Wall clock time and date at job start Tue Mar 31 2020 22:38:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.47358 * 2 1 4 4 H 1.09005 * 109.87387 * 53.86699 * 3 2 1 5 5 C 1.54325 * 109.88381 * 292.84962 * 3 2 1 6 6 H 1.09006 * 110.71706 * 336.75050 * 5 3 2 7 7 N 1.46501 * 110.72200 * 100.02408 * 5 3 2 8 8 C 1.34772 * 119.99995 * 205.00375 * 7 5 3 9 9 O 1.21505 * 120.00330 * 359.97438 * 8 7 5 10 10 C 1.48272 * 119.99945 * 180.02562 * 8 7 5 11 11 C 1.40285 * 119.24057 * 180.02562 * 10 8 7 12 12 C 1.36499 * 119.81446 * 179.97438 * 11 10 8 13 13 C 1.40760 * 118.24779 * 359.97438 * 12 11 10 14 14 C 1.40410 * 121.27590 * 180.02562 * 13 12 11 15 15 C 1.36132 * 119.65274 * 179.97438 * 14 13 12 16 16 C 1.39438 * 120.91178 * 359.97438 * 15 14 13 17 17 C 1.35998 * 121.08208 * 0.02562 * 16 15 14 18 18 C 1.40831 * 119.74027 * 359.97438 * 17 16 15 19 19 N 1.31875 * 119.24145 * 359.72254 * 10 8 7 20 20 C 1.55403 * 102.83075 * 218.48248 * 5 3 2 21 21 C 1.54913 * 101.66650 * 35.33174 * 20 5 3 22 22 N 1.47020 * 109.88610 * 174.88059 * 3 2 1 23 23 C 1.36938 * 125.64850 * 298.39484 * 22 3 2 24 24 H 1.08000 * 119.99891 * 345.36467 * 23 22 3 25 25 C 1.38808 * 120.00181 * 165.36389 * 23 22 3 26 26 N 1.31620 * 120.00105 * 359.97438 * 25 23 22 27 27 Si 1.86803 * 120.00057 * 179.97438 * 25 23 22 28 28 H 1.48498 * 109.47129 * 60.00192 * 27 25 23 29 29 H 1.48505 * 109.47016 * 180.02562 * 27 25 23 30 30 H 1.48504 * 109.47267 * 299.99872 * 27 25 23 31 31 H 1.08998 * 109.46791 * 305.52553 * 1 2 3 32 32 H 1.09003 * 109.46925 * 65.52325 * 1 2 3 33 33 H 1.09001 * 109.47217 * 185.52412 * 1 2 3 34 34 H 1.08994 * 109.47151 * 239.99723 * 2 1 3 35 35 H 1.09005 * 109.46948 * 119.99839 * 2 1 3 36 36 H 0.96998 * 119.99668 * 25.00240 * 7 5 3 37 37 H 1.07995 * 120.09197 * 359.97438 * 11 10 8 38 38 H 1.08003 * 120.87627 * 180.02562 * 12 11 10 39 39 H 1.08006 * 120.17326 * 359.96142 * 14 13 12 40 40 H 1.08000 * 119.54934 * 179.97438 * 15 14 13 41 41 H 1.07993 * 119.46101 * 180.02562 * 16 15 14 42 42 H 1.07997 * 120.13232 * 180.02562 * 17 16 15 43 43 H 1.09004 * 110.88947 * 277.26572 * 20 5 3 44 44 H 1.08993 * 111.04100 * 153.46860 * 20 5 3 45 45 H 1.09001 * 110.36983 * 204.23777 * 21 20 5 46 46 H 1.09004 * 110.36222 * 81.91171 * 21 20 5 47 47 H 0.96999 * 120.00150 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5937 1.9933 0.8279 5 6 1.6837 2.1252 -1.3374 6 1 1.5340 1.3828 -2.1214 7 7 0.4962 2.9700 -1.1879 8 6 -0.2742 3.2452 -2.2589 9 8 0.0164 2.7930 -3.3486 10 6 -1.4757 4.1007 -2.1077 11 6 -2.2666 4.3765 -3.2331 12 6 -3.3756 5.1622 -3.1071 13 6 -3.6888 5.6733 -1.8335 14 6 -4.8147 6.4876 -1.6316 15 6 -5.0868 6.9637 -0.3855 16 6 -4.2626 6.6534 0.6956 17 6 -3.1637 5.8678 0.5380 18 6 -2.8479 5.3556 -0.7353 19 7 -1.7797 4.5798 -0.9173 20 6 2.9428 2.9875 -1.6308 21 6 4.0756 2.0852 -1.0810 22 7 3.5050 1.4548 0.1234 23 6 4.2210 0.9618 1.1814 24 1 3.7224 0.7354 2.1122 25 6 5.5877 0.7530 1.0575 26 7 6.1954 1.0284 -0.0771 27 14 6.5646 0.0810 2.5010 28 1 6.0312 -1.2514 2.8823 29 1 7.9926 -0.0489 2.1147 30 1 6.4467 1.0098 3.6538 31 1 -0.3633 0.5971 0.8364 32 1 -0.3633 0.4258 -0.9353 33 1 -0.3634 -1.0229 0.0989 34 1 1.8933 -0.5138 -0.8899 35 1 1.8933 -0.5138 0.8900 36 1 0.2644 3.3312 -0.3180 37 1 -1.9987 3.9683 -4.1964 38 1 -3.9969 5.3852 -3.9620 39 1 -5.4613 6.7353 -2.4605 40 1 -5.9530 7.5902 -0.2322 41 1 -4.5007 7.0434 1.6741 42 1 -2.5362 5.6369 1.3860 43 1 2.9002 3.9337 -1.0912 44 1 3.0615 3.1551 -2.7012 45 1 4.9459 2.6866 -0.8183 46 1 4.3456 1.3258 -1.8148 47 1 7.1505 0.8828 -0.1636 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087807046.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:38:50 Heat of formation + Delta-G solvation = 41.995481 kcal Electronic energy + Delta-G solvation = -28905.270157 eV Core-core repulsion = 25053.323446 eV Total energy + Delta-G solvation = -3851.946711 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.24480 -39.61885 -37.86401 -36.96070 -34.24987 -33.68962 -32.70747 -31.73752 -30.94078 -30.34255 -28.91799 -26.72519 -25.39319 -24.32341 -23.81757 -22.43691 -22.21322 -20.86179 -20.15712 -19.75874 -18.34634 -17.88983 -17.43450 -16.80282 -15.88790 -15.51922 -15.21524 -14.97279 -14.73276 -14.66780 -14.18839 -14.10250 -13.90939 -13.70246 -13.64056 -13.42734 -13.06457 -12.64551 -12.12569 -12.02395 -11.92530 -11.87741 -11.83611 -11.61537 -11.10667 -10.92335 -10.87126 -10.81197 -10.58780 -10.45647 -10.37316 -10.12303 -10.07596 -9.75155 -9.62433 -9.58391 -9.12581 -8.66976 -8.59516 -8.51830 -6.78077 -5.73034 -3.09247 -0.09163 0.37592 1.62317 2.24378 3.14826 3.17590 3.41127 3.45734 3.46629 3.84473 3.87461 4.20764 4.42282 4.46646 4.50183 4.63210 4.79484 4.82938 5.00791 5.13473 5.30079 5.39156 5.42075 5.53312 5.57888 5.59644 5.66756 5.72731 5.80308 5.83622 5.89880 5.98120 6.04799 6.10722 6.13924 6.27934 6.32911 6.45040 6.46315 6.50341 6.58892 6.70236 6.76997 6.98436 7.16258 7.39165 7.53513 7.63171 7.78036 7.81197 8.27971 8.34268 9.20477 9.81414 10.49593 11.38964 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.018403 B = 0.002536 C = 0.002413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1521.102764 B =11039.209357 C =11599.476187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.131 4.131 3 C 0.161 3.839 4 H 0.036 0.964 5 C 0.134 3.866 6 H 0.097 0.903 7 N -0.688 5.688 8 C 0.565 3.435 9 O -0.533 6.533 10 C 0.124 3.876 11 C -0.124 4.124 12 C -0.064 4.064 13 C -0.090 4.090 14 C -0.102 4.102 15 C -0.109 4.109 16 C -0.106 4.106 17 C -0.083 4.083 18 C 0.124 3.876 19 N -0.442 5.442 20 C -0.156 4.156 21 C 0.175 3.825 22 N -0.594 5.594 23 C -0.227 4.227 24 H 0.075 0.925 25 C -0.003 4.003 26 N -0.917 5.917 27 Si 0.910 3.090 28 H -0.284 1.284 29 H -0.290 1.290 30 H -0.285 1.285 31 H 0.047 0.953 32 H 0.046 0.954 33 H 0.044 0.956 34 H 0.057 0.943 35 H 0.065 0.935 36 H 0.408 0.592 37 H 0.152 0.848 38 H 0.145 0.855 39 H 0.131 0.869 40 H 0.128 0.872 41 H 0.131 0.869 42 H 0.140 0.860 43 H 0.062 0.938 44 H 0.063 0.937 45 H 0.074 0.926 46 H 0.028 0.972 47 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.566 11.506 -3.100 26.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.171 4.171 3 C 0.053 3.947 4 H 0.054 0.946 5 C 0.030 3.970 6 H 0.115 0.885 7 N -0.338 5.338 8 C 0.348 3.652 9 O -0.410 6.410 10 C -0.030 4.030 11 C -0.145 4.145 12 C -0.090 4.090 13 C -0.092 4.092 14 C -0.120 4.120 15 C -0.127 4.127 16 C -0.126 4.126 17 C -0.102 4.102 18 C 0.000 4.000 19 N -0.153 5.153 20 C -0.196 4.196 21 C 0.050 3.950 22 N -0.318 5.318 23 C -0.356 4.356 24 H 0.092 0.908 25 C -0.200 4.200 26 N -0.563 5.563 27 Si 0.740 3.260 28 H -0.211 1.211 29 H -0.216 1.216 30 H -0.211 1.211 31 H 0.066 0.934 32 H 0.065 0.935 33 H 0.063 0.937 34 H 0.076 0.924 35 H 0.084 0.916 36 H 0.245 0.755 37 H 0.169 0.831 38 H 0.163 0.837 39 H 0.149 0.851 40 H 0.146 0.854 41 H 0.149 0.851 42 H 0.158 0.842 43 H 0.080 0.920 44 H 0.082 0.918 45 H 0.092 0.908 46 H 0.046 0.954 47 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -22.568 10.947 -3.042 25.266 hybrid contribution -0.121 -0.022 0.432 0.450 sum -22.688 10.925 -2.609 25.316 Atomic orbital electron populations 1.21766 0.97275 1.00436 1.00946 1.22012 0.93545 0.99121 1.02417 1.21077 0.87240 0.93426 0.92980 0.94603 1.22252 0.83162 0.92493 0.99112 0.88538 1.45935 1.26345 1.50189 1.11324 1.17856 0.82022 0.80469 0.84827 1.90783 1.71789 1.52553 1.25829 1.21506 0.95730 0.96312 0.89425 1.21784 0.94444 0.97855 1.00390 1.21462 0.96259 0.94877 0.96425 1.18987 0.96778 0.99090 0.94333 1.20994 0.96023 0.97022 0.97998 1.21002 0.99620 0.99407 0.92718 1.20944 0.94490 0.97714 0.99466 1.20934 0.97285 0.96443 0.95497 1.18867 0.91341 0.95880 0.93871 1.67856 1.15889 1.07835 1.23749 1.23484 0.96521 0.99175 1.00434 1.21431 0.92925 0.93073 0.87608 1.44430 0.98478 1.69207 1.19701 1.18893 0.90091 1.36336 0.90242 0.90762 1.24904 0.97097 1.00979 0.97061 1.69916 1.09395 1.53060 1.23972 0.86235 0.79142 0.79023 0.81550 1.21096 1.21627 1.21150 0.93378 0.93468 0.93713 0.92408 0.91602 0.75542 0.83071 0.83702 0.85078 0.85398 0.85066 0.84244 0.91969 0.91823 0.90775 0.95360 0.93585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.29 9.65 37.16 0.36 -1.93 16 2 C -0.13 -2.50 5.43 -26.73 -0.15 -2.65 16 3 C 0.16 3.27 2.91 -66.96 -0.19 3.08 16 4 H 0.04 0.73 7.71 -51.93 -0.40 0.33 16 5 C 0.13 2.49 2.10 -65.96 -0.14 2.36 16 6 H 0.10 1.91 7.18 -51.93 -0.37 1.54 16 7 N -0.69 -11.01 4.95 -52.70 -0.26 -11.28 16 8 C 0.56 9.05 7.81 -12.14 -0.09 8.96 16 9 O -0.53 -9.86 15.93 5.36 0.09 -9.77 16 10 C 0.12 1.70 6.75 -82.95 -0.56 1.14 16 11 C -0.12 -1.40 9.54 -39.44 -0.38 -1.77 16 12 C -0.06 -0.57 9.88 -39.26 -0.39 -0.96 16 13 C -0.09 -0.87 5.75 -106.72 -0.61 -1.48 16 14 C -0.10 -0.72 9.77 -39.52 -0.39 -1.11 16 15 C -0.11 -0.69 9.96 -39.89 -0.40 -1.09 16 16 C -0.11 -0.74 9.94 -39.94 -0.40 -1.14 16 17 C -0.08 -0.77 9.99 -39.41 -0.39 -1.17 16 18 C 0.12 1.42 6.61 -84.85 -0.56 0.86 16 19 N -0.44 -5.82 9.47 -7.54 -0.07 -5.90 16 20 C -0.16 -3.12 6.78 -24.45 -0.17 -3.28 16 21 C 0.17 4.25 5.41 -2.53 -0.01 4.24 16 22 N -0.59 -14.80 3.13 -162.57 -0.51 -15.30 16 23 C -0.23 -6.19 9.71 -15.06 -0.15 -6.33 16 24 H 0.07 1.96 7.83 -52.49 -0.41 1.55 16 25 C 0.00 -0.09 5.47 -17.43 -0.10 -0.19 16 26 N -0.92 -26.70 10.57 55.49 0.59 -26.11 16 27 Si 0.91 21.92 29.55 -169.99 -5.02 16.90 16 28 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 29 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 30 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 31 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.05 0.74 7.48 -51.93 -0.39 0.35 16 33 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.06 1.16 8.02 -51.93 -0.42 0.75 16 35 H 0.07 1.34 7.84 -51.93 -0.41 0.94 16 36 H 0.41 6.09 7.67 -40.82 -0.31 5.78 16 37 H 0.15 1.59 7.60 -52.49 -0.40 1.19 16 38 H 0.15 0.79 8.06 -52.48 -0.42 0.37 16 39 H 0.13 0.59 8.06 -52.48 -0.42 0.16 16 40 H 0.13 0.47 8.06 -52.49 -0.42 0.05 16 41 H 0.13 0.59 8.06 -52.49 -0.42 0.17 16 42 H 0.14 1.17 8.06 -52.49 -0.42 0.75 16 43 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 44 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 45 H 0.07 1.99 6.93 -51.93 -0.36 1.63 16 46 H 0.03 0.75 8.06 -51.93 -0.42 0.33 16 47 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 LS Contribution 385.86 15.07 5.81 5.81 Total: -1.00 -31.78 385.86 -10.91 -42.69 By element: Atomic # 1 Polarization: 12.26 SS G_CDS: -6.83 Total: 5.43 kcal Atomic # 6 Polarization: 2.23 SS G_CDS: -4.71 Total: -2.48 kcal Atomic # 7 Polarization: -58.33 SS G_CDS: -0.25 Total: -58.59 kcal Atomic # 8 Polarization: -9.86 SS G_CDS: 0.09 Total: -9.77 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -31.78 -10.91 -42.69 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087807046.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.689 kcal (2) G-P(sol) polarization free energy of solvation -31.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.694 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds