Wall clock time and date at job start Tue Mar 31 2020 22:39:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53009 * 109.46980 * 2 1 4 4 H 1.08997 * 109.99521 * 55.11685 * 3 2 1 5 5 C 1.54325 * 109.88131 * 294.02178 * 3 2 1 6 6 H 1.08993 * 110.72068 * 336.93372 * 5 3 2 7 7 N 1.46500 * 110.71898 * 100.02696 * 5 3 2 8 8 C 1.34770 * 119.99996 * 202.55536 * 7 5 3 9 9 O 1.21598 * 120.00197 * 0.02562 * 8 7 5 10 10 C 1.47456 * 119.99960 * 180.27480 * 8 7 5 11 11 C 1.38865 * 120.45910 * 353.71759 * 10 8 7 12 12 C 1.38899 * 120.67109 * 180.02562 * 11 10 8 13 13 C 1.36377 * 121.27725 * 359.97438 * 12 11 10 14 14 C 1.40399 * 119.98291 * 359.97438 * 13 12 11 15 15 C 1.40467 * 121.94983 * 180.02562 * 14 13 12 16 16 N 1.31288 * 119.87473 * 179.17535 * 15 14 13 17 17 C 1.32553 * 122.73405 * 0.85665 * 16 15 14 18 18 C 1.36331 * 121.81921 * 359.41795 * 17 16 15 19 19 C 1.40291 * 118.70344 * 359.97438 * 18 17 16 20 20 C 1.55156 * 103.10093 * 218.47744 * 5 3 2 21 21 C 1.54916 * 101.58188 * 35.41374 * 20 5 3 22 22 N 1.47323 * 110.06151 * 176.29034 * 3 2 1 23 23 C 1.36940 * 125.61288 * 298.24214 * 22 3 2 24 24 H 1.07996 * 120.00383 * 345.57143 * 23 22 3 25 25 C 1.38816 * 119.99243 * 165.56601 * 23 22 3 26 26 N 1.31608 * 120.00233 * 0.02562 * 25 23 22 27 27 Si 1.86802 * 119.99564 * 180.02562 * 25 23 22 28 28 H 1.48500 * 109.46995 * 0.02562 * 27 25 23 29 29 H 1.48495 * 109.47317 * 120.00013 * 27 25 23 30 30 H 1.48503 * 109.47117 * 240.00225 * 27 25 23 31 31 H 1.08998 * 109.47297 * 305.26942 * 1 2 3 32 32 H 1.09000 * 109.47418 * 65.27438 * 1 2 3 33 33 H 1.08996 * 109.46958 * 185.27307 * 1 2 3 34 34 H 1.09000 * 109.47366 * 240.00088 * 2 1 3 35 35 H 1.08998 * 109.47571 * 119.99934 * 2 1 3 36 36 H 0.97001 * 120.00047 * 22.55723 * 7 5 3 37 37 H 1.07992 * 119.66219 * 0.02562 * 11 10 8 38 38 H 1.07997 * 119.36385 * 179.97438 * 12 11 10 39 39 H 1.08003 * 120.00621 * 179.97438 * 13 12 11 40 40 H 1.07997 * 120.06526 * 359.97326 * 15 14 13 41 41 H 1.08002 * 119.09601 * 179.43373 * 17 16 15 42 42 H 1.07997 * 120.65017 * 180.02562 * 18 17 16 43 43 H 1.08994 * 111.00799 * 153.48963 * 20 5 3 44 44 H 1.09005 * 111.00325 * 277.30591 * 20 5 3 45 45 H 1.08997 * 110.36269 * 81.83091 * 21 20 5 46 46 H 1.08991 * 110.36630 * 204.15124 * 21 20 5 47 47 H 0.97005 * 120.00098 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6119 1.9892 0.8402 5 6 1.6579 2.1343 -1.3256 6 1 1.4899 1.3973 -2.1107 7 7 0.4735 2.9779 -1.1474 8 6 -0.2898 3.3009 -2.2101 9 8 0.0042 2.8918 -3.3167 10 6 -1.4785 4.1551 -2.0316 11 6 -1.8951 4.5249 -0.7596 12 6 -3.0144 5.3289 -0.5864 13 6 -3.7353 5.7783 -1.6533 14 6 -3.3497 5.4298 -2.9575 15 6 -4.0615 5.8699 -4.0857 16 7 -3.6552 5.5327 -5.2877 17 6 -2.5932 4.7677 -5.4971 18 6 -1.8400 4.2862 -4.4677 19 6 -2.2058 4.6150 -3.1539 20 6 2.9057 3.0000 -1.6430 21 6 4.0517 2.0955 -1.1249 22 7 3.5104 1.4588 0.0895 23 6 4.2515 0.9620 1.1284 24 1 3.7742 0.7262 2.0680 25 6 5.6164 0.7616 0.9735 26 7 6.1980 1.0494 -0.1714 27 14 6.6273 0.0833 2.3904 28 1 5.7430 -0.1570 3.5589 29 1 7.2612 -1.1949 1.9788 30 1 7.6813 1.0622 2.7596 31 1 -0.3634 0.5934 0.8390 32 1 -0.3634 0.4298 -0.9334 33 1 -0.3633 -1.0233 0.0944 34 1 1.8933 -0.5138 -0.8900 35 1 1.8934 -0.5138 0.8899 36 1 0.2387 3.3041 -0.2645 37 1 -1.3431 4.1840 0.1037 38 1 -3.3198 5.6034 0.4124 39 1 -4.6026 6.4021 -1.4949 40 1 -4.9338 6.4950 -3.9651 41 1 -2.3167 4.5190 -6.5110 42 1 -0.9780 3.6647 -4.6600 43 1 2.9989 3.1731 -2.7150 44 1 2.8754 3.9437 -1.0982 45 1 4.3044 1.3400 -1.8688 46 1 4.9278 2.6959 -0.8801 47 1 7.1519 0.9096 -0.2795 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001087827892.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:39:06 Heat of formation + Delta-G solvation = 27.235799 kcal Electronic energy + Delta-G solvation = -29227.477229 eV Core-core repulsion = 25374.890491 eV Total energy + Delta-G solvation = -3852.586739 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.08954 -40.82803 -39.29245 -38.10152 -35.74003 -34.38643 -33.88891 -33.52229 -32.16002 -31.14824 -30.40616 -28.13637 -26.50884 -25.53586 -24.56105 -24.31860 -23.41579 -22.23223 -21.72295 -21.09419 -19.10970 -18.78598 -18.71086 -17.62767 -17.30150 -17.10143 -16.67380 -16.22764 -16.06721 -15.74105 -15.61597 -15.43387 -15.03906 -14.97148 -14.63543 -14.41884 -14.15204 -13.83155 -13.57592 -13.51910 -13.27046 -13.03505 -12.92505 -12.88382 -12.72373 -12.68230 -12.57785 -12.22298 -12.04205 -11.96726 -11.89443 -11.58981 -11.38482 -11.15835 -10.96004 -10.69488 -10.30219 -10.16202 -10.05173 -9.08828 -8.84201 -7.85691 -5.23819 -0.86232 -0.11260 0.64237 1.47000 1.48145 1.57979 1.72766 1.99741 2.25957 2.50907 3.11361 3.34109 3.45474 3.52205 3.62070 3.67507 3.80392 3.81632 3.88921 3.93178 3.96798 4.17174 4.22332 4.34867 4.39415 4.42469 4.55195 4.60168 4.63783 4.72380 4.75772 4.80366 4.90125 4.96487 4.99812 5.09883 5.14366 5.18827 5.28833 5.29882 5.38973 5.44789 5.48682 5.56197 5.63646 5.70457 5.70896 5.80840 6.22456 6.49358 6.97907 7.08376 7.17900 7.75864 8.43021 9.25695 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.022242 B = 0.002575 C = 0.002479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1258.565394 B =10872.847404 C =11290.312361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.126 4.126 3 C 0.159 3.841 4 H 0.057 0.943 5 C 0.157 3.843 6 H 0.077 0.923 7 N -0.693 5.693 8 C 0.559 3.441 9 O -0.571 6.571 10 C -0.159 4.159 11 C -0.038 4.038 12 C -0.131 4.131 13 C -0.041 4.041 14 C -0.137 4.137 15 C 0.150 3.850 16 N -0.515 5.515 17 C 0.067 3.933 18 C -0.183 4.183 19 C -0.007 4.007 20 C -0.142 4.142 21 C 0.183 3.817 22 N -0.613 5.613 23 C -0.229 4.229 24 H 0.085 0.915 25 C -0.064 4.064 26 N -0.950 5.950 27 Si 0.974 3.026 28 H -0.262 1.262 29 H -0.297 1.297 30 H -0.294 1.294 31 H 0.070 0.930 32 H 0.045 0.955 33 H 0.058 0.942 34 H 0.033 0.967 35 H 0.051 0.949 36 H 0.412 0.588 37 H 0.156 0.844 38 H 0.174 0.826 39 H 0.181 0.819 40 H 0.204 0.796 41 H 0.162 0.838 42 H 0.152 0.848 43 H 0.064 0.936 44 H 0.073 0.927 45 H -0.008 1.008 46 H 0.042 0.958 47 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.481 11.130 0.563 26.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.166 4.166 3 C 0.053 3.947 4 H 0.075 0.925 5 C 0.052 3.948 6 H 0.095 0.905 7 N -0.344 5.344 8 C 0.349 3.651 9 O -0.453 6.453 10 C -0.163 4.163 11 C -0.058 4.058 12 C -0.149 4.149 13 C -0.061 4.061 14 C -0.139 4.139 15 C -0.022 4.022 16 N -0.223 5.223 17 C -0.075 4.075 18 C -0.202 4.202 19 C -0.013 4.013 20 C -0.181 4.181 21 C 0.057 3.943 22 N -0.338 5.338 23 C -0.358 4.358 24 H 0.103 0.897 25 C -0.257 4.257 26 N -0.599 5.599 27 Si 0.803 3.197 28 H -0.186 1.186 29 H -0.224 1.224 30 H -0.221 1.221 31 H 0.089 0.911 32 H 0.064 0.936 33 H 0.077 0.923 34 H 0.052 0.948 35 H 0.070 0.930 36 H 0.251 0.749 37 H 0.173 0.827 38 H 0.192 0.808 39 H 0.198 0.802 40 H 0.221 0.779 41 H 0.179 0.821 42 H 0.169 0.831 43 H 0.082 0.918 44 H 0.092 0.908 45 H 0.010 0.990 46 H 0.060 0.940 47 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -24.396 10.994 -0.970 26.777 hybrid contribution 2.047 -1.060 1.079 2.545 sum -22.349 9.934 0.109 24.458 Atomic orbital electron populations 1.21653 0.93819 1.02004 1.01717 1.21897 0.96464 0.97611 1.00618 1.21313 0.84489 0.94552 0.94365 0.92531 1.21670 0.83757 0.91880 0.97515 0.90466 1.45720 1.26376 1.51434 1.10901 1.18432 0.82810 0.79831 0.84052 1.90597 1.73079 1.56029 1.25577 1.19730 0.97696 1.03912 0.94912 1.21939 0.95617 0.92912 0.95325 1.21316 0.94460 0.97487 1.01613 1.21707 0.99269 0.95714 0.89372 1.19320 0.96369 1.00674 0.97503 1.23908 0.97939 0.94579 0.85745 1.67475 1.15101 1.13117 1.26650 1.22491 0.90980 0.93777 1.00207 1.22813 1.02732 1.01640 0.93024 1.18183 0.94379 0.95471 0.93246 1.23232 0.95719 0.98768 1.00401 1.21117 0.93757 0.92367 0.87058 1.44764 1.00582 1.68915 1.19493 1.19353 0.90211 1.34772 0.91496 0.89743 1.25716 0.98549 1.02107 0.99371 1.70145 1.09756 1.54672 1.25302 0.85070 0.78583 0.77061 0.78990 1.18573 1.22440 1.22090 0.91122 0.93567 0.92305 0.94761 0.92989 0.74937 0.82683 0.80825 0.80193 0.77897 0.82073 0.83061 0.91758 0.90802 0.98966 0.93985 0.94441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.52 9.61 71.98 0.69 -2.83 16 2 C -0.13 -4.48 5.43 30.60 0.17 -4.32 16 3 C 0.16 5.97 2.94 45.29 0.13 6.11 16 4 H 0.06 1.92 7.70 -2.39 -0.02 1.90 16 5 C 0.16 5.46 1.99 46.18 0.09 5.55 16 6 H 0.08 3.01 7.26 -2.39 -0.02 2.99 16 7 N -0.69 -18.27 4.88 -440.16 -2.15 -20.42 16 8 C 0.56 16.14 7.73 86.67 0.67 16.81 16 9 O -0.57 -20.84 13.19 -4.03 -0.05 -20.89 16 10 C -0.16 -3.64 5.90 -19.92 -0.12 -3.75 16 11 C -0.04 -0.53 9.51 22.58 0.21 -0.32 16 12 C -0.13 -1.12 9.92 21.99 0.22 -0.90 16 13 C -0.04 -0.37 9.79 22.36 0.22 -0.15 16 14 C -0.14 -2.36 5.74 -21.33 -0.12 -2.48 16 15 C 0.15 2.44 11.05 85.32 0.94 3.38 16 16 N -0.52 -11.65 10.30 -195.39 -2.01 -13.66 16 17 C 0.07 1.66 11.07 84.14 0.93 2.59 16 18 C -0.18 -5.06 9.27 22.32 0.21 -4.86 16 19 C -0.01 -0.17 5.77 -21.11 -0.12 -0.29 16 20 C -0.14 -5.52 6.77 31.99 0.22 -5.30 16 21 C 0.18 9.09 5.42 86.86 0.47 9.56 16 22 N -0.61 -30.01 3.14 -667.54 -2.10 -32.10 16 23 C -0.23 -12.24 9.76 84.03 0.82 -11.42 16 24 H 0.08 4.27 7.83 -2.91 -0.02 4.25 16 25 C -0.06 -3.57 5.47 84.86 0.46 -3.11 16 26 N -0.95 -56.83 10.56 21.65 0.23 -56.60 16 27 Si 0.97 44.86 29.55 68.60 2.03 46.89 16 28 H -0.26 -11.15 7.11 99.48 0.71 -10.44 16 29 H -0.30 -13.91 7.11 99.48 0.71 -13.20 16 30 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 31 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 32 H 0.05 1.24 7.42 -2.39 -0.02 1.23 16 33 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 34 H 0.03 1.36 8.05 -2.39 -0.02 1.34 16 35 H 0.05 1.98 7.90 -2.39 -0.02 1.96 16 36 H 0.41 8.11 6.41 -92.71 -0.59 7.52 16 37 H 0.16 1.38 6.43 -2.91 -0.02 1.36 16 38 H 0.17 0.21 8.06 -2.91 -0.02 0.19 16 39 H 0.18 0.08 8.06 -2.91 -0.02 0.05 16 40 H 0.20 1.39 8.06 -2.91 -0.02 1.37 16 41 H 0.16 3.36 8.06 -2.91 -0.02 3.34 16 42 H 0.15 4.89 5.06 -2.91 -0.01 4.87 16 43 H 0.06 2.49 8.14 -2.39 -0.02 2.47 16 44 H 0.07 2.69 8.14 -2.38 -0.02 2.68 16 45 H -0.01 -0.43 8.07 -2.39 -0.02 -0.45 16 46 H 0.04 2.34 6.90 -2.39 -0.02 2.32 16 47 H 0.25 14.39 8.31 -92.70 -0.77 13.62 16 Total: -1.00 -75.56 378.24 2.44 -73.12 By element: Atomic # 1 Polarization: 19.00 SS G_CDS: 0.40 Total: 19.40 kcal Atomic # 6 Polarization: -1.84 SS G_CDS: 6.10 Total: 4.26 kcal Atomic # 7 Polarization: -116.75 SS G_CDS: -6.03 Total: -122.78 kcal Atomic # 8 Polarization: -20.84 SS G_CDS: -0.05 Total: -20.89 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 2.03 Total: 46.89 kcal Total: -75.56 2.44 -73.12 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087827892.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.357 kcal (2) G-P(sol) polarization free energy of solvation -75.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.121 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds