Wall clock time and date at job start Tue Mar 31 2020 22:22:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.29392 * 125.58554 * 2 1 4 4 N 1.40169 * 108.14450 * 179.97438 * 3 2 1 5 5 C 1.46496 * 126.35755 * 180.02562 * 4 3 2 6 6 C 1.50701 * 109.46971 * 270.02729 * 5 4 3 7 7 O 1.21275 * 120.00138 * 359.97438 * 6 5 4 8 8 N 1.34779 * 119.99997 * 179.97438 * 6 5 4 9 9 C 1.46504 * 119.99792 * 179.97438 * 8 6 5 10 10 H 1.08994 * 109.45879 * 35.02441 * 9 8 6 11 11 C 1.53041 * 109.44735 * 275.05638 * 9 8 6 12 12 C 1.53626 * 109.24050 * 178.50111 * 11 9 8 13 13 N 1.46920 * 108.54572 * 54.85469 * 12 11 9 14 14 C 1.36935 * 120.62860 * 126.36578 * 13 12 11 15 15 H 1.08001 * 119.99881 * 207.30766 * 14 13 12 16 16 C 1.38807 * 119.99858 * 27.31523 * 14 13 12 17 17 N 1.31616 * 120.00198 * 17.94581 * 16 14 13 18 18 Si 1.86807 * 119.99893 * 197.67151 * 16 14 13 19 19 H 1.48497 * 109.47028 * 265.63900 * 18 16 14 20 20 H 1.48499 * 109.46778 * 25.64129 * 18 16 14 21 21 H 1.48494 * 109.47139 * 145.64006 * 18 16 14 22 22 C 1.46928 * 118.73829 * 306.09740 * 13 12 11 23 23 C 1.53038 * 109.45707 * 154.99631 * 9 8 6 24 24 H 1.09000 * 109.52523 * 61.40302 * 23 9 8 25 25 O 1.42901 * 109.50042 * 301.32139 * 23 9 8 26 26 C 1.34946 * 107.29538 * 0.26055 * 4 3 2 27 27 O 1.21813 * 126.30414 * 179.71917 * 26 4 3 28 28 N 1.34818 * 107.39558 * 359.58185 * 26 4 3 29 29 C 1.46492 * 125.83313 * 180.13399 * 28 26 4 30 30 H 1.09002 * 109.47070 * 0.02562 * 1 2 3 31 31 H 1.08994 * 109.47140 * 120.02622 * 1 2 3 32 32 H 1.09002 * 109.46983 * 240.02182 * 1 2 3 33 33 H 1.08998 * 109.47883 * 150.02154 * 5 4 3 34 34 H 1.09002 * 109.46743 * 30.02058 * 5 4 3 35 35 H 0.96997 * 120.00172 * 359.97438 * 8 6 5 36 36 H 1.09005 * 109.49975 * 298.57491 * 11 9 8 37 37 H 1.09000 * 109.49494 * 58.63901 * 11 9 8 38 38 H 1.09004 * 109.73592 * 295.11870 * 12 11 9 39 39 H 1.09004 * 109.66397 * 174.55398 * 12 11 9 40 40 H 0.97005 * 120.00250 * 179.72676 * 17 16 14 41 41 H 1.09005 * 109.58410 * 173.64274 * 22 13 12 42 42 H 1.08999 * 109.58399 * 293.92824 * 22 13 12 43 43 H 0.96703 * 113.99913 * 180.15946 * 25 23 9 44 44 H 1.08996 * 109.47677 * 270.33684 * 29 28 26 45 45 H 1.08999 * 109.47387 * 30.33768 * 29 28 26 46 46 H 1.09004 * 109.47250 * 150.33527 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2600 1.0523 0.0000 4 7 3.5972 0.6322 0.0006 5 6 4.7794 1.4974 0.0013 6 6 5.1850 1.7949 -1.4193 7 8 4.5495 1.3295 -2.3414 8 7 6.2540 2.5780 -1.6649 9 6 6.6487 2.8667 -3.0459 10 1 5.7580 2.9451 -3.6693 11 6 7.5388 1.7367 -3.5683 12 6 7.9190 2.0256 -5.0285 13 7 8.5339 3.3581 -5.0964 14 6 9.7643 3.5301 -5.6724 15 1 10.3990 4.3451 -5.3571 16 6 10.1956 2.6572 -6.6617 17 7 9.3261 1.8990 -7.2952 18 14 12.0094 2.5640 -7.0992 19 1 12.2883 3.4632 -8.2476 20 1 12.8227 2.9865 -5.9308 21 1 12.3588 1.1684 -7.4670 22 6 7.8011 4.5036 -4.5399 23 6 7.4198 4.1879 -3.0902 24 1 8.3235 4.1026 -2.4867 25 8 6.5986 5.2371 -2.5737 26 6 3.5938 -0.7173 -0.0049 27 8 4.5736 -1.4410 -0.0110 28 7 2.3063 -1.1171 0.0006 29 6 1.8395 -2.5057 0.0003 30 1 -0.3633 1.0277 -0.0005 31 1 -0.3633 -0.5142 -0.8897 32 1 -0.3633 -0.5135 0.8902 33 1 5.5981 0.9937 0.5151 34 1 4.5467 2.4299 0.5155 35 1 6.7621 2.9505 -0.9274 36 1 8.4414 1.6739 -2.9604 37 1 6.9972 0.7923 -3.5141 38 1 7.0257 2.0031 -5.6528 39 1 8.6300 1.2767 -5.3774 40 1 9.6270 1.2918 -7.9893 41 1 8.4345 5.3903 -4.5664 42 1 6.8998 4.6806 -5.1268 43 1 7.0238 6.1056 -2.5740 44 1 1.7244 -2.8501 -1.0274 45 1 2.5669 -3.1337 0.5147 46 1 0.8797 -2.5665 0.5135 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090768854.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:22:57 Heat of formation + Delta-G solvation = -9.295971 kcal Electronic energy + Delta-G solvation = -30176.105613 eV Core-core repulsion = 25911.085475 eV Total energy + Delta-G solvation = -4265.020138 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.57120 -39.73647 -37.97355 -37.42187 -35.52101 -35.38180 -34.28994 -32.53056 -31.97555 -30.78959 -29.78427 -28.54633 -27.59445 -26.59212 -24.89991 -22.53879 -22.16045 -21.63573 -21.17970 -20.29640 -19.50711 -17.73886 -17.56395 -17.05645 -16.59396 -16.40128 -16.16895 -15.88859 -15.55122 -14.84114 -14.78668 -14.27887 -14.20414 -13.91412 -13.89468 -13.69888 -13.37595 -13.23741 -13.11277 -12.95034 -12.79180 -12.47433 -12.23614 -12.10044 -12.00684 -11.89196 -11.56301 -11.11462 -10.86405 -10.67721 -10.53849 -10.35149 -10.31494 -10.27691 -9.93505 -9.79142 -9.69869 -9.42352 -8.76033 -8.58281 -8.44844 -6.77375 -5.84462 -3.27940 1.54062 1.75614 2.57441 2.74850 2.81703 3.34414 3.41285 3.42318 3.44346 4.12274 4.34373 4.37090 4.51673 4.65289 4.82343 4.83817 4.89089 4.97297 5.00707 5.19081 5.29924 5.32907 5.33166 5.42362 5.49165 5.56327 5.67109 5.77782 5.92366 5.98641 6.12544 6.31029 6.35987 6.48337 6.53584 6.68576 6.77711 6.86594 7.29795 7.49391 7.61033 7.68560 7.73438 7.91785 7.94127 8.37751 8.39990 9.13285 9.76156 10.31904 11.24167 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.018892 B = 0.002519 C = 0.002352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1481.761538 B =11111.688371 C =11900.153066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.272 3.728 3 N -0.270 5.270 4 N -0.435 5.435 5 C 0.143 3.857 6 C 0.495 3.505 7 O -0.527 6.527 8 N -0.713 5.713 9 C 0.165 3.835 10 H 0.087 0.913 11 C -0.147 4.147 12 C 0.172 3.828 13 N -0.588 5.588 14 C -0.260 4.260 15 H 0.067 0.933 16 C 0.005 3.995 17 N -0.899 5.899 18 Si 0.904 3.096 19 H -0.287 1.287 20 H -0.278 1.278 21 H -0.289 1.289 22 C 0.121 3.879 23 C 0.081 3.919 24 H 0.057 0.943 25 O -0.571 6.571 26 C 0.654 3.346 27 O -0.551 6.551 28 N -0.558 5.558 29 C 0.099 3.901 30 H 0.100 0.900 31 H 0.091 0.909 32 H 0.090 0.910 33 H 0.123 0.877 34 H 0.124 0.876 35 H 0.397 0.603 36 H 0.059 0.941 37 H 0.061 0.939 38 H 0.023 0.977 39 H 0.094 0.906 40 H 0.256 0.744 41 H 0.060 0.940 42 H 0.029 0.971 43 H 0.374 0.626 44 H 0.073 0.927 45 H 0.088 0.912 46 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.674 -2.499 19.334 25.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.007 4.007 3 N -0.093 5.093 4 N -0.255 5.255 5 C 0.018 3.982 6 C 0.279 3.721 7 O -0.403 6.403 8 N -0.363 5.363 9 C 0.061 3.939 10 H 0.105 0.895 11 C -0.187 4.187 12 C 0.046 3.954 13 N -0.312 5.312 14 C -0.389 4.389 15 H 0.085 0.915 16 C -0.195 4.195 17 N -0.542 5.542 18 Si 0.733 3.267 19 H -0.214 1.214 20 H -0.204 1.204 21 H -0.215 1.215 22 C -0.007 4.007 23 C 0.020 3.980 24 H 0.075 0.925 25 O -0.375 6.375 26 C 0.354 3.646 27 O -0.424 6.424 28 N -0.288 5.288 29 C -0.044 4.044 30 H 0.118 0.882 31 H 0.110 0.890 32 H 0.108 0.892 33 H 0.141 0.859 34 H 0.142 0.858 35 H 0.231 0.769 36 H 0.078 0.922 37 H 0.080 0.920 38 H 0.042 0.958 39 H 0.112 0.888 40 H 0.066 0.934 41 H 0.079 0.921 42 H 0.046 0.954 43 H 0.220 0.780 44 H 0.092 0.908 45 H 0.107 0.893 46 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -16.721 -2.932 18.587 25.172 hybrid contribution 1.663 -0.207 -0.170 1.684 sum -15.058 -3.140 18.416 23.995 Atomic orbital electron populations 1.20414 0.82932 1.05891 1.04128 1.24160 0.96453 0.81960 0.98078 1.76975 0.87476 1.21052 1.23798 1.48163 1.03699 1.04717 1.68886 1.21238 0.84941 0.95928 0.96116 1.20770 0.80852 0.79265 0.91263 1.90735 1.53129 1.50769 1.45644 1.45999 1.30057 1.50676 1.09603 1.21008 0.98288 0.93112 0.81481 0.89522 1.22678 0.98224 0.96672 1.01168 1.20918 0.97289 0.88246 0.88972 1.44072 1.18377 1.01048 1.67721 1.19149 0.91164 1.14091 1.14483 0.91510 1.25066 0.98031 1.00529 0.95836 1.70041 1.32249 1.27716 1.24217 0.86271 0.85026 0.77168 0.78233 1.21381 1.20371 1.21458 1.21525 0.96041 0.92263 0.90882 1.22770 0.91832 0.86285 0.97125 0.92488 1.86482 1.45200 1.19540 1.86315 1.16618 0.83610 0.83243 0.81178 1.91089 1.34793 1.57960 1.58570 1.45774 1.06619 1.08295 1.68086 1.21795 1.01084 0.77796 1.03679 0.88174 0.89023 0.89182 0.85926 0.85820 0.76942 0.92221 0.92023 0.95844 0.88817 0.93429 0.92136 0.95356 0.77988 0.90816 0.89346 0.89467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.33 9.85 36.01 0.35 0.03 16 2 C 0.27 2.75 7.98 -154.17 -1.23 1.52 16 3 N -0.27 -3.58 12.53 32.97 0.41 -3.16 16 4 N -0.44 -6.42 3.11 -66.31 -0.21 -6.63 16 5 C 0.14 1.80 6.87 -5.20 -0.04 1.77 16 6 C 0.50 8.22 7.86 -10.98 -0.09 8.13 16 7 O -0.53 -11.31 16.09 5.56 0.09 -11.22 16 8 N -0.71 -10.88 4.92 -53.77 -0.26 -11.15 16 9 C 0.16 3.07 2.12 -67.89 -0.14 2.93 16 10 H 0.09 1.88 7.58 -51.93 -0.39 1.49 16 11 C -0.15 -3.04 5.67 -26.39 -0.15 -3.19 16 12 C 0.17 4.24 5.34 -3.49 -0.02 4.23 16 13 N -0.59 -14.64 2.99 -172.05 -0.51 -15.15 16 14 C -0.26 -7.01 9.59 -15.06 -0.14 -7.16 16 15 H 0.07 1.75 7.89 -52.49 -0.41 1.33 16 16 C 0.00 0.13 4.90 -17.43 -0.09 0.04 16 17 N -0.90 -26.25 11.20 55.49 0.62 -25.63 16 18 Si 0.90 21.53 29.59 -169.99 -5.03 16.50 16 19 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 20 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 21 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 22 C 0.12 2.48 6.14 -3.71 -0.02 2.46 16 23 C 0.08 1.39 3.14 -26.61 -0.08 1.30 16 24 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 25 O -0.57 -8.50 13.16 -35.23 -0.46 -8.96 16 26 C 0.65 10.29 8.60 -86.73 -0.75 9.54 16 27 O -0.55 -10.35 17.72 5.09 0.09 -10.26 16 28 N -0.56 -6.37 3.14 -125.41 -0.39 -6.76 16 29 C 0.10 0.67 10.85 59.84 0.65 1.32 16 30 H 0.10 0.40 8.14 -51.93 -0.42 -0.03 16 31 H 0.09 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.09 0.17 8.14 -51.93 -0.42 -0.26 16 33 H 0.12 1.30 8.11 -51.93 -0.42 0.88 16 34 H 0.12 1.14 8.14 -51.93 -0.42 0.72 16 35 H 0.40 4.71 8.60 -40.82 -0.35 4.36 16 36 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 37 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 38 H 0.02 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.09 2.56 6.03 -51.93 -0.31 2.25 16 40 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 41 H 0.06 1.16 7.93 -51.93 -0.41 0.75 16 42 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.37 3.96 9.08 45.56 0.41 4.37 16 44 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 45 H 0.09 0.64 8.08 -51.93 -0.42 0.22 16 46 H 0.09 0.25 7.79 -51.93 -0.40 -0.16 16 LS Contribution 385.50 15.07 5.81 5.81 Total: -1.00 -39.76 385.50 -7.67 -47.43 By element: Atomic # 1 Polarization: 12.34 SS G_CDS: -6.08 Total: 6.26 kcal Atomic # 6 Polarization: 24.66 SS G_CDS: -1.74 Total: 22.92 kcal Atomic # 7 Polarization: -68.13 SS G_CDS: -0.34 Total: -68.48 kcal Atomic # 8 Polarization: -30.15 SS G_CDS: -0.28 Total: -30.44 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.03 Total: 16.50 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -39.76 -7.67 -47.43 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090768854.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.133 kcal (2) G-P(sol) polarization free energy of solvation -39.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds