Wall clock time and date at job start Tue Mar 31 2020 22:22:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.29392 * 125.58554 * 2 1 4 4 N 1.40169 * 108.14450 * 179.97438 * 3 2 1 5 5 C 1.46496 * 126.35755 * 180.02562 * 4 3 2 6 6 C 1.50701 * 109.46971 * 270.02729 * 5 4 3 7 7 O 1.21275 * 120.00138 * 359.97438 * 6 5 4 8 8 N 1.34779 * 119.99997 * 179.97438 * 6 5 4 9 9 C 1.46504 * 119.99792 * 179.97438 * 8 6 5 10 10 H 1.08994 * 109.45879 * 35.02441 * 9 8 6 11 11 C 1.53041 * 109.44735 * 275.05638 * 9 8 6 12 12 C 1.53626 * 109.24050 * 178.50111 * 11 9 8 13 13 N 1.46920 * 108.54572 * 54.85469 * 12 11 9 14 14 C 1.36935 * 120.62860 * 126.36578 * 13 12 11 15 15 H 1.08001 * 119.99881 * 207.30766 * 14 13 12 16 16 C 1.38807 * 119.99858 * 27.31523 * 14 13 12 17 17 N 1.31616 * 120.00198 * 17.94581 * 16 14 13 18 18 Si 1.86807 * 119.99893 * 197.67151 * 16 14 13 19 19 H 1.48497 * 109.47028 * 265.63900 * 18 16 14 20 20 H 1.48499 * 109.46778 * 25.64129 * 18 16 14 21 21 H 1.48494 * 109.47139 * 145.64006 * 18 16 14 22 22 C 1.46928 * 118.73829 * 306.09740 * 13 12 11 23 23 C 1.53038 * 109.45707 * 154.99631 * 9 8 6 24 24 H 1.09000 * 109.52523 * 61.40302 * 23 9 8 25 25 O 1.42901 * 109.50042 * 301.32139 * 23 9 8 26 26 C 1.34946 * 107.29538 * 0.26055 * 4 3 2 27 27 O 1.21813 * 126.30414 * 179.71917 * 26 4 3 28 28 N 1.34818 * 107.39558 * 359.58185 * 26 4 3 29 29 C 1.46492 * 125.83313 * 180.13399 * 28 26 4 30 30 H 1.09002 * 109.47070 * 0.02562 * 1 2 3 31 31 H 1.08994 * 109.47140 * 120.02622 * 1 2 3 32 32 H 1.09002 * 109.46983 * 240.02182 * 1 2 3 33 33 H 1.08998 * 109.47883 * 150.02154 * 5 4 3 34 34 H 1.09002 * 109.46743 * 30.02058 * 5 4 3 35 35 H 0.96997 * 120.00172 * 359.97438 * 8 6 5 36 36 H 1.09005 * 109.49975 * 298.57491 * 11 9 8 37 37 H 1.09000 * 109.49494 * 58.63901 * 11 9 8 38 38 H 1.09004 * 109.73592 * 295.11870 * 12 11 9 39 39 H 1.09004 * 109.66397 * 174.55398 * 12 11 9 40 40 H 0.97005 * 120.00250 * 179.72676 * 17 16 14 41 41 H 1.09005 * 109.58410 * 173.64274 * 22 13 12 42 42 H 1.08999 * 109.58399 * 293.92824 * 22 13 12 43 43 H 0.96703 * 113.99913 * 180.15946 * 25 23 9 44 44 H 1.08996 * 109.47677 * 270.33684 * 29 28 26 45 45 H 1.08999 * 109.47387 * 30.33768 * 29 28 26 46 46 H 1.09004 * 109.47250 * 150.33527 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2600 1.0523 0.0000 4 7 3.5972 0.6322 0.0006 5 6 4.7794 1.4974 0.0013 6 6 5.1850 1.7949 -1.4193 7 8 4.5495 1.3295 -2.3414 8 7 6.2540 2.5780 -1.6649 9 6 6.6487 2.8667 -3.0459 10 1 5.7580 2.9451 -3.6693 11 6 7.5388 1.7367 -3.5683 12 6 7.9190 2.0256 -5.0285 13 7 8.5339 3.3581 -5.0964 14 6 9.7643 3.5301 -5.6724 15 1 10.3990 4.3451 -5.3571 16 6 10.1956 2.6572 -6.6617 17 7 9.3261 1.8990 -7.2952 18 14 12.0094 2.5640 -7.0992 19 1 12.2883 3.4632 -8.2476 20 1 12.8227 2.9865 -5.9308 21 1 12.3588 1.1684 -7.4670 22 6 7.8011 4.5036 -4.5399 23 6 7.4198 4.1879 -3.0902 24 1 8.3235 4.1026 -2.4867 25 8 6.5986 5.2371 -2.5737 26 6 3.5938 -0.7173 -0.0049 27 8 4.5736 -1.4410 -0.0110 28 7 2.3063 -1.1171 0.0006 29 6 1.8395 -2.5057 0.0003 30 1 -0.3633 1.0277 -0.0005 31 1 -0.3633 -0.5142 -0.8897 32 1 -0.3633 -0.5135 0.8902 33 1 5.5981 0.9937 0.5151 34 1 4.5467 2.4299 0.5155 35 1 6.7621 2.9505 -0.9274 36 1 8.4414 1.6739 -2.9604 37 1 6.9972 0.7923 -3.5141 38 1 7.0257 2.0031 -5.6528 39 1 8.6300 1.2767 -5.3774 40 1 9.6270 1.2918 -7.9893 41 1 8.4345 5.3903 -4.5664 42 1 6.8998 4.6806 -5.1268 43 1 7.0238 6.1056 -2.5740 44 1 1.7244 -2.8501 -1.0274 45 1 2.5669 -3.1337 0.5147 46 1 0.8797 -2.5665 0.5135 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090768854.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:22:56 Heat of formation + Delta-G solvation = -41.874608 kcal Electronic energy + Delta-G solvation = -30177.518328 eV Core-core repulsion = 25911.085475 eV Total energy + Delta-G solvation = -4266.432854 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.51096 -41.15010 -39.49101 -38.56748 -36.99673 -36.44712 -35.79851 -33.89982 -33.30047 -32.07136 -31.10322 -30.14581 -28.33734 -27.72871 -26.58382 -24.17835 -23.70553 -22.84888 -22.07265 -21.65188 -21.16043 -19.12616 -18.57751 -18.56704 -18.01422 -17.52003 -17.44118 -16.94081 -16.90406 -16.57726 -16.07415 -15.73940 -15.62715 -15.06559 -15.01171 -14.95209 -14.61026 -14.51300 -14.19254 -13.94272 -13.78452 -13.61706 -13.39883 -13.30750 -13.12876 -13.00960 -12.92434 -12.88637 -12.73213 -12.43371 -12.13651 -12.12204 -11.91463 -11.59786 -11.47420 -11.35725 -11.09618 -10.78069 -10.59378 -10.12881 -9.62420 -8.80953 -7.93150 -5.40214 0.62418 0.95351 1.46004 1.47601 1.48185 1.48456 1.58305 1.96752 2.21431 2.47211 3.08885 3.24162 3.34239 3.58554 3.62300 3.75931 3.84533 4.00242 4.04582 4.09278 4.18798 4.22347 4.35034 4.42331 4.47095 4.62841 4.69508 4.75434 4.78875 4.82360 4.83551 4.89174 4.95580 4.97678 5.07431 5.09160 5.31402 5.39447 5.55172 5.61869 5.63680 6.30424 6.45079 6.57066 6.86844 6.88682 7.05948 7.15670 7.74642 8.27596 9.14570 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.018892 B = 0.002519 C = 0.002352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1481.761538 B =11111.688371 C =11900.153066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.285 3.715 3 N -0.307 5.307 4 N -0.445 5.445 5 C 0.146 3.854 6 C 0.491 3.509 7 O -0.583 6.583 8 N -0.696 5.696 9 C 0.172 3.828 10 H 0.050 0.950 11 C -0.129 4.129 12 C 0.182 3.818 13 N -0.603 5.603 14 C -0.265 4.265 15 H 0.080 0.920 16 C -0.054 4.054 17 N -0.939 5.939 18 Si 0.972 3.028 19 H -0.285 1.285 20 H -0.263 1.263 21 H -0.296 1.296 22 C 0.116 3.884 23 C 0.106 3.894 24 H 0.079 0.921 25 O -0.569 6.569 26 C 0.632 3.368 27 O -0.597 6.597 28 N -0.557 5.557 29 C 0.089 3.911 30 H 0.106 0.894 31 H 0.109 0.891 32 H 0.125 0.875 33 H 0.143 0.857 34 H 0.162 0.838 35 H 0.419 0.581 36 H 0.073 0.927 37 H 0.046 0.954 38 H -0.012 1.012 39 H 0.062 0.938 40 H 0.250 0.750 41 H 0.079 0.921 42 H 0.010 0.990 43 H 0.397 0.603 44 H 0.076 0.924 45 H 0.079 0.921 46 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.411 -1.292 22.142 28.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.007 3.993 3 N -0.131 5.131 4 N -0.263 5.263 5 C 0.021 3.979 6 C 0.277 3.723 7 O -0.462 6.462 8 N -0.348 5.348 9 C 0.067 3.933 10 H 0.069 0.931 11 C -0.169 4.169 12 C 0.055 3.945 13 N -0.328 5.328 14 C -0.394 4.394 15 H 0.098 0.902 16 C -0.249 4.249 17 N -0.584 5.584 18 Si 0.799 3.201 19 H -0.212 1.212 20 H -0.187 1.187 21 H -0.223 1.223 22 C -0.010 4.010 23 C 0.044 3.956 24 H 0.096 0.904 25 O -0.376 6.376 26 C 0.331 3.669 27 O -0.474 6.474 28 N -0.284 5.284 29 C -0.052 4.052 30 H 0.125 0.875 31 H 0.128 0.872 32 H 0.143 0.857 33 H 0.161 0.839 34 H 0.180 0.820 35 H 0.256 0.744 36 H 0.091 0.909 37 H 0.065 0.935 38 H 0.006 0.994 39 H 0.081 0.919 40 H 0.059 0.941 41 H 0.098 0.902 42 H 0.028 0.972 43 H 0.248 0.752 44 H 0.095 0.905 45 H 0.098 0.902 46 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -17.483 -1.656 21.466 27.734 hybrid contribution 1.733 -0.543 -1.055 2.100 sum -15.750 -2.199 20.412 25.875 Atomic orbital electron populations 1.20770 0.78633 1.07170 1.06595 1.25311 0.98381 0.80724 0.94866 1.76990 0.86883 1.22465 1.26741 1.48394 1.04840 1.04631 1.68449 1.21445 0.85455 0.97773 0.93249 1.21575 0.80127 0.78056 0.92555 1.90711 1.54942 1.52822 1.47743 1.45724 1.29994 1.50315 1.08764 1.20610 0.96442 0.93432 0.82823 0.93125 1.22387 0.98948 0.96967 0.98647 1.20597 0.94870 0.88114 0.90903 1.44275 1.18468 1.02051 1.67961 1.19591 0.92077 1.13914 1.13848 0.90223 1.25916 1.02072 1.00684 0.96220 1.70219 1.34223 1.28855 1.25142 0.85198 0.80117 0.76488 0.78251 1.21166 1.18714 1.22287 1.21721 0.95182 0.91543 0.92589 1.22261 0.92274 0.86059 0.94972 0.90357 1.86453 1.45134 1.20498 1.85559 1.17049 0.84626 0.83629 0.81554 1.91028 1.36550 1.59034 1.60804 1.46063 1.05415 1.10202 1.66747 1.22181 1.02978 0.75449 1.04549 0.87539 0.87214 0.85654 0.83943 0.82042 0.74386 0.90851 0.93536 0.99388 0.91929 0.94056 0.90232 0.97227 0.75248 0.90524 0.90214 0.84642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.38 9.85 71.24 0.70 0.32 16 2 C 0.28 5.24 7.98 137.69 1.10 6.34 16 3 N -0.31 -7.84 12.53 -49.60 -0.62 -8.46 16 4 N -0.45 -12.98 3.11 -481.78 -1.50 -14.48 16 5 C 0.15 3.50 6.87 85.63 0.59 4.09 16 6 C 0.49 16.26 7.86 87.66 0.69 16.95 16 7 O -0.58 -25.94 16.09 -3.01 -0.05 -25.99 16 8 N -0.70 -20.46 4.92 -442.41 -2.18 -22.63 16 9 C 0.17 6.42 2.12 45.02 0.10 6.52 16 10 H 0.05 2.29 7.58 -2.39 -0.02 2.27 16 11 C -0.13 -5.49 5.67 30.82 0.17 -5.31 16 12 C 0.18 9.44 5.34 86.51 0.46 9.90 16 13 N -0.60 -30.42 2.99 -698.25 -2.09 -32.50 16 14 C -0.26 -14.28 9.59 84.03 0.81 -13.48 16 15 H 0.08 4.03 7.89 -2.91 -0.02 4.01 16 16 C -0.05 -3.01 4.90 84.86 0.42 -2.59 16 17 N -0.94 -57.03 11.20 21.65 0.24 -56.79 16 18 Si 0.97 44.68 29.59 68.60 2.03 46.71 16 19 H -0.28 -12.90 7.11 99.48 0.71 -12.20 16 20 H -0.26 -11.30 7.11 99.48 0.71 -10.59 16 21 H -0.30 -13.87 7.11 99.48 0.71 -13.16 16 22 C 0.12 4.71 6.14 86.36 0.53 5.24 16 23 C 0.11 3.42 3.14 30.67 0.10 3.51 16 24 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 25 O -0.57 -15.21 13.16 -148.98 -1.96 -17.18 16 26 C 0.63 20.11 8.60 178.99 1.54 21.65 16 27 O -0.60 -23.21 17.72 -4.71 -0.08 -23.29 16 28 N -0.56 -12.15 3.14 -668.84 -2.10 -14.25 16 29 C 0.09 1.05 10.85 127.77 1.39 2.44 16 30 H 0.11 0.50 8.14 -2.39 -0.02 0.48 16 31 H 0.11 0.27 8.14 -2.39 -0.02 0.25 16 32 H 0.13 -0.16 8.14 -2.39 -0.02 -0.18 16 33 H 0.14 2.82 8.11 -2.39 -0.02 2.80 16 34 H 0.16 2.57 8.14 -2.39 -0.02 2.55 16 35 H 0.42 8.74 8.60 -92.71 -0.80 7.94 16 36 H 0.07 2.91 8.14 -2.38 -0.02 2.89 16 37 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 38 H -0.01 -0.69 8.14 -2.38 -0.02 -0.71 16 39 H 0.06 3.62 6.03 -2.38 -0.01 3.61 16 40 H 0.25 14.75 8.31 -92.70 -0.77 13.98 16 41 H 0.08 2.89 7.93 -2.38 -0.02 2.87 16 42 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 43 H 0.40 6.83 9.08 -74.06 -0.67 6.16 16 44 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 45 H 0.08 1.11 8.08 -2.39 -0.02 1.09 16 46 H 0.14 0.25 7.79 -2.39 -0.02 0.23 16 Total: -1.00 -93.18 385.50 -0.17 -93.35 By element: Atomic # 1 Polarization: 20.37 SS G_CDS: -0.45 Total: 19.93 kcal Atomic # 6 Polarization: 46.99 SS G_CDS: 8.58 Total: 55.58 kcal Atomic # 7 Polarization: -140.87 SS G_CDS: -8.24 Total: -149.11 kcal Atomic # 8 Polarization: -64.36 SS G_CDS: -2.09 Total: -66.45 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 2.03 Total: 46.71 kcal Total: -93.18 -0.17 -93.35 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090768854.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.472 kcal (2) G-P(sol) polarization free energy of solvation -93.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds