Wall clock time and date at job start Tue Mar 31 2020 22:39:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.46991 * 2 1 4 4 H 1.08998 * 109.99892 * 55.13933 * 3 2 1 5 5 C 1.54322 * 109.87998 * 294.04265 * 3 2 1 6 6 H 1.09004 * 110.72462 * 336.93007 * 5 3 2 7 7 N 1.46497 * 110.72027 * 100.02925 * 5 3 2 8 8 C 1.34777 * 120.00572 * 202.56056 * 7 5 3 9 9 O 1.21590 * 119.99121 * 359.97438 * 8 7 5 10 10 C 1.47562 * 120.00587 * 179.97438 * 8 7 5 11 11 C 1.38706 * 120.43046 * 353.97846 * 10 8 7 12 12 C 1.39004 * 120.74699 * 180.02562 * 11 10 8 13 13 C 1.36336 * 121.19304 * 0.02562 * 12 11 10 14 14 C 1.40355 * 119.93234 * 359.97438 * 13 12 11 15 15 C 1.40675 * 122.10539 * 179.97438 * 14 13 12 16 16 C 1.36263 * 118.66989 * 180.02562 * 15 14 13 17 17 N 1.32509 * 121.83638 * 0.02562 * 16 15 14 18 18 C 1.31314 * 122.72315 * 0.02562 * 17 16 15 19 19 C 1.40136 * 119.91483 * 359.97438 * 18 17 16 20 20 C 1.55158 * 103.10060 * 218.47927 * 5 3 2 21 21 C 1.54899 * 101.58386 * 35.41598 * 20 5 3 22 22 N 1.47327 * 110.06195 * 176.31417 * 3 2 1 23 23 C 1.36932 * 125.61144 * 298.24157 * 22 3 2 24 24 H 1.08006 * 120.00623 * 345.55347 * 23 22 3 25 25 C 1.38819 * 119.99726 * 165.55926 * 23 22 3 26 26 N 1.31615 * 119.99880 * 359.97438 * 25 23 22 27 27 Si 1.86794 * 119.99975 * 180.02562 * 25 23 22 28 28 H 1.48496 * 109.47386 * 59.99668 * 27 25 23 29 29 H 1.48502 * 109.47027 * 179.97438 * 27 25 23 30 30 H 1.48502 * 109.47180 * 299.99584 * 27 25 23 31 31 H 1.08996 * 109.47528 * 65.30659 * 1 2 3 32 32 H 1.08999 * 109.46812 * 185.30743 * 1 2 3 33 33 H 1.09002 * 109.46764 * 305.30441 * 1 2 3 34 34 H 1.08994 * 109.47109 * 240.00084 * 2 1 3 35 35 H 1.08999 * 109.47606 * 119.99440 * 2 1 3 36 36 H 0.97006 * 120.00114 * 22.55251 * 7 5 3 37 37 H 1.07994 * 119.62727 * 359.97438 * 11 10 8 38 38 H 1.08005 * 119.39757 * 180.02562 * 12 11 10 39 39 H 1.07998 * 120.03487 * 180.02562 * 13 12 11 40 40 H 1.08004 * 120.66656 * 0.04509 * 15 14 13 41 41 H 1.07999 * 119.08225 * 180.02562 * 16 15 14 42 42 H 1.08003 * 120.04577 * 179.72608 * 18 17 16 43 43 H 1.09007 * 111.00250 * 153.49320 * 20 5 3 44 44 H 1.08999 * 111.00344 * 277.29996 * 20 5 3 45 45 H 1.09000 * 110.36794 * 81.82798 * 21 20 5 46 46 H 1.09001 * 110.37450 * 204.15256 * 21 20 5 47 47 H 0.97003 * 120.00119 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6122 1.9892 0.8404 5 6 1.6574 2.1344 -1.3254 6 1 1.4892 1.3974 -2.1107 7 7 0.4731 2.9780 -1.1467 8 6 -0.2907 3.3012 -2.2090 9 8 0.0035 2.8927 -3.3158 10 6 -1.4839 4.1504 -2.0289 11 6 -1.8989 4.5185 -0.7576 12 6 -3.0222 5.3178 -0.5804 13 6 -3.7478 5.7624 -1.6456 14 6 -3.3630 5.4136 -2.9496 15 6 -4.0782 5.8462 -4.0811 16 6 -3.6426 5.4654 -5.3148 17 7 -2.5704 4.7031 -5.4729 18 6 -1.8569 4.2630 -4.4621 19 6 -2.2211 4.5984 -3.1511 20 6 2.9052 3.0001 -1.6431 21 6 4.0513 2.0956 -1.1257 22 7 3.5105 1.4587 0.0890 23 6 4.2519 0.9619 1.1274 24 1 3.7750 0.7262 2.0674 25 6 5.6167 0.7613 0.9721 26 7 6.1979 1.0482 -0.1734 27 14 6.6282 0.0828 2.3884 28 1 6.1100 -1.2554 2.7703 29 1 8.0478 -0.0376 1.9697 30 1 6.5307 1.0016 3.5510 31 1 -0.3634 0.4293 -0.9336 32 1 -0.3633 -1.0233 0.0951 33 1 -0.3633 0.5939 0.8387 34 1 1.8933 -0.5138 -0.8899 35 1 1.8934 -0.5137 0.8900 36 1 0.2386 3.3041 -0.2637 37 1 -1.3435 4.1795 0.1043 38 1 -3.3257 5.5917 0.4194 39 1 -4.6172 6.3829 -1.4863 40 1 -4.9548 6.4680 -3.9741 41 1 -4.1864 5.7941 -6.1880 42 1 -0.9928 3.6402 -4.6406 43 1 2.9978 3.1733 -2.7153 44 1 2.8751 3.9437 -1.0983 45 1 4.3037 1.3401 -1.8697 46 1 4.9276 2.6959 -0.8810 47 1 7.1515 0.9076 -0.2821 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087781667.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:39:10 Heat of formation + Delta-G solvation = 47.220977 kcal Electronic energy + Delta-G solvation = -29230.825279 eV Core-core repulsion = 25379.105163 eV Total energy + Delta-G solvation = -3851.720116 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.27074 -39.64978 -37.84810 -37.34279 -34.23138 -33.18937 -32.80011 -31.77862 -31.41851 -30.04683 -28.87513 -26.67847 -25.03476 -24.39298 -23.71677 -23.33737 -22.09331 -20.79789 -20.28781 -19.66570 -18.15427 -17.86295 -17.01124 -16.80050 -16.30207 -15.95083 -15.22310 -15.01966 -14.88965 -14.66998 -14.18906 -14.07456 -13.87033 -13.79028 -13.69407 -13.13045 -12.93708 -12.71620 -12.35609 -12.34158 -12.06409 -11.97946 -11.83678 -11.69514 -11.17915 -10.91172 -10.86590 -10.66063 -10.50148 -10.39773 -10.30653 -10.13065 -9.85618 -9.73935 -9.68517 -9.46060 -9.42123 -8.79475 -8.61397 -8.32603 -6.84714 -5.78025 -3.14735 -0.13778 0.62305 1.41916 2.52759 3.10236 3.16602 3.37263 3.42184 3.43207 3.90311 4.23737 4.30401 4.40845 4.45911 4.51278 4.62334 4.66758 4.80485 5.02194 5.16744 5.31410 5.34328 5.44305 5.45895 5.46228 5.51143 5.65712 5.70572 5.75614 5.79958 5.81117 5.87224 6.01684 6.02990 6.18265 6.21509 6.36257 6.36750 6.42752 6.49350 6.59173 6.64358 6.68977 6.90343 7.08408 7.47576 7.53597 7.59917 7.75925 7.86493 8.20765 8.25060 9.14857 9.75616 10.43256 11.33666 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.022258 B = 0.002580 C = 0.002484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1257.660107 B =10849.897933 C =11268.365720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.132 4.132 3 C 0.161 3.839 4 H 0.035 0.965 5 C 0.136 3.864 6 H 0.097 0.903 7 N -0.702 5.702 8 C 0.558 3.442 9 O -0.532 6.532 10 C -0.094 4.094 11 C -0.081 4.081 12 C -0.105 4.105 13 C -0.091 4.091 14 C -0.030 4.030 15 C -0.166 4.166 16 C 0.078 3.922 17 N -0.491 5.491 18 C 0.148 3.852 19 C -0.080 4.080 20 C -0.156 4.156 21 C 0.174 3.826 22 N -0.594 5.594 23 C -0.230 4.230 24 H 0.075 0.925 25 C -0.002 4.002 26 N -0.916 5.916 27 Si 0.910 3.090 28 H -0.284 1.284 29 H -0.290 1.290 30 H -0.285 1.285 31 H 0.048 0.952 32 H 0.045 0.955 33 H 0.046 0.954 34 H 0.058 0.942 35 H 0.065 0.935 36 H 0.398 0.602 37 H 0.134 0.866 38 H 0.135 0.865 39 H 0.134 0.866 40 H 0.137 0.863 41 H 0.151 0.849 42 H 0.202 0.798 43 H 0.064 0.936 44 H 0.061 0.939 45 H 0.028 0.972 46 H 0.075 0.925 47 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.220 9.835 -2.183 23.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.172 4.172 3 C 0.053 3.947 4 H 0.053 0.947 5 C 0.032 3.968 6 H 0.115 0.885 7 N -0.352 5.352 8 C 0.345 3.655 9 O -0.411 6.411 10 C -0.099 4.099 11 C -0.100 4.100 12 C -0.125 4.125 13 C -0.109 4.109 14 C -0.035 4.035 15 C -0.186 4.186 16 C -0.066 4.066 17 N -0.199 5.199 18 C -0.022 4.022 19 C -0.083 4.083 20 C -0.196 4.196 21 C 0.049 3.951 22 N -0.318 5.318 23 C -0.358 4.358 24 H 0.092 0.908 25 C -0.200 4.200 26 N -0.562 5.562 27 Si 0.741 3.259 28 H -0.211 1.211 29 H -0.216 1.216 30 H -0.211 1.211 31 H 0.067 0.933 32 H 0.064 0.936 33 H 0.065 0.935 34 H 0.077 0.923 35 H 0.084 0.916 36 H 0.233 0.767 37 H 0.152 0.848 38 H 0.152 0.848 39 H 0.152 0.848 40 H 0.155 0.845 41 H 0.169 0.831 42 H 0.218 0.782 43 H 0.083 0.917 44 H 0.080 0.920 45 H 0.046 0.954 46 H 0.093 0.907 47 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -20.588 9.332 -3.833 22.927 hybrid contribution 0.062 0.060 2.135 2.136 sum -20.527 9.391 -1.699 22.637 Atomic orbital electron populations 1.21775 0.97262 1.00606 1.00856 1.22010 0.93542 0.99090 1.02528 1.21129 0.87274 0.93389 0.92934 0.94749 1.22212 0.83075 0.92399 0.99089 0.88498 1.46018 1.27553 1.51616 1.09964 1.18022 0.82383 0.80235 0.84894 1.90572 1.71993 1.54569 1.24008 1.19997 0.96515 1.00001 0.93379 1.21480 0.96270 0.96017 0.96251 1.20915 0.94799 0.97093 0.99645 1.21146 0.99651 0.98938 0.91148 1.18164 0.94420 0.96464 0.94484 1.21857 1.01331 1.02563 0.92814 1.22333 0.93227 0.94133 0.96857 1.67693 1.06118 1.10235 1.35831 1.24684 0.97802 0.93421 0.86272 1.18873 0.95535 0.98785 0.95110 1.23434 0.96561 0.99039 1.00556 1.21440 0.93082 0.93030 0.87542 1.44511 0.98288 1.68902 1.20137 1.18884 0.89838 1.36501 0.90597 0.90766 1.24908 0.97177 1.00875 0.97001 1.69911 1.10278 1.52761 1.23253 0.86236 0.79356 0.79038 0.81317 1.21081 1.21590 1.21136 0.93325 0.93609 0.93497 0.92279 0.91630 0.76687 0.84808 0.84758 0.84782 0.84501 0.83123 0.78211 0.91689 0.92016 0.95366 0.90681 0.93519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.07 9.61 37.16 0.36 -1.72 16 2 C -0.13 -2.35 5.43 -26.73 -0.15 -2.50 16 3 C 0.16 3.03 2.94 -66.78 -0.20 2.83 16 4 H 0.03 0.63 7.70 -51.93 -0.40 0.23 16 5 C 0.14 2.32 1.99 -66.10 -0.13 2.19 16 6 H 0.10 1.79 7.26 -51.93 -0.38 1.41 16 7 N -0.70 -9.48 4.88 -53.06 -0.26 -9.74 16 8 C 0.56 7.90 7.73 -12.46 -0.10 7.80 16 9 O -0.53 -9.05 13.16 5.29 0.07 -8.99 16 10 C -0.09 -1.12 5.90 -104.66 -0.62 -1.74 16 11 C -0.08 -0.72 9.51 -39.12 -0.37 -1.09 16 12 C -0.11 -0.77 9.93 -39.98 -0.40 -1.17 16 13 C -0.09 -0.70 9.79 -39.47 -0.39 -1.09 16 14 C -0.03 -0.31 5.74 -106.84 -0.61 -0.93 16 15 C -0.17 -1.50 9.88 -39.37 -0.39 -1.89 16 16 C 0.08 0.81 11.07 -17.97 -0.20 0.62 16 17 N -0.49 -6.67 10.30 -13.22 -0.14 -6.81 16 18 C 0.15 2.08 10.49 -17.06 -0.18 1.90 16 19 C -0.08 -1.02 5.76 -106.59 -0.61 -1.63 16 20 C -0.16 -2.93 6.77 -24.59 -0.17 -3.10 16 21 C 0.17 4.09 5.42 -2.53 -0.01 4.07 16 22 N -0.59 -14.18 3.14 -162.35 -0.51 -14.69 16 23 C -0.23 -6.06 9.76 -15.06 -0.15 -6.21 16 24 H 0.07 1.89 7.83 -52.48 -0.41 1.48 16 25 C 0.00 -0.06 5.47 -17.43 -0.10 -0.16 16 26 N -0.92 -26.14 10.56 55.49 0.59 -25.55 16 27 Si 0.91 21.45 29.55 -169.99 -5.02 16.43 16 28 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 29 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 30 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 31 H 0.05 0.69 7.42 -51.93 -0.39 0.30 16 32 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.06 1.13 8.05 -51.93 -0.42 0.72 16 35 H 0.06 1.26 7.90 -51.93 -0.41 0.85 16 36 H 0.40 4.38 6.41 -40.82 -0.26 4.12 16 37 H 0.13 0.91 6.42 -52.49 -0.34 0.57 16 38 H 0.13 0.60 8.06 -52.48 -0.42 0.17 16 39 H 0.13 0.65 8.06 -52.49 -0.42 0.23 16 40 H 0.14 0.78 8.06 -52.48 -0.42 0.36 16 41 H 0.15 1.12 8.06 -52.49 -0.42 0.70 16 42 H 0.20 3.08 4.98 -52.49 -0.26 2.82 16 43 H 0.06 1.19 8.14 -51.92 -0.42 0.77 16 44 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 45 H 0.03 0.73 8.07 -51.93 -0.42 0.31 16 46 H 0.07 1.96 6.90 -51.93 -0.36 1.61 16 47 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 LS Contribution 378.18 15.07 5.70 5.70 Total: -1.00 -31.43 378.18 -10.53 -41.97 By element: Atomic # 1 Polarization: 12.04 SS G_CDS: -6.56 Total: 5.48 kcal Atomic # 6 Polarization: 0.60 SS G_CDS: -4.40 Total: -3.80 kcal Atomic # 7 Polarization: -56.47 SS G_CDS: -0.32 Total: -56.79 kcal Atomic # 8 Polarization: -9.05 SS G_CDS: 0.07 Total: -8.99 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -31.43 -10.53 -41.97 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087781667.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.188 kcal (2) G-P(sol) polarization free energy of solvation -31.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.967 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds