Wall clock time and date at job start Tue Mar 31 2020 22:39:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47057 * 2 1 4 4 H 1.09000 * 109.99916 * 305.73102 * 3 2 1 5 5 C 1.54340 * 109.99273 * 184.69906 * 3 2 1 6 6 H 1.09003 * 110.50790 * 336.97611 * 5 3 2 7 7 N 1.46492 * 110.85044 * 100.19627 * 5 3 2 8 8 C 1.34784 * 120.00206 * 200.14768 * 7 5 3 9 9 O 1.21547 * 119.99502 * 359.97438 * 8 7 5 10 10 C 1.47883 * 120.00326 * 180.02562 * 8 7 5 11 11 C 1.40600 * 119.73106 * 359.72199 * 10 8 7 12 12 C 1.35848 * 120.95300 * 179.71278 * 11 10 8 13 13 C 1.40495 * 119.87865 * 0.56657 * 12 11 10 14 14 C 1.40486 * 121.84100 * 179.69909 * 13 12 11 15 15 N 1.31211 * 119.93735 * 180.02562 * 14 13 12 16 16 C 1.32558 * 122.80749 * 0.02562 * 15 14 13 17 17 C 1.36221 * 121.84465 * 359.97438 * 16 15 14 18 18 C 1.40763 * 118.67397 * 359.97438 * 17 16 15 19 19 C 1.38524 * 119.72958 * 180.02562 * 10 8 7 20 20 C 1.55154 * 103.01909 * 218.66645 * 5 3 2 21 21 C 1.54915 * 101.58149 * 35.30574 * 20 5 3 22 22 N 1.47013 * 109.88115 * 66.83036 * 3 2 1 23 23 C 1.36939 * 125.65006 * 298.38988 * 22 3 2 24 24 H 1.07998 * 120.00219 * 325.76779 * 23 22 3 25 25 C 1.38811 * 119.99832 * 145.76486 * 23 22 3 26 26 N 1.31621 * 120.00421 * 339.05074 * 25 23 22 27 27 Si 1.86794 * 120.00074 * 159.04938 * 25 23 22 28 28 H 1.48496 * 109.47774 * 180.02562 * 27 25 23 29 29 H 1.48501 * 109.47174 * 300.00422 * 27 25 23 30 30 H 1.48505 * 109.47224 * 59.99674 * 27 25 23 31 31 H 1.09008 * 109.47223 * 51.18114 * 1 2 3 32 32 H 1.09004 * 109.47139 * 171.17725 * 1 2 3 33 33 H 1.08992 * 109.47208 * 291.18083 * 1 2 3 34 34 H 1.09008 * 109.46903 * 240.00295 * 2 1 3 35 35 H 1.08999 * 109.47326 * 120.00318 * 2 1 3 36 36 H 0.96998 * 120.00285 * 20.14854 * 7 5 3 37 37 H 1.08007 * 119.52328 * 0.02562 * 11 10 8 38 38 H 1.07998 * 120.05959 * 180.28565 * 12 11 10 39 39 H 1.07995 * 120.02801 * 0.04353 * 14 13 12 40 40 H 1.08003 * 119.07700 * 179.97438 * 16 15 14 41 41 H 1.07999 * 120.66321 * 180.02562 * 17 16 15 42 42 H 1.08002 * 120.36846 * 359.96661 * 19 10 8 43 43 H 1.08993 * 111.00570 * 277.22644 * 20 5 3 44 44 H 1.09004 * 111.03140 * 153.39091 * 20 5 3 45 45 H 1.09002 * 110.36505 * 204.14984 * 21 20 5 46 46 H 1.09001 * 110.46109 * 81.87990 * 21 20 5 47 47 H 0.97003 * 119.99485 * 353.68314 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6003 1.9933 -0.8315 5 6 3.5787 1.4582 -0.1188 6 1 3.9978 0.5119 0.2234 7 7 3.9925 1.7425 -1.4950 8 6 5.2318 1.4106 -1.9083 9 8 6.0060 0.8759 -1.1390 10 6 5.6497 1.6982 -3.2974 11 6 4.7478 2.3126 -4.1839 12 6 5.1076 2.5933 -5.4635 13 6 6.3935 2.2573 -5.9188 14 6 6.8067 2.5228 -7.2350 15 7 8.0165 2.1925 -7.6208 16 6 8.8921 1.6068 -6.8162 17 6 8.5903 1.3066 -5.5222 18 6 7.3106 1.6316 -5.0342 19 6 6.9245 1.3542 -3.7164 20 6 3.9906 2.6157 0.8286 21 6 2.9392 2.4820 1.9584 22 7 1.6938 2.0952 1.2710 23 6 0.4247 2.3040 1.7413 24 1 -0.3790 2.5148 1.0514 25 6 0.1713 2.2446 3.1048 26 7 1.0006 1.6038 3.9011 27 14 -1.3467 3.0740 3.8096 28 1 -1.3870 2.8663 5.2794 29 1 -1.2966 4.5291 3.5171 30 1 -2.5632 2.4868 3.1927 31 1 -0.3634 0.6442 -0.8007 32 1 -0.3634 -1.0155 -0.1576 33 1 -0.3633 0.3713 0.9582 34 1 1.8933 -0.5138 -0.8901 35 1 1.8934 -0.5139 0.8899 36 1 3.3747 2.1696 -2.1088 37 1 3.7564 2.5697 -3.8412 38 1 4.4048 3.0698 -6.1309 39 1 6.1292 2.9985 -7.9285 40 1 9.8723 1.3607 -7.1972 41 1 9.3186 0.8296 -4.8831 42 1 7.6136 0.8783 -3.0344 43 1 3.9053 3.5799 0.3275 44 1 4.9993 2.4659 1.2138 45 1 2.8095 3.4354 2.4706 46 1 3.2374 1.7092 2.6669 47 1 1.7378 1.0964 3.5266 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001087784144.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:39:00 Heat of formation + Delta-G solvation = 15.697632 kcal Electronic energy + Delta-G solvation = -28675.159462 eV Core-core repulsion = 24822.072391 eV Total energy + Delta-G solvation = -3853.087071 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.98978 -41.06893 -39.58881 -37.97011 -35.89162 -34.32374 -34.02879 -33.76932 -32.36621 -30.65010 -30.40929 -28.59539 -26.63464 -25.59754 -24.80950 -23.62350 -23.27865 -22.43290 -21.79581 -21.32962 -19.52369 -19.15889 -18.68502 -17.88176 -17.35495 -17.17662 -16.31553 -16.07181 -15.96770 -15.90141 -15.57437 -15.21753 -15.20397 -14.95392 -14.72911 -14.63238 -14.57726 -14.03058 -13.87628 -13.75668 -13.45621 -13.30334 -13.06951 -12.84848 -12.67683 -12.52293 -12.19570 -12.12119 -11.91834 -11.86778 -11.75605 -11.56435 -11.37769 -11.27520 -11.20339 -10.53453 -10.44249 -10.33023 -10.06017 -9.13409 -8.88686 -8.12388 -5.43029 -0.85253 -0.36253 0.79369 1.43400 1.60249 1.67320 1.84940 1.92515 2.28307 2.67188 3.04172 3.27730 3.36473 3.48049 3.51833 3.56441 3.70297 3.74421 3.75770 3.81367 3.98254 4.05782 4.08769 4.26559 4.28128 4.38501 4.44016 4.55596 4.58630 4.63712 4.68063 4.74177 4.85578 4.91750 4.92897 4.98339 5.02322 5.04752 5.14020 5.18650 5.21573 5.24472 5.31166 5.51880 5.60275 5.67050 5.69926 5.89765 6.40732 6.41866 6.95133 6.96456 7.06604 7.72952 8.37853 9.07614 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.026424 B = 0.002228 C = 0.002176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1059.381350 B =12564.440418 C =12862.392148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.118 4.118 3 C 0.155 3.845 4 H 0.056 0.944 5 C 0.150 3.850 6 H 0.075 0.925 7 N -0.695 5.695 8 C 0.555 3.445 9 O -0.577 6.577 10 C -0.118 4.118 11 C -0.101 4.101 12 C -0.073 4.073 13 C -0.109 4.109 14 C 0.146 3.854 15 N -0.508 5.508 16 C 0.066 3.934 17 C -0.152 4.152 18 C -0.050 4.050 19 C -0.056 4.056 20 C -0.128 4.128 21 C 0.144 3.856 22 N -0.605 5.605 23 C -0.312 4.312 24 H 0.059 0.941 25 C -0.076 4.076 26 N -0.947 5.947 27 Si 1.112 2.888 28 H -0.299 1.299 29 H -0.279 1.279 30 H -0.272 1.272 31 H 0.053 0.947 32 H 0.048 0.952 33 H 0.051 0.949 34 H 0.068 0.932 35 H 0.026 0.974 36 H 0.414 0.586 37 H 0.154 0.846 38 H 0.179 0.821 39 H 0.198 0.802 40 H 0.176 0.824 41 H 0.156 0.844 42 H 0.137 0.863 43 H 0.081 0.919 44 H 0.069 0.931 45 H 0.026 0.974 46 H 0.002 0.998 47 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.875 2.247 -24.213 26.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.157 4.157 3 C 0.048 3.952 4 H 0.074 0.926 5 C 0.045 3.955 6 H 0.093 0.907 7 N -0.346 5.346 8 C 0.343 3.657 9 O -0.457 6.457 10 C -0.123 4.123 11 C -0.120 4.120 12 C -0.093 4.093 13 C -0.111 4.111 14 C -0.025 4.025 15 N -0.216 5.216 16 C -0.076 4.076 17 C -0.172 4.172 18 C -0.055 4.055 19 C -0.075 4.075 20 C -0.167 4.167 21 C 0.018 3.982 22 N -0.331 5.331 23 C -0.441 4.441 24 H 0.077 0.923 25 C -0.273 4.273 26 N -0.589 5.589 27 Si 0.937 3.063 28 H -0.225 1.225 29 H -0.205 1.205 30 H -0.198 1.198 31 H 0.073 0.927 32 H 0.067 0.933 33 H 0.070 0.930 34 H 0.086 0.914 35 H 0.045 0.955 36 H 0.253 0.747 37 H 0.172 0.828 38 H 0.197 0.803 39 H 0.215 0.785 40 H 0.193 0.807 41 H 0.174 0.826 42 H 0.155 0.845 43 H 0.099 0.901 44 H 0.088 0.912 45 H 0.045 0.955 46 H 0.020 0.980 47 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 9.906 2.369 -23.068 25.217 hybrid contribution 0.533 -0.810 0.145 0.981 sum 10.439 1.559 -22.923 25.237 Atomic orbital electron populations 1.21726 0.95447 1.00144 1.02422 1.21810 0.97135 0.97176 0.99602 1.21353 0.90808 0.92531 0.90458 0.92649 1.21707 0.94551 0.97915 0.81363 0.90661 1.45728 1.14529 1.61494 1.12879 1.18675 0.81613 0.77648 0.87727 1.90764 1.53348 1.44641 1.56959 1.19941 0.96105 1.03362 0.92872 1.21218 0.99778 0.97293 0.93673 1.21292 0.94615 0.97480 0.95879 1.19457 0.95785 0.99973 0.95921 1.23810 0.92589 0.93481 0.92619 1.67459 1.03954 1.11504 1.38667 1.22590 0.99658 0.95023 0.90296 1.22223 0.95982 1.01000 0.97966 1.18335 0.95252 0.98362 0.93547 1.21441 0.95298 0.96116 0.94622 1.23024 0.98087 0.98923 0.96667 1.21437 0.86637 0.96318 0.93760 1.44635 1.01472 1.66543 1.20429 1.19691 0.85791 1.45544 0.93069 0.92350 1.27239 1.05781 0.99400 0.94918 1.70878 1.18611 1.30932 1.38471 0.82884 0.72675 0.75822 0.74875 1.22514 1.20535 1.19777 0.92745 0.93309 0.92989 0.91373 0.95501 0.74674 0.82842 0.80347 0.78485 0.80719 0.82589 0.84519 0.90069 0.91237 0.95520 0.97973 0.93518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.22 9.15 71.98 0.66 -4.56 16 2 C -0.12 -4.39 5.45 30.59 0.17 -4.22 16 3 C 0.15 5.82 2.99 45.35 0.14 5.95 16 4 H 0.06 1.91 7.68 -2.39 -0.02 1.89 16 5 C 0.15 5.13 2.76 46.19 0.13 5.26 16 6 H 0.08 2.90 7.40 -2.39 -0.02 2.88 16 7 N -0.69 -18.08 5.15 -439.73 -2.27 -20.35 16 8 C 0.55 15.56 7.77 86.80 0.67 16.24 16 9 O -0.58 -20.94 16.03 -3.86 -0.06 -21.00 16 10 C -0.12 -2.54 5.87 -20.08 -0.12 -2.66 16 11 C -0.10 -1.46 9.44 22.29 0.21 -1.25 16 12 C -0.07 -0.81 9.77 22.27 0.22 -0.60 16 13 C -0.11 -1.63 5.75 -21.26 -0.12 -1.75 16 14 C 0.15 1.90 11.04 85.33 0.94 2.84 16 15 N -0.51 -8.47 10.29 -195.51 -2.01 -10.49 16 16 C 0.07 0.98 11.07 84.11 0.93 1.91 16 17 C -0.15 -2.33 9.88 22.42 0.22 -2.11 16 18 C -0.05 -0.91 5.74 -21.29 -0.12 -1.03 16 19 C -0.06 -1.18 9.38 22.79 0.21 -0.97 16 20 C -0.13 -4.66 6.77 31.99 0.22 -4.44 16 21 C 0.14 6.70 5.81 86.86 0.50 7.21 16 22 N -0.60 -28.61 2.82 -668.24 -1.88 -30.49 16 23 C -0.31 -16.26 7.01 84.03 0.59 -15.67 16 24 H 0.06 3.00 7.66 -2.91 -0.02 2.98 16 25 C -0.08 -4.22 5.23 84.86 0.44 -3.77 16 26 N -0.95 -57.39 13.14 21.65 0.28 -57.10 16 27 Si 1.11 49.68 29.97 68.60 2.06 51.74 16 28 H -0.30 -13.91 7.11 99.48 0.71 -13.20 16 29 H -0.28 -11.73 7.11 99.48 0.71 -11.02 16 30 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 31 H 0.05 1.82 8.12 -2.38 -0.02 1.80 16 32 H 0.05 1.60 8.14 -2.38 -0.02 1.58 16 33 H 0.05 2.37 5.69 -2.39 -0.01 2.35 16 34 H 0.07 2.14 8.14 -2.38 -0.02 2.12 16 35 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 36 H 0.41 8.06 6.30 -92.71 -0.58 7.48 16 37 H 0.15 1.48 6.34 -2.91 -0.02 1.46 16 38 H 0.18 0.57 8.06 -2.91 -0.02 0.55 16 39 H 0.20 1.06 8.06 -2.91 -0.02 1.03 16 40 H 0.18 1.63 8.06 -2.91 -0.02 1.61 16 41 H 0.16 1.75 8.06 -2.91 -0.02 1.73 16 42 H 0.14 3.05 7.62 -2.91 -0.02 3.03 16 43 H 0.08 2.72 8.14 -2.39 -0.02 2.70 16 44 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16 45 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 46 H 0.00 0.13 6.68 -2.39 -0.02 0.11 16 47 H 0.25 15.80 6.19 -92.71 -0.57 15.23 16 Total: -1.00 -73.19 380.35 2.61 -70.57 By element: Atomic # 1 Polarization: 20.16 SS G_CDS: 0.61 Total: 20.77 kcal Atomic # 6 Polarization: -9.54 SS G_CDS: 5.89 Total: -3.65 kcal Atomic # 7 Polarization: -112.55 SS G_CDS: -5.88 Total: -118.42 kcal Atomic # 8 Polarization: -20.94 SS G_CDS: -0.06 Total: -21.00 kcal Atomic # 14 Polarization: 49.68 SS G_CDS: 2.06 Total: 51.74 kcal Total: -73.19 2.61 -70.57 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087784144.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.271 kcal (2) G-P(sol) polarization free energy of solvation -73.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.574 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds