Wall clock time and date at job start Tue Mar 31 2020 22:39:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.46991 * 2 1 4 4 H 1.08998 * 109.99892 * 55.13933 * 3 2 1 5 5 C 1.54322 * 109.87998 * 294.04265 * 3 2 1 6 6 H 1.09004 * 110.72462 * 336.93007 * 5 3 2 7 7 N 1.46497 * 110.72027 * 100.02925 * 5 3 2 8 8 C 1.34777 * 120.00572 * 202.56056 * 7 5 3 9 9 O 1.21590 * 119.99121 * 359.97438 * 8 7 5 10 10 C 1.47562 * 120.00587 * 179.97438 * 8 7 5 11 11 C 1.38706 * 120.43046 * 353.97846 * 10 8 7 12 12 C 1.39004 * 120.74699 * 180.02562 * 11 10 8 13 13 C 1.36336 * 121.19304 * 0.02562 * 12 11 10 14 14 C 1.40355 * 119.93234 * 359.97438 * 13 12 11 15 15 C 1.40675 * 122.10539 * 179.97438 * 14 13 12 16 16 C 1.36263 * 118.66989 * 180.02562 * 15 14 13 17 17 N 1.32509 * 121.83638 * 0.02562 * 16 15 14 18 18 C 1.31314 * 122.72315 * 0.02562 * 17 16 15 19 19 C 1.40136 * 119.91483 * 359.97438 * 18 17 16 20 20 C 1.55158 * 103.10060 * 218.47927 * 5 3 2 21 21 C 1.54899 * 101.58386 * 35.41598 * 20 5 3 22 22 N 1.47327 * 110.06195 * 176.31417 * 3 2 1 23 23 C 1.36932 * 125.61144 * 298.24157 * 22 3 2 24 24 H 1.08006 * 120.00623 * 345.55347 * 23 22 3 25 25 C 1.38819 * 119.99726 * 165.55926 * 23 22 3 26 26 N 1.31615 * 119.99880 * 359.97438 * 25 23 22 27 27 Si 1.86794 * 119.99975 * 180.02562 * 25 23 22 28 28 H 1.48496 * 109.47386 * 59.99668 * 27 25 23 29 29 H 1.48502 * 109.47027 * 179.97438 * 27 25 23 30 30 H 1.48502 * 109.47180 * 299.99584 * 27 25 23 31 31 H 1.08996 * 109.47528 * 65.30659 * 1 2 3 32 32 H 1.08999 * 109.46812 * 185.30743 * 1 2 3 33 33 H 1.09002 * 109.46764 * 305.30441 * 1 2 3 34 34 H 1.08994 * 109.47109 * 240.00084 * 2 1 3 35 35 H 1.08999 * 109.47606 * 119.99440 * 2 1 3 36 36 H 0.97006 * 120.00114 * 22.55251 * 7 5 3 37 37 H 1.07994 * 119.62727 * 359.97438 * 11 10 8 38 38 H 1.08005 * 119.39757 * 180.02562 * 12 11 10 39 39 H 1.07998 * 120.03487 * 180.02562 * 13 12 11 40 40 H 1.08004 * 120.66656 * 0.04509 * 15 14 13 41 41 H 1.07999 * 119.08225 * 180.02562 * 16 15 14 42 42 H 1.08003 * 120.04577 * 179.72608 * 18 17 16 43 43 H 1.09007 * 111.00250 * 153.49320 * 20 5 3 44 44 H 1.08999 * 111.00344 * 277.29996 * 20 5 3 45 45 H 1.09000 * 110.36794 * 81.82798 * 21 20 5 46 46 H 1.09001 * 110.37450 * 204.15256 * 21 20 5 47 47 H 0.97003 * 120.00119 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6122 1.9892 0.8404 5 6 1.6574 2.1344 -1.3254 6 1 1.4892 1.3974 -2.1107 7 7 0.4731 2.9780 -1.1467 8 6 -0.2907 3.3012 -2.2090 9 8 0.0035 2.8927 -3.3158 10 6 -1.4839 4.1504 -2.0289 11 6 -1.8989 4.5185 -0.7576 12 6 -3.0222 5.3178 -0.5804 13 6 -3.7478 5.7624 -1.6456 14 6 -3.3630 5.4136 -2.9496 15 6 -4.0782 5.8462 -4.0811 16 6 -3.6426 5.4654 -5.3148 17 7 -2.5704 4.7031 -5.4729 18 6 -1.8569 4.2630 -4.4621 19 6 -2.2211 4.5984 -3.1511 20 6 2.9052 3.0001 -1.6431 21 6 4.0513 2.0956 -1.1257 22 7 3.5105 1.4587 0.0890 23 6 4.2519 0.9619 1.1274 24 1 3.7750 0.7262 2.0674 25 6 5.6167 0.7613 0.9721 26 7 6.1979 1.0482 -0.1734 27 14 6.6282 0.0828 2.3884 28 1 6.1100 -1.2554 2.7703 29 1 8.0478 -0.0376 1.9697 30 1 6.5307 1.0016 3.5510 31 1 -0.3634 0.4293 -0.9336 32 1 -0.3633 -1.0233 0.0951 33 1 -0.3633 0.5939 0.8387 34 1 1.8933 -0.5138 -0.8899 35 1 1.8934 -0.5137 0.8900 36 1 0.2386 3.3041 -0.2637 37 1 -1.3435 4.1795 0.1043 38 1 -3.3257 5.5917 0.4194 39 1 -4.6172 6.3829 -1.4863 40 1 -4.9548 6.4680 -3.9741 41 1 -4.1864 5.7941 -6.1880 42 1 -0.9928 3.6402 -4.6406 43 1 2.9978 3.1733 -2.7153 44 1 2.8751 3.9437 -1.0983 45 1 4.3037 1.3401 -1.8697 46 1 4.9276 2.6959 -0.8810 47 1 7.1515 0.9076 -0.2821 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001087781667.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:39:09 Heat of formation + Delta-G solvation = 28.214974 kcal Electronic energy + Delta-G solvation = -29231.649441 eV Core-core repulsion = 25379.105163 eV Total energy + Delta-G solvation = -3852.544278 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.11289 -40.82200 -39.27406 -38.15886 -35.72202 -34.39921 -33.94258 -33.44041 -32.15594 -31.20258 -30.34486 -28.12660 -26.51367 -25.54815 -24.48022 -24.39980 -23.40195 -22.22261 -21.73233 -21.09158 -19.04483 -18.77715 -18.65850 -17.80778 -17.25190 -17.12088 -16.67736 -16.23075 -16.03604 -15.72961 -15.58792 -15.42962 -15.01356 -14.92080 -14.60776 -14.42951 -14.17031 -13.83670 -13.64900 -13.54291 -13.25551 -13.05992 -12.98914 -12.86933 -12.68369 -12.62294 -12.48689 -12.21494 -12.05763 -11.99622 -11.89314 -11.56618 -11.36905 -11.16584 -10.88282 -10.65707 -10.36984 -10.15423 -10.08089 -9.07626 -8.82564 -7.84094 -5.22164 -0.89367 -0.09983 0.59810 1.47985 1.50754 1.56814 1.73908 1.98529 2.24211 2.52238 3.10202 3.35162 3.44349 3.53790 3.64598 3.73402 3.77386 3.84783 3.87228 3.90871 3.97670 4.19271 4.22170 4.36932 4.41460 4.41727 4.58195 4.62148 4.65468 4.72983 4.75554 4.82551 4.85875 4.92185 5.02174 5.06630 5.16880 5.20789 5.22456 5.31300 5.36723 5.46347 5.49924 5.57984 5.65361 5.69631 5.72639 5.81267 6.23985 6.48445 7.02244 7.09745 7.17845 7.77559 8.44775 9.26931 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.022258 B = 0.002580 C = 0.002484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1257.660107 B =10849.897933 C =11268.365720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.126 4.126 3 C 0.159 3.841 4 H 0.058 0.942 5 C 0.157 3.843 6 H 0.079 0.921 7 N -0.691 5.691 8 C 0.559 3.441 9 O -0.570 6.570 10 C -0.129 4.129 11 C -0.058 4.058 12 C -0.107 4.107 13 C -0.073 4.073 14 C -0.051 4.051 15 C -0.142 4.142 16 C 0.050 3.950 17 N -0.516 5.516 18 C 0.111 3.889 19 C -0.093 4.093 20 C -0.142 4.142 21 C 0.183 3.817 22 N -0.612 5.612 23 C -0.232 4.232 24 H 0.084 0.916 25 C -0.064 4.064 26 N -0.950 5.950 27 Si 0.975 3.025 28 H -0.278 1.278 29 H -0.299 1.299 30 H -0.274 1.274 31 H 0.046 0.954 32 H 0.057 0.943 33 H 0.070 0.930 34 H 0.033 0.967 35 H 0.051 0.949 36 H 0.413 0.587 37 H 0.158 0.842 38 H 0.175 0.825 39 H 0.174 0.826 40 H 0.180 0.820 41 H 0.176 0.824 42 H 0.174 0.826 43 H 0.065 0.935 44 H 0.074 0.926 45 H -0.008 1.008 46 H 0.041 0.959 47 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.468 11.873 0.810 28.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.166 4.166 3 C 0.053 3.947 4 H 0.075 0.925 5 C 0.051 3.949 6 H 0.097 0.903 7 N -0.342 5.342 8 C 0.348 3.652 9 O -0.451 6.451 10 C -0.134 4.134 11 C -0.077 4.077 12 C -0.126 4.126 13 C -0.090 4.090 14 C -0.056 4.056 15 C -0.161 4.161 16 C -0.093 4.093 17 N -0.225 5.225 18 C -0.058 4.058 19 C -0.096 4.096 20 C -0.181 4.181 21 C 0.057 3.943 22 N -0.337 5.337 23 C -0.361 4.361 24 H 0.102 0.898 25 C -0.257 4.257 26 N -0.599 5.599 27 Si 0.803 3.197 28 H -0.204 1.204 29 H -0.226 1.226 30 H -0.200 1.200 31 H 0.065 0.935 32 H 0.076 0.924 33 H 0.089 0.911 34 H 0.052 0.948 35 H 0.069 0.931 36 H 0.252 0.748 37 H 0.175 0.825 38 H 0.193 0.807 39 H 0.192 0.808 40 H 0.197 0.803 41 H 0.194 0.806 42 H 0.190 0.810 43 H 0.083 0.917 44 H 0.093 0.907 45 H 0.010 0.990 46 H 0.060 0.940 47 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -24.891 11.378 -0.805 27.380 hybrid contribution 1.225 -0.488 1.210 1.790 sum -23.666 10.890 0.405 26.054 Atomic orbital electron populations 1.21658 0.93792 1.01993 1.01783 1.21899 0.96487 0.97633 1.00589 1.21314 0.84480 0.94534 0.94387 0.92463 1.21695 0.83729 0.91908 0.97572 0.90311 1.45704 1.26305 1.51261 1.10885 1.18468 0.82839 0.79802 0.84108 1.90582 1.73038 1.55930 1.25544 1.19741 0.96587 1.02304 0.94774 1.21881 0.96250 0.94187 0.95387 1.21383 0.93663 0.95992 1.01519 1.21642 1.00137 0.97618 0.89635 1.18546 0.93980 0.96621 0.96502 1.22323 1.01401 1.00788 0.91605 1.22808 0.93005 0.94616 0.98915 1.67564 1.07374 1.11096 1.36453 1.24289 0.98361 0.95410 0.87780 1.18965 0.96737 0.99511 0.94398 1.23235 0.95653 0.98774 1.00483 1.21120 0.93784 0.92376 0.87045 1.44747 1.00580 1.68919 1.19488 1.19280 0.90232 1.35015 0.91536 0.89785 1.25716 0.98548 1.02079 0.99354 1.70135 1.09841 1.54591 1.25299 0.85212 0.77136 0.78629 0.78714 1.20394 1.22593 1.19978 0.93463 0.92369 0.91083 0.94768 0.93065 0.74809 0.82459 0.80747 0.80823 0.80265 0.80649 0.80966 0.91674 0.90721 0.98978 0.94010 0.94439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.51 9.61 71.98 0.69 -2.82 16 2 C -0.13 -4.48 5.43 30.60 0.17 -4.31 16 3 C 0.16 5.95 2.94 45.28 0.13 6.08 16 4 H 0.06 1.92 7.70 -2.39 -0.02 1.90 16 5 C 0.16 5.38 1.99 46.18 0.09 5.48 16 6 H 0.08 3.05 7.26 -2.38 -0.02 3.03 16 7 N -0.69 -17.89 4.88 -440.04 -2.15 -20.04 16 8 C 0.56 15.91 7.73 86.70 0.67 16.58 16 9 O -0.57 -20.68 13.16 -4.00 -0.05 -20.74 16 10 C -0.13 -2.92 5.90 -19.89 -0.12 -3.04 16 11 C -0.06 -0.80 9.51 22.57 0.21 -0.59 16 12 C -0.11 -0.94 9.93 22.01 0.22 -0.72 16 13 C -0.07 -0.72 9.79 22.34 0.22 -0.51 16 14 C -0.05 -0.91 5.74 -21.30 -0.12 -1.03 16 15 C -0.14 -2.11 9.88 22.40 0.22 -1.88 16 16 C 0.05 0.99 11.07 84.13 0.93 1.92 16 17 N -0.52 -14.66 10.30 -195.72 -2.02 -16.68 16 18 C 0.11 3.34 10.49 85.23 0.89 4.23 16 19 C -0.09 -2.32 5.76 -21.14 -0.12 -2.44 16 20 C -0.14 -5.51 6.77 31.98 0.22 -5.29 16 21 C 0.18 9.06 5.42 86.85 0.47 9.54 16 22 N -0.61 -29.97 3.14 -667.54 -2.10 -32.06 16 23 C -0.23 -12.37 9.76 84.04 0.82 -11.55 16 24 H 0.08 4.23 7.83 -2.91 -0.02 4.21 16 25 C -0.06 -3.55 5.47 84.86 0.46 -3.08 16 26 N -0.95 -56.91 10.56 21.65 0.23 -56.68 16 27 Si 0.97 44.88 29.55 68.60 2.03 46.90 16 28 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 29 H -0.30 -14.12 7.11 99.48 0.71 -13.41 16 30 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 31 H 0.05 1.26 7.42 -2.39 -0.02 1.24 16 32 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 33 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 34 H 0.03 1.35 8.05 -2.39 -0.02 1.33 16 35 H 0.05 1.95 7.90 -2.39 -0.02 1.93 16 36 H 0.41 7.90 6.41 -92.70 -0.59 7.31 16 37 H 0.16 1.34 6.42 -2.91 -0.02 1.32 16 38 H 0.18 0.24 8.06 -2.91 -0.02 0.21 16 39 H 0.17 0.38 8.06 -2.91 -0.02 0.36 16 40 H 0.18 1.04 8.06 -2.91 -0.02 1.01 16 41 H 0.18 2.33 8.06 -2.91 -0.02 2.31 16 42 H 0.17 6.00 4.98 -2.93 -0.01 5.99 16 43 H 0.06 2.52 8.14 -2.38 -0.02 2.50 16 44 H 0.07 2.70 8.14 -2.39 -0.02 2.68 16 45 H -0.01 -0.44 8.07 -2.39 -0.02 -0.46 16 46 H 0.04 2.32 6.90 -2.39 -0.02 2.31 16 47 H 0.25 14.49 8.31 -92.71 -0.77 13.72 16 Total: -1.00 -75.73 378.18 2.41 -73.32 By element: Atomic # 1 Polarization: 19.02 SS G_CDS: 0.40 Total: 19.42 kcal Atomic # 6 Polarization: 0.49 SS G_CDS: 6.06 Total: 6.56 kcal Atomic # 7 Polarization: -119.43 SS G_CDS: -6.03 Total: -125.46 kcal Atomic # 8 Polarization: -20.68 SS G_CDS: -0.05 Total: -20.74 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 2.03 Total: 46.90 kcal Total: -75.73 2.41 -73.32 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087781667.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.538 kcal (2) G-P(sol) polarization free energy of solvation -75.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.323 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds