Wall clock time and date at job start Tue Mar 31 2020 22:38:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.46699 * 2 1 4 4 H 1.09001 * 109.87378 * 54.13707 * 3 2 1 5 5 C 1.54326 * 110.01361 * 293.03435 * 3 2 1 6 6 H 1.08996 * 110.71580 * 336.68565 * 5 3 2 7 7 N 1.46504 * 110.71925 * 99.77878 * 5 3 2 8 8 C 1.34778 * 119.99777 * 205.00482 * 7 5 3 9 9 O 1.21559 * 119.99814 * 359.97438 * 8 7 5 10 10 C 1.47772 * 119.99758 * 180.02562 * 8 7 5 11 11 C 1.40655 * 119.70077 * 359.97438 * 10 8 7 12 12 C 1.35843 * 120.87587 * 179.97438 * 11 10 8 13 13 C 1.40395 * 119.84720 * 0.02562 * 12 11 10 14 14 C 1.40640 * 121.97471 * 180.02562 * 13 12 11 15 15 C 1.36229 * 118.72580 * 179.97438 * 14 13 12 16 16 N 1.32593 * 121.90052 * 359.97438 * 15 14 13 17 17 C 1.31235 * 122.74332 * 0.02562 * 16 15 14 18 18 C 1.40557 * 119.88628 * 359.97438 * 17 16 15 19 19 C 1.38564 * 119.70027 * 179.72587 * 10 8 7 20 20 C 1.55156 * 102.94354 * 218.32063 * 5 3 2 21 21 C 1.54690 * 101.67521 * 35.33297 * 20 5 3 22 22 N 1.47019 * 109.87998 * 175.14790 * 3 2 1 23 23 C 1.36938 * 125.65288 * 298.47778 * 22 3 2 24 24 H 1.08004 * 119.99493 * 347.83134 * 23 22 3 25 25 C 1.38815 * 120.00343 * 168.10791 * 23 22 3 26 26 N 1.31617 * 119.99568 * 359.97438 * 25 23 22 27 27 Si 1.86797 * 119.99755 * 180.02562 * 25 23 22 28 28 H 1.48506 * 109.47163 * 90.00409 * 27 25 23 29 29 H 1.48497 * 109.46885 * 209.99664 * 27 25 23 30 30 H 1.48498 * 109.47538 * 330.00124 * 27 25 23 31 31 H 1.08996 * 109.47122 * 185.44729 * 1 2 3 32 32 H 1.09000 * 109.47495 * 305.44830 * 1 2 3 33 33 H 1.09005 * 109.47437 * 65.45110 * 1 2 3 34 34 H 1.08994 * 109.47141 * 240.00525 * 2 1 3 35 35 H 1.09001 * 109.46966 * 119.99441 * 2 1 3 36 36 H 0.97000 * 119.99758 * 25.00298 * 7 5 3 37 37 H 1.07997 * 119.56320 * 0.02562 * 11 10 8 38 38 H 1.08003 * 120.07470 * 180.02562 * 12 11 10 39 39 H 1.07996 * 120.64178 * 359.95398 * 14 13 12 40 40 H 1.07996 * 119.04585 * 180.02562 * 15 14 13 41 41 H 1.08003 * 120.05840 * 180.02562 * 17 16 15 42 42 H 1.08000 * 120.34167 * 359.97438 * 19 10 8 43 43 H 1.08991 * 111.00730 * 153.57470 * 20 5 3 44 44 H 1.08998 * 111.00337 * 277.42790 * 20 5 3 45 45 H 1.09001 * 110.39291 * 204.36108 * 21 20 5 46 46 H 1.09005 * 110.23902 * 82.11295 * 21 20 5 47 47 H 0.97004 * 119.99279 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5972 1.9921 0.8308 5 6 1.6810 2.1296 -1.3345 6 1 1.5300 1.3899 -2.1206 7 7 0.4910 2.9703 -1.1810 8 6 -0.2807 3.2476 -2.2506 9 8 0.0109 2.8004 -3.3427 10 6 -1.4806 4.0960 -2.0959 11 6 -1.8118 4.6105 -0.8293 12 6 -2.9090 5.3933 -0.6600 13 6 -3.7277 5.6962 -1.7596 14 6 -4.8735 6.5022 -1.6354 15 6 -5.6202 6.7543 -2.7465 16 7 -5.2965 6.2628 -3.9347 17 6 -4.2429 5.5040 -4.1259 18 6 -3.4050 5.1835 -3.0438 19 6 -2.2665 4.3818 -3.2007 20 6 2.9350 2.9948 -1.6282 21 6 4.0702 2.0954 -1.0848 22 7 3.5054 1.4548 0.1169 23 6 4.2262 0.9587 1.1703 24 1 3.7255 0.6920 2.0893 25 6 5.6012 0.8040 1.0589 26 7 6.2120 1.1337 -0.0594 27 14 6.5843 0.1266 2.4955 28 1 6.6592 -1.3529 2.3903 29 1 7.9560 0.6948 2.4684 30 1 5.9192 0.4991 3.7700 31 1 -0.3633 -1.0230 0.0976 32 1 -0.3634 0.5960 0.8372 33 1 -0.3634 0.4270 -0.9348 34 1 1.8933 -0.5137 -0.8900 35 1 1.8933 -0.5138 0.8901 36 1 0.2586 3.3274 -0.3095 37 1 -1.1850 4.3808 0.0196 38 1 -3.1509 5.7818 0.3182 39 1 -5.1561 6.9132 -0.6775 40 1 -6.5009 7.3730 -2.6572 41 1 -4.0196 5.1272 -5.1131 42 1 -2.0058 3.9883 -4.1721 43 1 3.0489 3.1670 -2.6984 44 1 2.8946 3.9386 -1.0844 45 1 4.9389 2.6983 -0.8205 46 1 4.3411 1.3420 -1.8244 47 1 7.1728 1.0252 -0.1373 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001087786344.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:38:56 Heat of formation + Delta-G solvation = 21.153075 kcal Electronic energy + Delta-G solvation = -28738.529861 eV Core-core repulsion = 24885.679356 eV Total energy + Delta-G solvation = -3852.850505 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.94591 -40.99911 -39.41141 -37.92021 -35.70312 -34.36126 -33.98722 -33.56367 -32.30149 -30.91827 -30.56072 -28.20319 -26.61657 -25.46516 -24.93552 -23.71624 -23.17306 -22.32268 -21.77807 -21.31105 -19.25555 -18.77590 -18.69421 -17.86904 -17.15195 -16.83468 -16.65874 -16.08931 -15.99128 -15.72992 -15.53481 -15.37999 -15.11216 -14.88456 -14.65565 -14.48920 -14.33057 -14.19188 -13.79016 -13.56548 -13.26095 -13.04465 -12.89050 -12.84300 -12.72255 -12.58061 -12.29911 -12.21733 -12.03917 -11.97592 -11.91456 -11.55559 -11.37970 -11.22082 -11.08965 -10.67965 -10.49471 -10.23972 -9.99215 -9.09438 -8.84137 -7.83492 -5.21491 -0.79882 -0.31472 0.78923 1.47907 1.49392 1.52123 1.57701 2.02823 2.33960 2.52011 3.07196 3.35203 3.45553 3.47903 3.59551 3.67092 3.69546 3.83335 3.88801 3.91161 4.02508 4.07812 4.19202 4.32156 4.37435 4.41411 4.60490 4.64574 4.66390 4.69569 4.74904 4.81113 4.84137 4.93416 4.95833 5.02394 5.13913 5.19638 5.21199 5.29329 5.33195 5.45588 5.50914 5.57745 5.62025 5.65655 5.73070 5.73777 6.24243 6.51375 6.96572 7.09904 7.16809 7.77824 8.44029 9.26892 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.025556 B = 0.002262 C = 0.002231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1095.362449 B =12373.483586 C =12549.884076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.126 4.126 3 C 0.159 3.841 4 H 0.055 0.945 5 C 0.156 3.844 6 H 0.079 0.921 7 N -0.694 5.694 8 C 0.558 3.442 9 O -0.577 6.577 10 C -0.143 4.143 11 C -0.075 4.075 12 C -0.107 4.107 13 C -0.023 4.023 14 C -0.153 4.153 15 C 0.070 3.930 16 N -0.515 5.515 17 C 0.149 3.851 18 C -0.135 4.135 19 C -0.022 4.022 20 C -0.142 4.142 21 C 0.180 3.820 22 N -0.613 5.613 23 C -0.229 4.229 24 H 0.084 0.916 25 C -0.066 4.066 26 N -0.951 5.951 27 Si 0.975 3.025 28 H -0.290 1.290 29 H -0.298 1.298 30 H -0.265 1.265 31 H 0.058 0.942 32 H 0.068 0.932 33 H 0.047 0.953 34 H 0.035 0.965 35 H 0.050 0.950 36 H 0.413 0.587 37 H 0.153 0.847 38 H 0.170 0.830 39 H 0.172 0.828 40 H 0.178 0.822 41 H 0.182 0.818 42 H 0.144 0.856 43 H 0.066 0.934 44 H 0.074 0.926 45 H 0.047 0.953 46 H -0.009 1.009 47 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.396 11.192 -0.293 26.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.166 4.166 3 C 0.052 3.948 4 H 0.072 0.928 5 C 0.050 3.950 6 H 0.097 0.903 7 N -0.346 5.346 8 C 0.346 3.654 9 O -0.458 6.458 10 C -0.146 4.146 11 C -0.094 4.094 12 C -0.125 4.125 13 C -0.028 4.028 14 C -0.172 4.172 15 C -0.072 4.072 16 N -0.223 5.223 17 C -0.022 4.022 18 C -0.137 4.137 19 C -0.043 4.043 20 C -0.181 4.181 21 C 0.054 3.946 22 N -0.338 5.338 23 C -0.358 4.358 24 H 0.102 0.898 25 C -0.259 4.259 26 N -0.599 5.599 27 Si 0.804 3.196 28 H -0.217 1.217 29 H -0.224 1.224 30 H -0.190 1.190 31 H 0.077 0.923 32 H 0.087 0.913 33 H 0.066 0.934 34 H 0.054 0.946 35 H 0.069 0.931 36 H 0.251 0.749 37 H 0.171 0.829 38 H 0.188 0.812 39 H 0.190 0.810 40 H 0.195 0.805 41 H 0.199 0.801 42 H 0.162 0.838 43 H 0.085 0.915 44 H 0.093 0.907 45 H 0.065 0.935 46 H 0.009 0.991 47 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -24.604 11.125 -1.582 27.049 hybrid contribution 1.832 -0.797 1.266 2.365 sum -22.772 10.328 -0.315 25.007 Atomic orbital electron populations 1.21651 0.93861 1.01952 1.01714 1.21908 0.96450 0.97652 1.00611 1.21262 0.84568 0.94610 0.94379 0.92758 1.21675 0.83769 0.92047 0.97464 0.90310 1.45724 1.25835 1.51273 1.11719 1.18570 0.83005 0.79989 0.83791 1.90766 1.73487 1.54421 1.27144 1.19866 0.96531 1.02352 0.95888 1.21266 0.97239 0.95152 0.95769 1.21210 0.93806 0.98201 0.99239 1.18663 0.95603 0.95404 0.93153 1.22278 0.94257 0.98674 1.02014 1.22761 0.99919 0.97145 0.87377 1.67519 1.17667 1.10279 1.26853 1.23618 0.88317 0.91410 0.98870 1.19098 0.97683 1.01340 0.95626 1.21488 0.91106 0.92627 0.99117 1.23205 0.95598 0.98842 1.00505 1.21141 0.93910 0.92521 0.87038 1.44687 1.00692 1.68879 1.19515 1.19317 0.89710 1.34637 0.92113 0.89782 1.25683 0.98143 1.02310 0.99726 1.70144 1.08414 1.54473 1.26899 0.85129 0.77658 0.77636 0.79218 1.21689 1.22434 1.18984 0.92322 0.91330 0.93426 0.94633 0.93093 0.74900 0.82944 0.81210 0.81015 0.80486 0.80121 0.83830 0.91534 0.90697 0.93509 0.99115 0.94451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.53 9.64 71.98 0.69 -2.84 16 2 C -0.13 -4.49 5.43 30.60 0.17 -4.33 16 3 C 0.16 5.94 2.91 45.34 0.13 6.08 16 4 H 0.05 1.86 7.72 -2.39 -0.02 1.84 16 5 C 0.16 5.36 2.09 46.18 0.10 5.46 16 6 H 0.08 3.04 7.19 -2.39 -0.02 3.02 16 7 N -0.69 -17.97 4.90 -439.85 -2.15 -20.13 16 8 C 0.56 15.37 7.76 86.76 0.67 16.04 16 9 O -0.58 -20.60 15.94 -3.90 -0.06 -20.66 16 10 C -0.14 -3.01 5.87 -20.09 -0.12 -3.13 16 11 C -0.07 -1.10 9.44 22.30 0.21 -0.89 16 12 C -0.11 -1.28 9.77 22.24 0.22 -1.07 16 13 C -0.02 -0.35 5.75 -21.24 -0.12 -0.47 16 14 C -0.15 -1.72 9.87 22.39 0.22 -1.50 16 15 C 0.07 0.94 11.07 84.11 0.93 1.87 16 16 N -0.51 -9.33 10.30 -195.40 -2.01 -11.34 16 17 C 0.15 2.53 11.05 85.35 0.94 3.48 16 18 C -0.14 -2.44 5.74 -21.32 -0.12 -2.56 16 19 C -0.02 -0.45 9.37 22.81 0.21 -0.24 16 20 C -0.14 -5.44 6.76 31.91 0.22 -5.23 16 21 C 0.18 8.86 5.45 86.78 0.47 9.34 16 22 N -0.61 -29.96 3.13 -668.67 -2.09 -32.05 16 23 C -0.23 -12.21 9.72 84.03 0.82 -11.39 16 24 H 0.08 4.25 7.83 -2.91 -0.02 4.23 16 25 C -0.07 -3.64 5.47 84.86 0.46 -3.18 16 26 N -0.95 -56.63 10.48 21.65 0.23 -56.40 16 27 Si 0.97 44.84 29.55 68.60 2.03 46.87 16 28 H -0.29 -13.28 7.11 99.48 0.71 -12.57 16 29 H -0.30 -13.91 7.11 99.48 0.71 -13.20 16 30 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 31 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 32 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 33 H 0.05 1.27 7.47 -2.38 -0.02 1.26 16 34 H 0.03 1.40 8.03 -2.39 -0.02 1.38 16 35 H 0.05 1.94 7.85 -2.39 -0.02 1.93 16 36 H 0.41 8.08 6.35 -92.71 -0.59 7.49 16 37 H 0.15 1.53 6.34 -2.91 -0.02 1.51 16 38 H 0.17 0.89 8.06 -2.91 -0.02 0.86 16 39 H 0.17 0.74 8.06 -2.91 -0.02 0.71 16 40 H 0.18 1.32 8.06 -2.91 -0.02 1.30 16 41 H 0.18 2.24 8.06 -2.91 -0.02 2.21 16 42 H 0.14 2.94 7.61 -2.91 -0.02 2.91 16 43 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16 44 H 0.07 2.67 8.14 -2.39 -0.02 2.65 16 45 H 0.05 2.59 6.75 -2.39 -0.02 2.58 16 46 H -0.01 -0.51 8.11 -2.38 -0.02 -0.53 16 47 H 0.25 14.36 8.31 -92.71 -0.77 13.59 16 Total: -1.00 -72.81 383.14 2.44 -70.37 By element: Atomic # 1 Polarization: 17.51 SS G_CDS: 0.40 Total: 17.91 kcal Atomic # 6 Polarization: -0.67 SS G_CDS: 6.11 Total: 5.44 kcal Atomic # 7 Polarization: -113.89 SS G_CDS: -6.03 Total: -119.93 kcal Atomic # 8 Polarization: -20.60 SS G_CDS: -0.06 Total: -20.66 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 2.03 Total: 46.87 kcal Total: -72.81 2.44 -70.37 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087786344.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.527 kcal (2) G-P(sol) polarization free energy of solvation -72.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.374 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds