Wall clock time and date at job start Tue Mar 31 2020 22:39:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47057 * 2 1 4 4 H 1.09000 * 109.99916 * 305.73102 * 3 2 1 5 5 C 1.54340 * 109.99273 * 184.69906 * 3 2 1 6 6 H 1.09003 * 110.50790 * 336.97611 * 5 3 2 7 7 N 1.46492 * 110.85044 * 100.19627 * 5 3 2 8 8 C 1.34784 * 120.00206 * 200.14768 * 7 5 3 9 9 O 1.21547 * 119.99502 * 359.97438 * 8 7 5 10 10 C 1.47883 * 120.00326 * 180.02562 * 8 7 5 11 11 C 1.40600 * 119.73106 * 359.72199 * 10 8 7 12 12 C 1.35848 * 120.95300 * 179.71278 * 11 10 8 13 13 C 1.40495 * 119.87865 * 0.56657 * 12 11 10 14 14 C 1.40486 * 121.84100 * 179.69909 * 13 12 11 15 15 N 1.31211 * 119.93735 * 180.02562 * 14 13 12 16 16 C 1.32558 * 122.80749 * 0.02562 * 15 14 13 17 17 C 1.36221 * 121.84465 * 359.97438 * 16 15 14 18 18 C 1.40763 * 118.67397 * 359.97438 * 17 16 15 19 19 C 1.38524 * 119.72958 * 180.02562 * 10 8 7 20 20 C 1.55154 * 103.01909 * 218.66645 * 5 3 2 21 21 C 1.54915 * 101.58149 * 35.30574 * 20 5 3 22 22 N 1.47013 * 109.88115 * 66.83036 * 3 2 1 23 23 C 1.36939 * 125.65006 * 298.38988 * 22 3 2 24 24 H 1.07998 * 120.00219 * 325.76779 * 23 22 3 25 25 C 1.38811 * 119.99832 * 145.76486 * 23 22 3 26 26 N 1.31621 * 120.00421 * 339.05074 * 25 23 22 27 27 Si 1.86794 * 120.00074 * 159.04938 * 25 23 22 28 28 H 1.48496 * 109.47774 * 180.02562 * 27 25 23 29 29 H 1.48501 * 109.47174 * 300.00422 * 27 25 23 30 30 H 1.48505 * 109.47224 * 59.99674 * 27 25 23 31 31 H 1.09008 * 109.47223 * 51.18114 * 1 2 3 32 32 H 1.09004 * 109.47139 * 171.17725 * 1 2 3 33 33 H 1.08992 * 109.47208 * 291.18083 * 1 2 3 34 34 H 1.09008 * 109.46903 * 240.00295 * 2 1 3 35 35 H 1.08999 * 109.47326 * 120.00318 * 2 1 3 36 36 H 0.96998 * 120.00285 * 20.14854 * 7 5 3 37 37 H 1.08007 * 119.52328 * 0.02562 * 11 10 8 38 38 H 1.07998 * 120.05959 * 180.28565 * 12 11 10 39 39 H 1.07995 * 120.02801 * 0.04353 * 14 13 12 40 40 H 1.08003 * 119.07700 * 179.97438 * 16 15 14 41 41 H 1.07999 * 120.66321 * 180.02562 * 17 16 15 42 42 H 1.08002 * 120.36846 * 359.96661 * 19 10 8 43 43 H 1.08993 * 111.00570 * 277.22644 * 20 5 3 44 44 H 1.09004 * 111.03140 * 153.39091 * 20 5 3 45 45 H 1.09002 * 110.36505 * 204.14984 * 21 20 5 46 46 H 1.09001 * 110.46109 * 81.87990 * 21 20 5 47 47 H 0.97003 * 119.99485 * 353.68314 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6003 1.9933 -0.8315 5 6 3.5787 1.4582 -0.1188 6 1 3.9978 0.5119 0.2234 7 7 3.9925 1.7425 -1.4950 8 6 5.2318 1.4106 -1.9083 9 8 6.0060 0.8759 -1.1390 10 6 5.6497 1.6982 -3.2974 11 6 4.7478 2.3126 -4.1839 12 6 5.1076 2.5933 -5.4635 13 6 6.3935 2.2573 -5.9188 14 6 6.8067 2.5228 -7.2350 15 7 8.0165 2.1925 -7.6208 16 6 8.8921 1.6068 -6.8162 17 6 8.5903 1.3066 -5.5222 18 6 7.3106 1.6316 -5.0342 19 6 6.9245 1.3542 -3.7164 20 6 3.9906 2.6157 0.8286 21 6 2.9392 2.4820 1.9584 22 7 1.6938 2.0952 1.2710 23 6 0.4247 2.3040 1.7413 24 1 -0.3790 2.5148 1.0514 25 6 0.1713 2.2446 3.1048 26 7 1.0006 1.6038 3.9011 27 14 -1.3467 3.0740 3.8096 28 1 -1.3870 2.8663 5.2794 29 1 -1.2966 4.5291 3.5171 30 1 -2.5632 2.4868 3.1927 31 1 -0.3634 0.6442 -0.8007 32 1 -0.3634 -1.0155 -0.1576 33 1 -0.3633 0.3713 0.9582 34 1 1.8933 -0.5138 -0.8901 35 1 1.8934 -0.5139 0.8899 36 1 3.3747 2.1696 -2.1088 37 1 3.7564 2.5697 -3.8412 38 1 4.4048 3.0698 -6.1309 39 1 6.1292 2.9985 -7.9285 40 1 9.8723 1.3607 -7.1972 41 1 9.3186 0.8296 -4.8831 42 1 7.6136 0.8783 -3.0344 43 1 3.9053 3.5799 0.3275 44 1 4.9993 2.4659 1.2138 45 1 2.8095 3.4354 2.4706 46 1 3.2374 1.7092 2.6669 47 1 1.7378 1.0964 3.5266 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087784144.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:39:01 Heat of formation + Delta-G solvation = 34.689481 kcal Electronic energy + Delta-G solvation = -28674.335913 eV Core-core repulsion = 24822.072391 eV Total energy + Delta-G solvation = -3852.263523 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.25959 -39.91060 -38.13876 -37.12898 -34.41813 -33.37862 -32.60083 -32.27268 -31.37722 -30.00606 -28.66949 -27.06250 -25.31144 -24.18434 -24.14143 -22.67177 -21.90173 -21.20389 -20.37130 -19.74532 -18.44357 -17.97373 -17.35576 -16.98733 -16.43116 -16.03737 -15.32247 -15.05486 -14.69238 -14.51310 -14.36650 -14.04205 -14.02536 -13.86890 -13.63532 -13.22123 -13.19405 -12.95787 -12.74389 -12.42167 -12.39966 -12.10272 -11.64415 -11.48528 -11.11268 -10.97356 -10.79087 -10.64296 -10.53292 -10.30804 -10.18525 -10.09873 -10.01781 -9.90559 -9.81402 -9.49329 -9.42622 -8.83570 -8.48988 -8.43667 -6.89481 -6.05186 -3.36283 -0.15286 0.30999 1.46760 2.24798 3.08700 3.17503 3.45033 3.48384 3.66218 3.72428 3.99998 4.11698 4.29365 4.36108 4.47988 4.54655 4.61620 4.76935 4.82991 5.07487 5.19866 5.27584 5.28290 5.31590 5.35525 5.40051 5.53007 5.63384 5.65718 5.87021 5.89807 5.90949 5.95493 6.02392 6.13064 6.20022 6.25289 6.31735 6.35570 6.46662 6.55627 6.64657 6.75322 6.89271 7.01661 7.07897 7.33427 7.51956 7.55439 7.90772 8.17822 8.47850 8.97245 9.73805 10.35673 11.17875 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.026424 B = 0.002228 C = 0.002176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1059.381350 B =12564.440418 C =12862.392148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.121 4.121 3 C 0.155 3.845 4 H 0.036 0.964 5 C 0.134 3.866 6 H 0.094 0.906 7 N -0.707 5.707 8 C 0.553 3.447 9 O -0.535 6.535 10 C -0.107 4.107 11 C -0.093 4.093 12 C -0.090 4.090 13 C -0.099 4.099 14 C 0.143 3.857 15 N -0.485 5.485 16 C 0.071 3.929 17 C -0.144 4.144 18 C -0.034 4.034 19 C -0.045 4.045 20 C -0.143 4.143 21 C 0.141 3.859 22 N -0.588 5.588 23 C -0.325 4.325 24 H 0.057 0.943 25 C -0.020 4.020 26 N -0.911 5.911 27 Si 1.067 2.933 28 H -0.285 1.285 29 H -0.293 1.293 30 H -0.291 1.291 31 H 0.037 0.963 32 H 0.028 0.972 33 H 0.091 0.909 34 H 0.037 0.963 35 H 0.056 0.944 36 H 0.398 0.602 37 H 0.133 0.867 38 H 0.140 0.860 39 H 0.166 0.834 40 H 0.155 0.845 41 H 0.142 0.858 42 H 0.147 0.853 43 H 0.065 0.935 44 H 0.066 0.934 45 H 0.049 0.951 46 H 0.031 0.969 47 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.616 1.120 -20.437 23.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.161 4.161 3 C 0.048 3.952 4 H 0.053 0.947 5 C 0.030 3.970 6 H 0.112 0.888 7 N -0.357 5.357 8 C 0.339 3.661 9 O -0.413 6.413 10 C -0.112 4.112 11 C -0.112 4.112 12 C -0.110 4.110 13 C -0.101 4.101 14 C -0.028 4.028 15 N -0.193 5.193 16 C -0.072 4.072 17 C -0.163 4.163 18 C -0.039 4.039 19 C -0.064 4.064 20 C -0.183 4.183 21 C 0.015 3.985 22 N -0.314 5.314 23 C -0.453 4.453 24 H 0.075 0.925 25 C -0.224 4.224 26 N -0.549 5.549 27 Si 0.897 3.103 28 H -0.211 1.211 29 H -0.220 1.220 30 H -0.218 1.218 31 H 0.056 0.944 32 H 0.048 0.952 33 H 0.110 0.890 34 H 0.056 0.944 35 H 0.075 0.925 36 H 0.234 0.766 37 H 0.151 0.849 38 H 0.158 0.842 39 H 0.183 0.817 40 H 0.172 0.828 41 H 0.159 0.841 42 H 0.165 0.835 43 H 0.084 0.916 44 H 0.085 0.915 45 H 0.067 0.933 46 H 0.049 0.951 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 10.658 1.229 -19.223 22.014 hybrid contribution 0.222 -0.437 -0.871 0.999 sum 10.880 0.792 -20.094 22.864 Atomic orbital electron populations 1.21847 0.95566 0.98759 1.04212 1.21867 0.97125 0.97474 0.99639 1.21244 0.89459 0.92468 0.92033 0.94678 1.22151 0.96055 0.99193 0.79604 0.88808 1.45993 1.14119 1.61426 1.14211 1.18204 0.82268 0.78847 0.86739 1.90782 1.52235 1.42784 1.55471 1.20122 0.95211 1.01523 0.94308 1.21035 0.99387 0.97263 0.93506 1.20889 0.94816 0.99221 0.96065 1.19166 0.95242 1.00103 0.95595 1.23262 0.92616 0.94430 0.92518 1.67392 1.03122 1.10722 1.38037 1.22207 0.98864 0.95671 0.90408 1.22016 0.96006 1.00770 0.97534 1.18151 0.94195 0.97770 0.93812 1.21450 0.95339 0.95607 0.94013 1.23179 0.99445 0.97699 0.97967 1.21600 0.85485 0.98518 0.92905 1.44428 1.01873 1.65701 1.19402 1.19513 0.84870 1.47810 0.93145 0.92523 1.26008 1.03841 0.98777 0.93797 1.70760 1.17552 1.28512 1.38121 0.83494 0.74700 0.75886 0.76261 1.21079 1.21979 1.21839 0.94361 0.95250 0.89005 0.94405 0.92504 0.76629 0.84939 0.84199 0.81728 0.82792 0.84052 0.83513 0.91638 0.91542 0.93294 0.95085 0.91768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.84 9.15 37.16 0.34 -2.50 16 2 C -0.12 -2.32 5.45 -26.73 -0.15 -2.46 16 3 C 0.16 3.00 2.99 -66.95 -0.20 2.80 16 4 H 0.04 0.66 7.68 -51.93 -0.40 0.27 16 5 C 0.13 2.33 2.76 -66.09 -0.18 2.15 16 6 H 0.09 1.78 7.40 -51.93 -0.38 1.40 16 7 N -0.71 -9.88 5.15 -52.95 -0.27 -10.15 16 8 C 0.55 8.01 7.77 -12.31 -0.10 7.91 16 9 O -0.53 -9.60 16.03 5.32 0.09 -9.51 16 10 C -0.11 -1.23 5.87 -104.95 -0.62 -1.84 16 11 C -0.09 -0.83 9.44 -39.55 -0.37 -1.20 16 12 C -0.09 -0.68 9.77 -39.59 -0.39 -1.07 16 13 C -0.10 -0.88 5.75 -106.78 -0.61 -1.49 16 14 C 0.14 1.16 11.04 -16.97 -0.19 0.97 16 15 N -0.48 -4.62 10.29 -13.15 -0.14 -4.76 16 16 C 0.07 0.59 11.07 -17.96 -0.20 0.39 16 17 C -0.14 -1.19 9.88 -39.35 -0.39 -1.57 16 18 C -0.03 -0.34 5.74 -106.83 -0.61 -0.95 16 19 C -0.05 -0.49 9.38 -38.78 -0.36 -0.85 16 20 C -0.14 -2.63 6.77 -24.58 -0.17 -2.79 16 21 C 0.14 3.15 5.81 -2.53 -0.01 3.13 16 22 N -0.59 -13.77 2.82 -162.57 -0.46 -14.23 16 23 C -0.32 -8.42 7.01 -15.06 -0.11 -8.53 16 24 H 0.06 1.48 7.66 -52.49 -0.40 1.08 16 25 C -0.02 -0.55 5.23 -17.43 -0.09 -0.64 16 26 N -0.91 -26.46 13.14 55.49 0.73 -25.73 16 27 Si 1.07 24.37 29.97 -169.99 -5.09 19.27 16 28 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 29 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 30 H -0.29 -6.34 7.11 56.52 0.40 -5.94 16 31 H 0.04 0.69 8.12 -51.92 -0.42 0.27 16 32 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.09 2.10 5.69 -51.93 -0.30 1.81 16 34 H 0.04 0.64 8.14 -51.92 -0.42 0.21 16 35 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 36 H 0.40 4.53 6.30 -40.82 -0.26 4.27 16 37 H 0.13 0.93 6.34 -52.48 -0.33 0.59 16 38 H 0.14 0.63 8.06 -52.49 -0.42 0.21 16 39 H 0.17 0.81 8.06 -52.49 -0.42 0.39 16 40 H 0.15 0.87 8.06 -52.48 -0.42 0.44 16 41 H 0.14 0.85 8.06 -52.49 -0.42 0.42 16 42 H 0.15 1.57 7.62 -52.49 -0.40 1.17 16 43 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 44 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 45 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 46 H 0.03 0.76 6.68 -51.93 -0.35 0.41 16 47 H 0.27 7.93 6.19 -40.82 -0.25 7.68 16 LS Contribution 380.35 15.07 5.73 5.73 Total: -1.00 -32.18 380.35 -10.33 -42.51 By element: Atomic # 1 Polarization: 11.92 SS G_CDS: -6.51 Total: 5.41 kcal Atomic # 6 Polarization: -4.14 SS G_CDS: -4.40 Total: -8.55 kcal Atomic # 7 Polarization: -54.72 SS G_CDS: -0.14 Total: -54.86 kcal Atomic # 8 Polarization: -9.60 SS G_CDS: 0.09 Total: -9.51 kcal Atomic # 14 Polarization: 24.37 SS G_CDS: -5.09 Total: 19.27 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -32.18 -10.33 -42.51 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087784144.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.202 kcal (2) G-P(sol) polarization free energy of solvation -32.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.513 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds