Wall clock time and date at job start Tue Mar 31 2020 22:38:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.46699 * 2 1 4 4 H 1.09001 * 109.87378 * 54.13707 * 3 2 1 5 5 C 1.54326 * 110.01361 * 293.03435 * 3 2 1 6 6 H 1.08996 * 110.71580 * 336.68565 * 5 3 2 7 7 N 1.46504 * 110.71925 * 99.77878 * 5 3 2 8 8 C 1.34778 * 119.99777 * 205.00482 * 7 5 3 9 9 O 1.21559 * 119.99814 * 359.97438 * 8 7 5 10 10 C 1.47772 * 119.99758 * 180.02562 * 8 7 5 11 11 C 1.40655 * 119.70077 * 359.97438 * 10 8 7 12 12 C 1.35843 * 120.87587 * 179.97438 * 11 10 8 13 13 C 1.40395 * 119.84720 * 0.02562 * 12 11 10 14 14 C 1.40640 * 121.97471 * 180.02562 * 13 12 11 15 15 C 1.36229 * 118.72580 * 179.97438 * 14 13 12 16 16 N 1.32593 * 121.90052 * 359.97438 * 15 14 13 17 17 C 1.31235 * 122.74332 * 0.02562 * 16 15 14 18 18 C 1.40557 * 119.88628 * 359.97438 * 17 16 15 19 19 C 1.38564 * 119.70027 * 179.72587 * 10 8 7 20 20 C 1.55156 * 102.94354 * 218.32063 * 5 3 2 21 21 C 1.54690 * 101.67521 * 35.33297 * 20 5 3 22 22 N 1.47019 * 109.87998 * 175.14790 * 3 2 1 23 23 C 1.36938 * 125.65288 * 298.47778 * 22 3 2 24 24 H 1.08004 * 119.99493 * 347.83134 * 23 22 3 25 25 C 1.38815 * 120.00343 * 168.10791 * 23 22 3 26 26 N 1.31617 * 119.99568 * 359.97438 * 25 23 22 27 27 Si 1.86797 * 119.99755 * 180.02562 * 25 23 22 28 28 H 1.48506 * 109.47163 * 90.00409 * 27 25 23 29 29 H 1.48497 * 109.46885 * 209.99664 * 27 25 23 30 30 H 1.48498 * 109.47538 * 330.00124 * 27 25 23 31 31 H 1.08996 * 109.47122 * 185.44729 * 1 2 3 32 32 H 1.09000 * 109.47495 * 305.44830 * 1 2 3 33 33 H 1.09005 * 109.47437 * 65.45110 * 1 2 3 34 34 H 1.08994 * 109.47141 * 240.00525 * 2 1 3 35 35 H 1.09001 * 109.46966 * 119.99441 * 2 1 3 36 36 H 0.97000 * 119.99758 * 25.00298 * 7 5 3 37 37 H 1.07997 * 119.56320 * 0.02562 * 11 10 8 38 38 H 1.08003 * 120.07470 * 180.02562 * 12 11 10 39 39 H 1.07996 * 120.64178 * 359.95398 * 14 13 12 40 40 H 1.07996 * 119.04585 * 180.02562 * 15 14 13 41 41 H 1.08003 * 120.05840 * 180.02562 * 17 16 15 42 42 H 1.08000 * 120.34167 * 359.97438 * 19 10 8 43 43 H 1.08991 * 111.00730 * 153.57470 * 20 5 3 44 44 H 1.08998 * 111.00337 * 277.42790 * 20 5 3 45 45 H 1.09001 * 110.39291 * 204.36108 * 21 20 5 46 46 H 1.09005 * 110.23902 * 82.11295 * 21 20 5 47 47 H 0.97004 * 119.99279 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5972 1.9921 0.8308 5 6 1.6810 2.1296 -1.3345 6 1 1.5300 1.3899 -2.1206 7 7 0.4910 2.9703 -1.1810 8 6 -0.2807 3.2476 -2.2506 9 8 0.0109 2.8004 -3.3427 10 6 -1.4806 4.0960 -2.0959 11 6 -1.8118 4.6105 -0.8293 12 6 -2.9090 5.3933 -0.6600 13 6 -3.7277 5.6962 -1.7596 14 6 -4.8735 6.5022 -1.6354 15 6 -5.6202 6.7543 -2.7465 16 7 -5.2965 6.2628 -3.9347 17 6 -4.2429 5.5040 -4.1259 18 6 -3.4050 5.1835 -3.0438 19 6 -2.2665 4.3818 -3.2007 20 6 2.9350 2.9948 -1.6282 21 6 4.0702 2.0954 -1.0848 22 7 3.5054 1.4548 0.1169 23 6 4.2262 0.9587 1.1703 24 1 3.7255 0.6920 2.0893 25 6 5.6012 0.8040 1.0589 26 7 6.2120 1.1337 -0.0594 27 14 6.5843 0.1266 2.4955 28 1 6.6592 -1.3529 2.3903 29 1 7.9560 0.6948 2.4684 30 1 5.9192 0.4991 3.7700 31 1 -0.3633 -1.0230 0.0976 32 1 -0.3634 0.5960 0.8372 33 1 -0.3634 0.4270 -0.9348 34 1 1.8933 -0.5137 -0.8900 35 1 1.8933 -0.5138 0.8901 36 1 0.2586 3.3274 -0.3095 37 1 -1.1850 4.3808 0.0196 38 1 -3.1509 5.7818 0.3182 39 1 -5.1561 6.9132 -0.6775 40 1 -6.5009 7.3730 -2.6572 41 1 -4.0196 5.1272 -5.1131 42 1 -2.0058 3.9883 -4.1721 43 1 3.0489 3.1670 -2.6984 44 1 2.8946 3.9386 -1.0844 45 1 4.9389 2.6983 -0.8205 46 1 4.3411 1.3420 -1.8244 47 1 7.1728 1.0252 -0.1373 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087786344.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:38:57 Heat of formation + Delta-G solvation = 40.011697 kcal Electronic energy + Delta-G solvation = -28737.712090 eV Core-core repulsion = 24885.679356 eV Total energy + Delta-G solvation = -3852.032734 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.22368 -39.84520 -38.00114 -37.05887 -34.18714 -33.32923 -32.85258 -32.02531 -31.30645 -30.07863 -28.98136 -26.75417 -25.17671 -24.29129 -24.11495 -22.67531 -22.17734 -20.98427 -20.27134 -19.83038 -18.25683 -17.99966 -17.13075 -16.79725 -16.00081 -15.86498 -15.39654 -14.96072 -14.80196 -14.44045 -14.36536 -14.17574 -13.98264 -13.89337 -13.79602 -13.53435 -13.16625 -12.72844 -12.38790 -12.27324 -12.03119 -11.94754 -11.69344 -11.61840 -11.17957 -10.91684 -10.87530 -10.66548 -10.57331 -10.48686 -10.35574 -10.11220 -9.97789 -9.81169 -9.69066 -9.66917 -9.49290 -8.73312 -8.61980 -8.42812 -6.86030 -5.77265 -3.13891 -0.11498 0.36341 1.46395 2.31440 3.18676 3.23229 3.36752 3.42107 3.43718 3.76443 4.02367 4.15418 4.30245 4.39033 4.44916 4.58146 4.66253 4.79137 4.84774 5.19613 5.22908 5.31364 5.32325 5.40933 5.47641 5.51048 5.54749 5.60401 5.71598 5.76616 5.81940 5.91848 5.96704 6.02201 6.18945 6.21916 6.25031 6.35004 6.38060 6.43343 6.52078 6.64122 6.69227 6.90660 7.09391 7.49528 7.55658 7.57896 7.63096 7.76646 8.22589 8.28426 9.15075 9.76127 10.42820 11.33798 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.025556 B = 0.002262 C = 0.002231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1095.362449 B =12373.483586 C =12549.884076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.132 4.132 3 C 0.161 3.839 4 H 0.034 0.966 5 C 0.137 3.863 6 H 0.096 0.904 7 N -0.706 5.706 8 C 0.555 3.445 9 O -0.537 6.537 10 C -0.130 4.130 11 C -0.069 4.069 12 C -0.118 4.118 13 C -0.009 4.009 14 C -0.160 4.160 15 C 0.082 3.918 16 N -0.493 5.493 17 C 0.159 3.841 18 C -0.123 4.123 19 C -0.018 4.018 20 C -0.156 4.156 21 C 0.172 3.828 22 N -0.594 5.594 23 C -0.227 4.227 24 H 0.076 0.924 25 C -0.005 4.005 26 N -0.917 5.917 27 Si 0.911 3.089 28 H -0.288 1.288 29 H -0.291 1.291 30 H -0.281 1.281 31 H 0.044 0.956 32 H 0.046 0.954 33 H 0.047 0.953 34 H 0.058 0.942 35 H 0.065 0.935 36 H 0.397 0.603 37 H 0.133 0.867 38 H 0.137 0.863 39 H 0.140 0.860 40 H 0.154 0.846 41 H 0.167 0.833 42 H 0.149 0.851 43 H 0.063 0.937 44 H 0.061 0.939 45 H 0.079 0.921 46 H 0.026 0.974 47 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.329 9.839 -2.555 23.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.172 4.172 3 C 0.053 3.947 4 H 0.052 0.948 5 C 0.033 3.967 6 H 0.114 0.886 7 N -0.356 5.356 8 C 0.341 3.659 9 O -0.415 6.415 10 C -0.133 4.133 11 C -0.089 4.089 12 C -0.136 4.136 13 C -0.015 4.015 14 C -0.180 4.180 15 C -0.061 4.061 16 N -0.201 5.201 17 C -0.013 4.013 18 C -0.125 4.125 19 C -0.039 4.039 20 C -0.196 4.196 21 C 0.047 3.953 22 N -0.319 5.319 23 C -0.356 4.356 24 H 0.094 0.906 25 C -0.202 4.202 26 N -0.564 5.564 27 Si 0.741 3.259 28 H -0.215 1.215 29 H -0.217 1.217 30 H -0.207 1.207 31 H 0.064 0.936 32 H 0.065 0.935 33 H 0.066 0.934 34 H 0.076 0.924 35 H 0.084 0.916 36 H 0.232 0.768 37 H 0.151 0.849 38 H 0.155 0.845 39 H 0.157 0.843 40 H 0.171 0.829 41 H 0.185 0.815 42 H 0.167 0.833 43 H 0.082 0.918 44 H 0.080 0.920 45 H 0.098 0.902 46 H 0.044 0.956 47 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -21.475 9.757 -3.878 23.904 hybrid contribution 1.014 -0.437 2.009 2.292 sum -20.461 9.320 -1.869 22.562 Atomic orbital electron populations 1.21769 0.97257 1.00552 1.00868 1.22017 0.93576 0.99113 1.02458 1.21070 0.87254 0.93448 0.92956 0.94844 1.22165 0.83060 0.92501 0.99002 0.88575 1.45999 1.27123 1.51792 1.10731 1.18125 0.82578 0.80519 0.84661 1.90782 1.72358 1.52783 1.25581 1.20073 0.97413 1.01507 0.94329 1.21101 0.96412 0.94991 0.96398 1.20862 0.94990 0.99503 0.98241 1.18299 0.94770 0.95244 0.93155 1.21939 0.95426 0.99794 1.00805 1.22260 0.99011 0.97151 0.87675 1.67484 1.17300 1.09757 1.25551 1.23346 0.88432 0.91371 0.98150 1.19014 0.97815 1.01037 0.94678 1.21468 0.90713 0.92407 0.99314 1.23397 0.96612 0.99123 1.00467 1.21447 0.93167 0.93160 0.87538 1.44449 0.98452 1.68869 1.20119 1.18942 0.89325 1.36049 0.91234 0.90647 1.24876 0.96880 1.01120 0.97277 1.69925 1.08825 1.52704 1.24908 0.86142 0.79519 0.78775 0.81436 1.21523 1.21683 1.20673 0.93643 0.93487 0.93353 0.92357 0.91623 0.76800 0.84946 0.84507 0.84263 0.82906 0.81547 0.83291 0.91811 0.92042 0.90240 0.95612 0.93610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.11 9.64 37.16 0.36 -1.75 16 2 C -0.13 -2.38 5.43 -26.73 -0.15 -2.53 16 3 C 0.16 3.08 2.91 -66.95 -0.19 2.88 16 4 H 0.03 0.62 7.72 -51.93 -0.40 0.22 16 5 C 0.14 2.38 2.09 -66.09 -0.14 2.24 16 6 H 0.10 1.83 7.19 -51.93 -0.37 1.45 16 7 N -0.71 -9.76 4.90 -52.99 -0.26 -10.02 16 8 C 0.55 7.91 7.76 -12.36 -0.10 7.81 16 9 O -0.54 -9.50 15.94 5.31 0.08 -9.41 16 10 C -0.13 -1.47 5.87 -104.97 -0.62 -2.08 16 11 C -0.07 -0.62 9.44 -39.53 -0.37 -0.99 16 12 C -0.12 -0.94 9.77 -39.63 -0.39 -1.33 16 13 C -0.01 -0.09 5.75 -106.74 -0.61 -0.70 16 14 C -0.16 -1.19 9.87 -39.40 -0.39 -1.58 16 15 C 0.08 0.65 11.07 -17.95 -0.20 0.46 16 16 N -0.49 -4.84 10.30 -13.11 -0.14 -4.98 16 17 C 0.16 1.42 11.05 -16.93 -0.19 1.23 16 18 C -0.12 -1.20 5.74 -106.88 -0.61 -1.81 16 19 C -0.02 -0.19 9.37 -38.75 -0.36 -0.55 16 20 C -0.16 -2.97 6.76 -24.70 -0.17 -3.14 16 21 C 0.17 4.07 5.45 -2.65 -0.01 4.05 16 22 N -0.59 -14.31 3.13 -162.70 -0.51 -14.82 16 23 C -0.23 -6.02 9.72 -15.06 -0.15 -6.17 16 24 H 0.08 1.94 7.83 -52.48 -0.41 1.53 16 25 C 0.00 -0.13 5.47 -17.43 -0.10 -0.22 16 26 N -0.92 -26.23 10.48 55.49 0.58 -25.65 16 27 Si 0.91 21.52 29.55 -169.99 -5.02 16.50 16 28 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 29 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 30 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 31 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.05 0.70 7.47 -51.93 -0.39 0.31 16 34 H 0.06 1.13 8.03 -51.93 -0.42 0.71 16 35 H 0.07 1.27 7.85 -51.93 -0.41 0.87 16 36 H 0.40 4.50 6.35 -40.82 -0.26 4.24 16 37 H 0.13 0.94 6.34 -52.49 -0.33 0.61 16 38 H 0.14 0.73 8.06 -52.48 -0.42 0.31 16 39 H 0.14 0.65 8.06 -52.49 -0.42 0.23 16 40 H 0.15 0.81 8.06 -52.49 -0.42 0.39 16 41 H 0.17 1.05 8.06 -52.48 -0.42 0.63 16 42 H 0.15 1.48 7.61 -52.49 -0.40 1.08 16 43 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 44 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 45 H 0.08 2.09 6.75 -51.93 -0.35 1.74 16 46 H 0.03 0.67 8.11 -51.93 -0.42 0.24 16 47 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 LS Contribution 383.14 15.07 5.77 5.77 Total: -1.00 -32.14 383.14 -10.55 -42.68 By element: Atomic # 1 Polarization: 10.76 SS G_CDS: -6.68 Total: 4.08 kcal Atomic # 6 Polarization: 0.21 SS G_CDS: -4.38 Total: -4.17 kcal Atomic # 7 Polarization: -55.13 SS G_CDS: -0.32 Total: -55.46 kcal Atomic # 8 Polarization: -9.50 SS G_CDS: 0.08 Total: -9.41 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -32.14 -10.55 -42.68 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087786344.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.695 kcal (2) G-P(sol) polarization free energy of solvation -32.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.683 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds