Wall clock time and date at job start Tue Mar 31 2020 22:38:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52991 * 109.47072 * 2 1 4 4 H 1.08998 * 110.00544 * 311.50925 * 3 2 1 5 5 C 1.54337 * 109.99334 * 190.47346 * 3 2 1 6 6 H 1.09005 * 110.51204 * 336.97803 * 5 3 2 7 7 N 1.46498 * 111.00297 * 100.12773 * 5 3 2 8 8 C 1.34778 * 120.00123 * 200.24236 * 7 5 3 9 9 O 1.21550 * 119.99846 * 359.97438 * 8 7 5 10 10 C 1.47888 * 120.00011 * 180.02562 * 8 7 5 11 11 C 1.40565 * 119.70419 * 359.71608 * 10 8 7 12 12 C 1.35816 * 120.73124 * 179.77391 * 11 10 8 13 13 C 1.40543 * 119.98457 * 0.48541 * 12 11 10 14 14 C 1.40815 * 121.13099 * 179.75499 * 13 12 11 15 15 C 1.36554 * 118.19937 * 180.02562 * 14 13 12 16 16 C 1.39419 * 119.93717 * 359.97438 * 15 14 13 17 17 N 1.31023 * 121.71619 * 0.02740 * 16 15 14 18 18 C 1.33750 * 121.34773 * 359.95590 * 17 16 15 19 19 C 1.38410 * 119.70394 * 179.97438 * 10 8 7 20 20 C 1.55153 * 103.02484 * 218.66740 * 5 3 2 21 21 C 1.54912 * 101.57877 * 35.30695 * 20 5 3 22 22 N 1.47023 * 109.88436 * 72.60852 * 3 2 1 23 23 C 1.36941 * 125.64449 * 298.39881 * 22 3 2 24 24 H 1.07989 * 120.00345 * 46.91818 * 23 22 3 25 25 C 1.38816 * 119.99427 * 226.91421 * 23 22 3 26 26 N 1.31612 * 119.99668 * 192.98383 * 25 23 22 27 27 Si 1.86799 * 120.00059 * 12.99170 * 25 23 22 28 28 H 1.48500 * 109.46884 * 267.29175 * 27 25 23 29 29 H 1.48501 * 109.47361 * 27.28732 * 27 25 23 30 30 H 1.48499 * 109.47233 * 147.29223 * 27 25 23 31 31 H 1.08996 * 109.46870 * 278.57546 * 1 2 3 32 32 H 1.09000 * 109.47047 * 38.57519 * 1 2 3 33 33 H 1.09003 * 109.46879 * 158.57301 * 1 2 3 34 34 H 1.09000 * 109.47109 * 239.99892 * 2 1 3 35 35 H 1.08998 * 109.47072 * 120.00315 * 2 1 3 36 36 H 0.97003 * 120.00276 * 20.23492 * 7 5 3 37 37 H 1.07996 * 119.63424 * 0.03042 * 11 10 8 38 38 H 1.07999 * 120.00872 * 180.24084 * 12 11 10 39 39 H 1.08000 * 120.90006 * 0.03936 * 14 13 12 40 40 H 1.08004 * 120.02977 * 179.97438 * 15 14 13 41 41 H 1.07998 * 119.14037 * 179.97438 * 16 15 14 42 42 H 1.07999 * 120.22988 * 359.95256 * 19 10 8 43 43 H 1.08998 * 111.00629 * 277.23684 * 20 5 3 44 44 H 1.08997 * 111.03733 * 153.39042 * 20 5 3 45 45 H 1.09005 * 110.36538 * 204.15466 * 21 20 5 46 46 H 1.08994 * 110.37184 * 81.83019 * 21 20 5 47 47 H 0.97002 * 119.99749 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5243 2.0202 -0.7670 5 6 3.5605 1.4646 -0.2636 6 1 4.0087 0.5080 0.0053 7 7 3.8461 1.7937 -1.6623 8 6 5.0406 1.4750 -2.1992 9 8 5.8809 0.9149 -1.5228 10 6 5.3291 1.8078 -3.6110 11 6 4.3510 2.4511 -4.3889 12 6 4.5954 2.7705 -5.6862 13 6 5.8337 2.4485 -6.2675 14 6 6.1109 2.7637 -7.6116 15 6 7.3335 2.4228 -8.1155 16 6 8.2667 1.7811 -7.3025 17 7 8.0058 1.4891 -6.0521 18 6 6.8280 1.7957 -5.4972 19 6 6.5580 1.4781 -4.1560 20 6 4.0624 2.5903 0.6787 21 6 3.1228 2.4171 1.8980 22 7 1.8170 2.0516 1.3194 23 6 0.5986 2.2424 1.9147 24 1 -0.1238 1.4400 1.9353 25 6 0.2924 3.4672 2.4917 26 7 -0.7561 3.5797 3.2793 27 14 1.3681 4.9557 2.1502 28 1 2.4097 5.0656 3.2030 29 1 2.0189 4.8024 0.8242 30 1 0.5311 6.1823 2.1521 31 1 -0.3633 0.1532 1.0162 32 1 -0.3633 0.8034 -0.6408 33 1 -0.3633 -0.9567 -0.3754 34 1 1.8933 -0.5138 -0.8900 35 1 1.8933 -0.5139 0.8899 36 1 3.1756 2.2409 -2.2021 37 1 3.3960 2.6979 -3.9490 38 1 3.8368 3.2682 -6.2720 39 1 5.3766 3.2617 -8.2273 40 1 7.5773 2.6502 -9.1428 41 1 9.2295 1.5170 -7.7143 42 1 7.3040 0.9808 -3.5539 43 1 3.9314 3.5707 0.2207 44 1 5.1027 2.4292 0.9612 45 1 3.0437 3.3526 2.4519 46 1 3.4864 1.6206 2.5471 47 1 -0.9703 4.4357 3.6823 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001087766868.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:38:52 Heat of formation + Delta-G solvation = 24.001801 kcal Electronic energy + Delta-G solvation = -28792.189809 eV Core-core repulsion = 24939.462834 eV Total energy + Delta-G solvation = -3852.726975 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.97154 -41.05130 -39.55518 -37.72957 -35.71121 -34.48100 -34.27470 -33.94303 -32.03099 -31.04991 -30.83651 -28.67037 -26.61075 -25.41102 -24.87825 -23.68666 -23.20986 -22.52249 -21.74127 -21.28028 -19.49216 -18.87096 -18.54510 -18.12130 -17.65256 -17.18246 -16.62591 -16.09430 -16.05902 -15.70078 -15.49565 -15.29666 -15.23542 -14.88062 -14.57779 -14.47500 -14.39523 -14.14112 -13.92600 -13.79247 -13.55694 -13.17390 -13.02087 -12.94747 -12.75200 -12.67731 -12.53474 -12.33816 -12.19038 -11.85420 -11.75966 -11.56683 -11.53259 -11.25365 -11.13835 -10.64869 -10.49960 -10.18251 -9.82640 -9.34370 -8.55287 -8.13133 -5.71095 -0.79088 -0.37448 0.85658 1.32812 1.39462 1.43292 1.51794 1.93763 2.23989 2.43846 3.07422 3.08784 3.22574 3.36195 3.52751 3.62192 3.67455 3.80999 3.82735 3.94345 4.03782 4.06538 4.10687 4.27772 4.28685 4.40703 4.45968 4.57196 4.59762 4.70223 4.73096 4.84233 4.86799 4.88815 4.94741 5.00263 5.08538 5.09725 5.15754 5.17633 5.21863 5.31163 5.35377 5.50155 5.54760 5.58913 5.76865 5.98359 6.37791 6.43960 6.86963 6.90283 7.08596 7.53928 8.25229 9.01345 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.019113 B = 0.002530 C = 0.002490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1464.617511 B =11064.568370 C =11243.618192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.119 4.119 3 C 0.154 3.846 4 H 0.052 0.948 5 C 0.149 3.851 6 H 0.092 0.908 7 N -0.697 5.697 8 C 0.559 3.441 9 O -0.573 6.573 10 C -0.119 4.119 11 C -0.100 4.100 12 C -0.084 4.084 13 C -0.101 4.101 14 C -0.059 4.059 15 C -0.162 4.162 16 C 0.126 3.874 17 N -0.511 5.511 18 C 0.092 3.908 19 C -0.047 4.047 20 C -0.137 4.137 21 C 0.113 3.887 22 N -0.612 5.612 23 C -0.236 4.236 24 H 0.067 0.933 25 C -0.015 4.015 26 N -0.950 5.950 27 Si 0.943 3.057 28 H -0.286 1.286 29 H -0.250 1.250 30 H -0.309 1.309 31 H 0.039 0.961 32 H 0.047 0.953 33 H 0.058 0.942 34 H 0.074 0.926 35 H 0.047 0.953 36 H 0.413 0.587 37 H 0.155 0.845 38 H 0.176 0.824 39 H 0.179 0.821 40 H 0.179 0.821 41 H 0.187 0.813 42 H 0.126 0.874 43 H 0.069 0.931 44 H 0.081 0.919 45 H 0.030 0.970 46 H 0.035 0.965 47 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.593 -0.588 -27.983 31.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.158 4.158 3 C 0.048 3.952 4 H 0.070 0.930 5 C 0.043 3.957 6 H 0.110 0.890 7 N -0.349 5.349 8 C 0.347 3.653 9 O -0.454 6.454 10 C -0.124 4.124 11 C -0.118 4.118 12 C -0.102 4.102 13 C -0.103 4.103 14 C -0.084 4.084 15 C -0.181 4.181 16 C -0.047 4.047 17 N -0.220 5.220 18 C -0.027 4.027 19 C -0.067 4.067 20 C -0.176 4.176 21 C -0.012 4.012 22 N -0.339 5.339 23 C -0.365 4.365 24 H 0.084 0.916 25 C -0.212 4.212 26 N -0.594 5.594 27 Si 0.773 3.227 28 H -0.214 1.214 29 H -0.173 1.173 30 H -0.238 1.238 31 H 0.058 0.942 32 H 0.066 0.934 33 H 0.077 0.923 34 H 0.092 0.908 35 H 0.066 0.934 36 H 0.252 0.748 37 H 0.173 0.827 38 H 0.193 0.807 39 H 0.196 0.804 40 H 0.196 0.804 41 H 0.204 0.796 42 H 0.144 0.856 43 H 0.088 0.912 44 H 0.100 0.900 45 H 0.048 0.952 46 H 0.053 0.947 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 14.543 -1.304 -26.734 30.462 hybrid contribution -0.591 1.306 0.301 1.465 sum 13.952 0.002 -26.434 29.890 Atomic orbital electron populations 1.21752 0.95796 1.00582 1.01358 1.21845 0.96425 0.96561 1.00984 1.21403 0.91583 0.93843 0.88337 0.92996 1.21799 0.95362 0.98275 0.80227 0.89021 1.45753 1.16288 1.60453 1.12411 1.18525 0.81713 0.77941 0.87123 1.90760 1.47302 1.43843 1.63465 1.19793 0.95977 1.03556 0.93098 1.21214 0.98934 0.96989 0.94690 1.21311 0.95791 0.98258 0.94848 1.19289 0.95479 0.99383 0.96178 1.22004 0.98208 0.95601 0.92611 1.22415 0.93907 0.98602 1.03216 1.23677 1.00880 0.91917 0.88188 1.68018 1.19549 1.19687 1.14748 1.18863 0.91093 0.98671 0.94106 1.21153 0.95956 0.96280 0.93275 1.23109 0.99222 0.99044 0.96238 1.21962 0.86505 0.97621 0.95104 1.44572 1.00940 1.72969 1.15460 1.18664 0.91582 0.95504 1.30714 0.91587 1.26323 0.96854 1.00216 0.97789 1.69902 1.30403 1.25799 1.33320 0.85784 0.77927 0.79289 0.79741 1.21366 1.17341 1.23754 0.94220 0.93356 0.92313 0.90777 0.93419 0.74819 0.82744 0.80712 0.80415 0.80393 0.79569 0.85580 0.91188 0.90026 0.95188 0.94697 0.92842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.79 9.12 71.98 0.66 -4.13 16 2 C -0.12 -3.97 5.40 30.59 0.17 -3.80 16 3 C 0.15 5.53 2.93 45.34 0.13 5.67 16 4 H 0.05 1.82 7.45 -2.39 -0.02 1.80 16 5 C 0.15 4.78 2.74 46.18 0.13 4.90 16 6 H 0.09 3.11 7.39 -2.38 -0.02 3.09 16 7 N -0.70 -18.29 5.16 -439.72 -2.27 -20.56 16 8 C 0.56 16.14 7.77 86.80 0.67 16.81 16 9 O -0.57 -20.99 16.02 -3.87 -0.06 -21.06 16 10 C -0.12 -2.84 5.87 -20.11 -0.12 -2.96 16 11 C -0.10 -1.63 9.44 22.28 0.21 -1.42 16 12 C -0.08 -1.07 9.74 22.27 0.22 -0.85 16 13 C -0.10 -1.62 5.75 -21.23 -0.12 -1.74 16 14 C -0.06 -0.53 9.88 22.51 0.22 -0.30 16 15 C -0.16 -1.24 10.03 22.16 0.22 -1.02 16 16 C 0.13 1.64 11.15 85.10 0.95 2.59 16 17 N -0.51 -11.29 10.34 -188.66 -1.95 -13.24 16 18 C 0.09 2.11 6.60 40.25 0.27 2.38 16 19 C -0.05 -1.22 9.56 22.85 0.22 -1.00 16 20 C -0.14 -4.76 6.77 31.99 0.22 -4.54 16 21 C 0.11 4.70 6.25 86.86 0.54 5.25 16 22 N -0.61 -27.60 2.47 -668.25 -1.65 -29.24 16 23 C -0.24 -12.72 9.56 84.03 0.80 -11.91 16 24 H 0.07 3.86 5.23 -2.92 -0.02 3.84 16 25 C -0.01 -0.85 5.48 84.86 0.46 -0.38 16 26 N -0.95 -58.19 13.97 21.65 0.30 -57.89 16 27 Si 0.94 45.61 25.12 68.60 1.72 47.33 16 28 H -0.29 -13.73 6.83 99.48 0.68 -13.05 16 29 H -0.25 -11.18 6.93 99.48 0.69 -10.49 16 30 H -0.31 -15.16 7.11 99.48 0.71 -14.45 16 31 H 0.04 1.66 5.53 -2.39 -0.01 1.64 16 32 H 0.05 1.67 7.79 -2.39 -0.02 1.65 16 33 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 34 H 0.07 2.07 8.12 -2.39 -0.02 2.05 16 35 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 36 H 0.41 8.46 6.31 -92.71 -0.59 7.88 16 37 H 0.16 1.76 6.34 -2.91 -0.02 1.74 16 38 H 0.18 0.85 8.06 -2.91 -0.02 0.82 16 39 H 0.18 0.24 8.06 -2.91 -0.02 0.22 16 40 H 0.18 -0.05 8.06 -2.91 -0.02 -0.08 16 41 H 0.19 1.17 8.06 -2.91 -0.02 1.15 16 42 H 0.13 3.73 7.60 -2.91 -0.02 3.70 16 43 H 0.07 2.42 7.97 -2.39 -0.02 2.40 16 44 H 0.08 2.69 8.14 -2.39 -0.02 2.67 16 45 H 0.03 1.35 4.20 -2.38 -0.01 1.34 16 46 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 47 H 0.26 15.34 8.31 -92.71 -0.77 14.57 16 Total: -1.00 -76.13 375.03 2.32 -73.81 By element: Atomic # 1 Polarization: 16.95 SS G_CDS: 0.38 Total: 17.32 kcal Atomic # 6 Polarization: -2.32 SS G_CDS: 5.85 Total: 3.52 kcal Atomic # 7 Polarization: -115.37 SS G_CDS: -5.56 Total: -120.93 kcal Atomic # 8 Polarization: -20.99 SS G_CDS: -0.06 Total: -21.06 kcal Atomic # 14 Polarization: 45.61 SS G_CDS: 1.72 Total: 47.33 kcal Total: -76.13 2.32 -73.81 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087766868.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.811 kcal (2) G-P(sol) polarization free energy of solvation -76.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.810 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds