16 37 H 0.13 1.00 6.34 -52.49 -0.33 0.67 16 38 H 0.14 0.73 8.06 -52.49 -0.42 0.30 16 39 H 0.14 0.54 8.06 -52.49 -0.42 0.12 16 40 H 0.14 0.39 8.06 -52.48 -0.42 -0.04 16 41 H 0.16 0.72 8.06 -52.49 -0.42 0.30 16 42 H 0.15 2.00 7.60 -52.49 -0.40 1.60 16 43 H 0.07 1.25 7.97 -51.93 -0.41 0.84 16 44 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 45 H 0.05 1.04 4.20 -51.93 -0.22 0.82 16 46 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 47 H 0.26 7.47 8.31 -40.82 -0.34 7.14 16 LS Contribution 375.03 15.07 5.65 5.65 Total: -1.00 -33.04 375.03 -9.47 -42.50 By element: Atomic # 1 Polarization: 10.53 SS G_CDS: -6.32 Total: 4.21 kcal Atomic # 6 Polarization: -0.35 SS G_CDS: -4.60 Total: -4.95 kcal Atomic # 7 Polarization: -55.53 SS G_CDS: -0.01 Total: -55.55 kcal Atomic # 8 Polarization: -9.60 SS G_CDS: 0.09 Total: -9.51 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -4.27 Total: 17.64 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -33.04 -9.47 -42.50 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087766868.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.697 kcal (2) G-P(sol) polarization free energy of solvation -33.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.504 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds